HEADER TRANSFERASE 25-JUN-10 3NOK TITLE CRYSTAL STRUCTURE OF MYXOCOCCUS XANTHUS GLUTAMINYL CYCLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINYL CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.2.5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 3 ORGANISM_TAXID: 34; SOURCE 4 STRAIN: DSM 16526; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS BETA-PROPELLER, GLUTAMINYL CYCLASE, CYCLOTRANSFERASE, PYROGLUTAMATE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PARTHIER,D.R.CARRILLO,M.T.STUBBS REVDAT 4 01-NOV-23 3NOK 1 REMARK LINK REVDAT 3 08-NOV-17 3NOK 1 REMARK REVDAT 2 26-FEB-14 3NOK 1 JRNL VERSN REVDAT 1 03-NOV-10 3NOK 0 JRNL AUTH D.R.CARRILLO,C.PARTHIER,N.JANCKEL,J.GRANDKE,M.STELTER, JRNL AUTH 2 S.SCHILLING,M.BOEHME,P.NEUMANN,R.WOLF,H.U.DEMUTH,M.T.STUBBS, JRNL AUTH 3 J.U.RAHFELD JRNL TITL KINETIC AND STRUCTURAL CHARACTERIZATION OF BACTERIAL JRNL TITL 2 GLUTAMINYL CYCLASES FROM ZYMOMONAS MOBILIS AND MYXOCOCCUS JRNL TITL 3 XANTHUS JRNL REF BIOL.CHEM. V. 391 1419 2010 JRNL REFN ISSN 1431-6730 JRNL PMID 20868223 JRNL DOI 10.1515/BC.2010.130 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 52874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2646 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3460 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3636 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.152 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3818 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5200 ; 2.072 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 7.047 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;31.629 ;23.371 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 581 ;13.708 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.295 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.227 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2946 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2324 ; 1.256 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3742 ; 2.007 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1494 ; 3.065 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1458 ; 4.673 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3NOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: PDB ENTRY 3NOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 SER A -1 REMARK 465 SER A 0 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 VAL A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 THR A 12 REMARK 465 ASN A 13 REMARK 465 ARG A 14 REMARK 465 PRO A 15 REMARK 465 VAL A 16 REMARK 465 PRO A 17 REMARK 465 ASP A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 SER B -1 REMARK 465 SER B 0 REMARK 465 GLY B 1 REMARK 465 LEU B 2 REMARK 465 VAL B 3 REMARK 465 PRO B 4 REMARK 465 ARG B 5 REMARK 465 GLY B 6 REMARK 465 SER B 7 REMARK 465 HIS B 8 REMARK 465 MET B 9 REMARK 465 SER B 10 REMARK 465 PRO B 11 REMARK 465 THR B 12 REMARK 465 ASN B 13 REMARK 465 ARG B 14 REMARK 465 PRO B 15 REMARK 465 VAL B 16 REMARK 465 PRO B 17 REMARK 465 ASP B 18 REMARK 465 ALA B 19 REMARK 465 GLY B 20 REMARK 465 GLY B 21 REMARK 465 SER B 22 REMARK 465 VAL B 23 REMARK 465 GLN B 24 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 370 O HOH A 382 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 176 CB CYS A 176 SG 0.178 REMARK 500 CYS B 176 CB CYS B 176 SG 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 121 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 CYS A 176 CA - CB - SG ANGL. DEV. = 11.4 DEGREES REMARK 500 ARG B 29 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 CYS B 176 CA - CB - SG ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 87 -131.51 -136.61 REMARK 500 TRP A 101 -71.92 -69.07 REMARK 500 TRP A 127 -84.38 -110.08 REMARK 500 ASN A 172 -123.80 -124.64 REMARK 500 ASN A 226 132.68 -172.51 REMARK 500 GLU B 87 -133.41 -134.66 REMARK 500 TRP B 127 -82.89 -104.36 REMARK 500 ASP B 140 20.22 -140.94 REMARK 500 ASN B 172 -125.03 -122.64 REMARK 500 ASN B 226 127.87 -174.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 257 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 48 O REMARK 620 2 GLU A 173 OE1 85.6 REMARK 620 3 GLU A 173 OE2 104.9 48.6 REMARK 620 4 LEU A 174 O 161.3 79.8 73.9 REMARK 620 5 GLU A 175 OE1 94.7 167.8 142.1 97.1 REMARK 620 6 ILE A 228 O 83.0 116.1 74.6 113.9 76.0 REMARK 620 7 HOH A 311 O 87.6 90.0 134.1 80.8 77.8 151.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 257 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 48 O REMARK 620 2 GLU B 173 OE2 84.3 REMARK 620 3 GLU B 173 OE1 106.9 49.8 REMARK 620 4 LEU B 174 O 160.0 79.5 71.0 REMARK 620 5 GLU B 175 OE1 96.7 163.5 143.4 95.5 REMARK 620 6 ILE B 228 O 82.9 117.4 76.7 115.1 78.9 REMARK 620 7 HOH B 275 O 88.6 90.3 133.4 79.9 73.3 149.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ B 2745 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DDQ A 2745 REMARK 999 REMARK 999 SEQUENCE REMARK 999 1. THE SEQUENCE OF THE PROTEIN IS THE SAME AS RESIDUES 20-266 OF REMARK 999 UNIPROTKB/TREMBL Q1DDS6 (Q1DDS6_MYXXD). 2. THE N-TERMINAL RESIDUES REMARK 999 MGSSHHHHHHSSGLVPRGSHM ARE THE EXPRESSION TAG. 3. RESIDUE 55 PHE REMARK 999 REPRESENT A MUTATION, LEU55PHE. DBREF 3NOK A -11 256 PDB 3NOK 3NOK -11 256 DBREF 3NOK B -11 256 PDB 3NOK 3NOK -11 256 SEQRES 1 A 268 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 268 LEU VAL PRO ARG GLY SER HIS MET SER PRO THR ASN ARG SEQRES 3 A 268 PRO VAL PRO ASP ALA GLY GLY SER VAL GLN GLU PRO VAL SEQRES 4 A 268 ARG ARG VAL ALA HIS ILE ILE ARG GLU TYR PRO HIS ALA SEQRES 5 A 268 THR ASN ALA PHE THR GLN GLY LEU VAL PHE HIS GLN GLY SEQRES 6 A 268 HIS PHE PHE GLU SER THR GLY HIS GLN GLY THR LEU ARG SEQRES 7 A 268 GLN LEU SER LEU GLU SER ALA GLN PRO VAL TRP MET GLU SEQRES 8 A 268 ARG LEU GLY ASN ILE PHE ALA GLU GLY LEU ALA SER ASP SEQRES 9 A 268 GLY GLU ARG LEU TYR GLN LEU THR TRP THR GLU GLY LEU SEQRES 10 A 268 LEU PHE THR TRP SER GLY MET PRO PRO GLN ARG GLU ARG SEQRES 11 A 268 THR THR ARG TYR SER GLY GLU GLY TRP GLY LEU CYS TYR SEQRES 12 A 268 TRP ASN GLY LYS LEU VAL ARG SER ASP GLY GLY THR MET SEQRES 13 A 268 LEU THR PHE HIS GLU PRO ASP GLY PHE ALA LEU VAL GLY SEQRES 14 A 268 ALA VAL GLN VAL LYS LEU ARG GLY GLN PRO VAL GLU LEU SEQRES 15 A 268 ILE ASN GLU LEU GLU CYS ALA ASN GLY VAL ILE TYR ALA SEQRES 16 A 268 ASN ILE TRP HIS SER SER ASP VAL LEU GLU ILE ASP PRO SEQRES 17 A 268 ALA THR GLY THR VAL VAL GLY VAL ILE ASP ALA SER ALA SEQRES 18 A 268 LEU THR ARG ALA VAL ALA GLY GLN VAL THR ASN PRO GLU SEQRES 19 A 268 ALA VAL LEU ASN GLY ILE ALA VAL GLU PRO GLY SER GLY SEQRES 20 A 268 ARG ILE PHE MET THR GLY LYS LEU TRP PRO ARG LEU PHE SEQRES 21 A 268 GLU VAL ARG LEU ASP VAL VAL ASP SEQRES 1 B 268 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 268 LEU VAL PRO ARG GLY SER HIS MET SER PRO THR ASN ARG SEQRES 3 B 268 PRO VAL PRO ASP ALA GLY GLY SER VAL GLN GLU PRO VAL SEQRES 4 B 268 ARG ARG VAL ALA HIS ILE ILE ARG GLU TYR PRO HIS ALA SEQRES 5 B 268 THR ASN ALA PHE THR GLN GLY LEU VAL PHE HIS GLN GLY SEQRES 6 B 268 HIS PHE PHE GLU SER THR GLY HIS GLN GLY THR LEU ARG SEQRES 7 B 268 GLN LEU SER LEU GLU SER ALA GLN PRO VAL TRP MET GLU SEQRES 8 B 268 ARG LEU GLY ASN ILE PHE ALA GLU GLY LEU ALA SER ASP SEQRES 9 B 268 GLY GLU ARG LEU TYR GLN LEU THR TRP THR GLU GLY LEU SEQRES 10 B 268 LEU PHE THR TRP SER GLY MET PRO PRO GLN ARG GLU ARG SEQRES 11 B 268 THR THR ARG TYR SER GLY GLU GLY TRP GLY LEU CYS TYR SEQRES 12 B 268 TRP ASN GLY LYS LEU VAL ARG SER ASP GLY GLY THR MET SEQRES 13 B 268 LEU THR PHE HIS GLU PRO ASP GLY PHE ALA LEU VAL GLY SEQRES 14 B 268 ALA VAL GLN VAL LYS LEU ARG GLY GLN PRO VAL GLU LEU SEQRES 15 B 268 ILE ASN GLU LEU GLU CYS ALA ASN GLY VAL ILE TYR ALA SEQRES 16 B 268 ASN ILE TRP HIS SER SER ASP VAL LEU GLU ILE ASP PRO SEQRES 17 B 268 ALA THR GLY THR VAL VAL GLY VAL ILE ASP ALA SER ALA SEQRES 18 B 268 LEU THR ARG ALA VAL ALA GLY GLN VAL THR ASN PRO GLU SEQRES 19 B 268 ALA VAL LEU ASN GLY ILE ALA VAL GLU PRO GLY SER GLY SEQRES 20 B 268 ARG ILE PHE MET THR GLY LYS LEU TRP PRO ARG LEU PHE SEQRES 21 B 268 GLU VAL ARG LEU ASP VAL VAL ASP HET CA A 257 1 HET MES A 258 12 HET DDQ A2745 14 HET CA B 257 1 HET MES B 258 12 HET GOL B 259 6 HET DDQ B2745 14 HETNAM CA CALCIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM DDQ DECYLAMINE-N,N-DIMETHYL-N-OXIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 5 DDQ 2(C12 H27 N O) FORMUL 8 GOL C3 H8 O3 FORMUL 10 HOH *285(H2 O) HELIX 1 1 ALA A 207 ALA A 215 1 9 HELIX 2 2 ALA B 207 ALA B 215 1 9 SHEET 1 A 8 ILE A 171 ALA A 177 0 SHEET 2 A 8 VAL A 180 ILE A 185 -1 O TYR A 182 N GLU A 175 SHEET 3 A 8 ASP A 190 ILE A 194 -1 O LEU A 192 N ALA A 183 SHEET 4 A 8 VAL A 201 ASP A 206 -1 O ILE A 205 N VAL A 191 SHEET 5 A 8 VAL A 27 PRO A 38 1 N ARG A 29 O ASP A 206 SHEET 6 A 8 ARG A 246 VAL A 254 -1 O GLU A 249 N ILE A 34 SHEET 7 A 8 ILE A 237 GLY A 241 -1 N MET A 239 O PHE A 248 SHEET 8 A 8 LEU A 225 VAL A 230 -1 N ALA A 229 O PHE A 238 SHEET 1 B 4 THR A 45 HIS A 51 0 SHEET 2 B 4 HIS A 54 THR A 59 -1 O HIS A 54 N HIS A 51 SHEET 3 B 4 THR A 64 GLN A 67 -1 O ARG A 66 N GLU A 57 SHEET 4 B 4 TRP A 77 ARG A 80 -1 O TRP A 77 N GLN A 67 SHEET 1 C 4 ALA A 86 SER A 91 0 SHEET 2 C 4 LEU A 96 THR A 100 -1 O TYR A 97 N ALA A 90 SHEET 3 C 4 LEU A 105 SER A 110 -1 O TRP A 109 N LEU A 96 SHEET 4 C 4 GLN A 115 ARG A 121 -1 O GLU A 117 N THR A 108 SHEET 1 D 4 LEU A 129 TRP A 132 0 SHEET 2 D 4 LYS A 135 SER A 139 -1 O VAL A 137 N CYS A 130 SHEET 3 D 4 MET A 144 HIS A 148 -1 O THR A 146 N ARG A 138 SHEET 4 D 4 LEU A 155 GLN A 160 -1 O VAL A 156 N PHE A 147 SHEET 1 E 2 LYS A 162 LEU A 163 0 SHEET 2 E 2 GLN A 166 PRO A 167 -1 O GLN A 166 N LEU A 163 SHEET 1 F 8 ILE B 171 ALA B 177 0 SHEET 2 F 8 VAL B 180 ILE B 185 -1 O TYR B 182 N GLU B 175 SHEET 3 F 8 ASP B 190 ILE B 194 -1 O ILE B 194 N ILE B 181 SHEET 4 F 8 VAL B 201 ASP B 206 -1 O ILE B 205 N VAL B 191 SHEET 5 F 8 VAL B 27 PRO B 38 1 N ARG B 29 O ASP B 206 SHEET 6 F 8 ARG B 246 VAL B 255 -1 O LEU B 247 N TYR B 37 SHEET 7 F 8 ILE B 237 GLY B 241 -1 N MET B 239 O PHE B 248 SHEET 8 F 8 LEU B 225 VAL B 230 -1 N ALA B 229 O PHE B 238 SHEET 1 G 4 THR B 45 HIS B 51 0 SHEET 2 G 4 HIS B 54 THR B 59 -1 O PHE B 56 N VAL B 49 SHEET 3 G 4 THR B 64 GLN B 67 -1 O ARG B 66 N GLU B 57 SHEET 4 G 4 TRP B 77 ARG B 80 -1 O TRP B 77 N GLN B 67 SHEET 1 H 4 ALA B 86 SER B 91 0 SHEET 2 H 4 LEU B 96 THR B 100 -1 O LEU B 99 N GLU B 87 SHEET 3 H 4 LEU B 105 SER B 110 -1 O TRP B 109 N LEU B 96 SHEET 4 H 4 GLN B 115 ARG B 121 -1 O GLU B 117 N THR B 108 SHEET 1 I 4 LEU B 129 TRP B 132 0 SHEET 2 I 4 LYS B 135 ARG B 138 -1 O VAL B 137 N CYS B 130 SHEET 3 I 4 MET B 144 HIS B 148 -1 O HIS B 148 N LEU B 136 SHEET 4 I 4 LEU B 155 GLN B 160 -1 O VAL B 156 N PHE B 147 SHEET 1 J 2 LYS B 162 LEU B 163 0 SHEET 2 J 2 GLN B 166 PRO B 167 -1 O GLN B 166 N LEU B 163 SSBOND 1 CYS A 130 CYS A 176 1555 1555 2.10 SSBOND 2 CYS B 130 CYS B 176 1555 1555 2.09 LINK O LEU A 48 CA CA A 257 1555 1555 2.33 LINK OE1 GLU A 173 CA CA A 257 1555 1555 2.51 LINK OE2 GLU A 173 CA CA A 257 1555 1555 2.70 LINK O LEU A 174 CA CA A 257 1555 1555 2.40 LINK OE1 GLU A 175 CA CA A 257 1555 1555 2.25 LINK O ILE A 228 CA CA A 257 1555 1555 2.39 LINK CA CA A 257 O HOH A 311 1555 1555 2.33 LINK O LEU B 48 CA CA B 257 1555 1555 2.27 LINK OE2 GLU B 173 CA CA B 257 1555 1555 2.51 LINK OE1 GLU B 173 CA CA B 257 1555 1555 2.64 LINK O LEU B 174 CA CA B 257 1555 1555 2.42 LINK OE1 GLU B 175 CA CA B 257 1555 1555 2.40 LINK O ILE B 228 CA CA B 257 1555 1555 2.36 LINK CA CA B 257 O HOH B 275 1555 1555 2.39 CISPEP 1 HIS A 61 GLN A 62 0 11.43 CISPEP 2 MET A 112 PRO A 113 0 -1.41 CISPEP 3 HIS B 61 GLN B 62 0 -3.56 CISPEP 4 MET B 112 PRO B 113 0 -0.64 SITE 1 AC1 6 LEU A 48 GLU A 173 LEU A 174 GLU A 175 SITE 2 AC1 6 ILE A 228 HOH A 311 SITE 1 AC2 6 LEU B 48 GLU B 173 LEU B 174 GLU B 175 SITE 2 AC2 6 ILE B 228 HOH B 275 SITE 1 AC3 14 PRO A 232 GLY A 233 SER A 234 GLY A 235 SITE 2 AC3 14 VAL B 49 ALA B 90 SER B 91 CYS B 130 SITE 3 AC3 14 TYR B 131 GLU B 175 CYS B 176 GOL B 259 SITE 4 AC3 14 HOH B 275 HOH B 349 SITE 1 AC4 12 VAL A 49 ALA A 90 SER A 91 CYS A 130 SITE 2 AC4 12 TYR A 131 GLU A 175 CYS A 176 VAL A 230 SITE 3 AC4 12 PRO A 232 HOH A 298 HOH A 311 GOL B 259 SITE 1 AC5 9 ALA A 177 ASN A 178 VAL A 230 PRO A 232 SITE 2 AC5 9 MES A 258 HOH A 391 PRO B 232 MES B 258 SITE 3 AC5 9 HOH B 350 SITE 1 AC6 7 TRP A 186 DDQ A2745 GLN B 46 GLU B 87 SITE 2 AC6 7 TRP B 127 ASN B 172 LYS B 242 SITE 1 AC7 9 GLN A 46 GLU A 87 TRP A 101 TRP A 127 SITE 2 AC7 9 TRP A 186 ASN A 220 LYS A 242 TRP B 186 SITE 3 AC7 9 DDQ B2745 CRYST1 65.790 46.060 81.000 90.00 112.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015200 0.000000 0.006444 0.00000 SCALE2 0.000000 0.021711 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013409 0.00000