HEADER TRANSFERASE 25-JUN-10 3NOM TITLE CRYSTAL STRUCTURE OF ZYMOMONAS MOBILIS GLUTAMINYL CYCLASE (MONOCLINIC TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMINE CYCLOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.2.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS; SOURCE 3 ORGANISM_TAXID: 555217; SOURCE 4 STRAIN: SUBSP. MOBILIS ATCC 10988, DSMZ 424; SOURCE 5 GENE: ZMOBDRAFT_1643; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS BETA-PROPELLER, GLUTAMINYL CYCLASE, CYCLOTRANSFERASE, PYROGLUTAMATE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.PARTHIER,D.R.CARRILLO,M.T.STUBBS REVDAT 3 01-NOV-23 3NOM 1 REMARK SEQADV LINK REVDAT 2 26-FEB-14 3NOM 1 JRNL VERSN REVDAT 1 03-NOV-10 3NOM 0 JRNL AUTH D.R.CARRILLO,C.PARTHIER,N.JANCKEL,J.GRANDKE,M.STELTER, JRNL AUTH 2 S.SCHILLING,M.BOEHME,P.NEUMANN,R.WOLF,H.U.DEMUTH,M.T.STUBBS, JRNL AUTH 3 J.U.RAHFELD JRNL TITL KINETIC AND STRUCTURAL CHARACTERIZATION OF BACTERIAL JRNL TITL 2 GLUTAMINYL CYCLASES FROM ZYMOMONAS MOBILIS AND MYXOCOCCUS JRNL TITL 3 XANTHUS JRNL REF BIOL.CHEM. V. 391 1419 2010 JRNL REFN ISSN 1431-6730 JRNL PMID 20868223 JRNL DOI 10.1515/BC.2010.130 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1588 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3794 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 109 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.54000 REMARK 3 B22 (A**2) : -1.93000 REMARK 3 B33 (A**2) : -1.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.277 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.201 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.727 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.891 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3911 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5319 ; 1.829 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 466 ; 8.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 192 ;36.543 ;23.958 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 642 ;18.194 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.805 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 570 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3002 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2314 ; 0.909 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3760 ; 1.697 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1597 ; 2.595 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1559 ; 4.069 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3NOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060087. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : CONFOCAL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23164 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: PDB ENTRY 2IWA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.52000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 HIS A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 THR A 23 REMARK 465 PRO A 24 REMARK 465 GLY A 259 REMARK 465 GLY A 260 REMARK 465 HIS A 261 REMARK 465 LYS A 262 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 THR B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 SER B 11 REMARK 465 SER B 12 REMARK 465 GLY B 13 REMARK 465 LEU B 14 REMARK 465 VAL B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 HIS B 20 REMARK 465 MET B 21 REMARK 465 ALA B 22 REMARK 465 THR B 23 REMARK 465 PRO B 24 REMARK 465 GLY B 259 REMARK 465 GLY B 260 REMARK 465 HIS B 261 REMARK 465 LYS B 262 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 61 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP B 209 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 209 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 52 32.69 71.79 REMARK 500 ASN A 62 55.52 89.30 REMARK 500 GLN A 79 142.42 -174.75 REMARK 500 LYS A 85 -37.30 -29.86 REMARK 500 GLU A 90 -132.29 -120.63 REMARK 500 LYS A 96 -108.93 51.45 REMARK 500 TRP A 130 -84.77 -102.42 REMARK 500 THR A 133 -159.09 -141.00 REMARK 500 ASN A 135 -155.68 -116.26 REMARK 500 ASP A 143 28.50 -150.29 REMARK 500 HIS A 167 64.14 20.82 REMARK 500 GLU A 173 18.19 85.01 REMARK 500 ASN A 175 -123.13 -118.60 REMARK 500 GLN A 190 13.57 85.56 REMARK 500 ASP A 225 -154.52 -130.70 REMARK 500 ASN A 228 121.63 173.97 REMARK 500 THR A 242 -158.33 -149.06 REMARK 500 LEU A 245 12.91 59.57 REMARK 500 ASP B 40 108.61 -49.54 REMARK 500 THR B 41 0.79 -69.67 REMARK 500 ASN B 62 58.28 155.59 REMARK 500 GLN B 79 142.48 -170.89 REMARK 500 GLU B 90 -136.15 -114.72 REMARK 500 LYS B 96 -108.90 46.54 REMARK 500 TRP B 130 -92.14 -102.46 REMARK 500 THR B 133 -156.80 -139.27 REMARK 500 ASN B 135 -155.55 -112.90 REMARK 500 ASP B 143 22.84 -148.48 REMARK 500 ASN B 175 -125.99 -117.88 REMARK 500 ASP B 181 60.46 37.97 REMARK 500 ASP B 225 -153.32 -118.74 REMARK 500 ASN B 228 130.56 -175.16 REMARK 500 THR B 242 -157.84 -142.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 263 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 48 O REMARK 620 2 GLU A 176 OE2 74.8 REMARK 620 3 GLU A 176 OE1 97.9 51.7 REMARK 620 4 LEU A 177 O 162.6 90.6 79.5 REMARK 620 5 GLU A 178 OE2 110.2 159.4 142.3 80.4 REMARK 620 6 ILE A 230 O 88.3 118.7 74.2 107.2 81.8 REMARK 620 7 HOH A 314 O 81.0 76.0 125.2 86.5 84.8 158.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 263 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 48 O REMARK 620 2 GLU B 176 OE1 99.6 REMARK 620 3 GLU B 176 OE2 74.2 49.6 REMARK 620 4 LEU B 177 O 167.6 75.1 94.1 REMARK 620 5 GLU B 178 OE2 100.0 140.2 170.2 90.9 REMARK 620 6 ILE B 230 O 77.8 77.2 112.1 111.3 73.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 264 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NOK RELATED DB: PDB REMARK 900 RELATED ID: 3NOL RELATED DB: PDB DBREF 3NOM A 22 262 UNP C5TI01 C5TI01_ZYMMO 43 283 DBREF 3NOM B 22 262 UNP C5TI01 C5TI01_ZYMMO 43 283 SEQADV 3NOM MET A 1 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM GLY A 2 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM SER A 3 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM THR A 4 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS A 5 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS A 6 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS A 7 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS A 8 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS A 9 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS A 10 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM SER A 11 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM SER A 12 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM GLY A 13 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM LEU A 14 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM VAL A 15 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM PRO A 16 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM ARG A 17 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM GLY A 18 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM SER A 19 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS A 20 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM MET A 21 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM MET B 1 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM GLY B 2 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM SER B 3 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM THR B 4 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS B 5 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS B 6 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS B 7 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS B 8 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS B 9 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS B 10 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM SER B 11 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM SER B 12 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM GLY B 13 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM LEU B 14 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM VAL B 15 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM PRO B 16 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM ARG B 17 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM GLY B 18 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM SER B 19 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM HIS B 20 UNP C5TI01 EXPRESSION TAG SEQADV 3NOM MET B 21 UNP C5TI01 EXPRESSION TAG SEQRES 1 A 262 MET GLY SER THR HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 262 LEU VAL PRO ARG GLY SER HIS MET ALA THR PRO SER ILE SEQRES 3 A 262 PRO ILE TYR ASP TYR GLN ILE VAL HIS SER TYR PRO HIS SEQRES 4 A 262 ASP THR LYS ALA PHE THR GLU GLY PHE PHE TYR ARG ASN SEQRES 5 A 262 GLY TYR PHE TYR GLU SER THR GLY LEU ASN GLY ARG SER SEQRES 6 A 262 SER ILE ARG LYS VAL ASP ILE GLU SER GLY LYS THR LEU SEQRES 7 A 262 GLN GLN ILE GLU LEU GLY LYS ARG TYR PHE GLY GLU GLY SEQRES 8 A 262 ILE SER ASP TRP LYS ASP LYS ILE VAL GLY LEU THR TRP SEQRES 9 A 262 LYS ASN GLY LEU GLY PHE VAL TRP ASN ILE ARG ASN LEU SEQRES 10 A 262 ARG GLN VAL ARG SER PHE ASN TYR ASP GLY GLU GLY TRP SEQRES 11 A 262 GLY LEU THR HIS ASN ASP GLN TYR LEU ILE MET SER ASP SEQRES 12 A 262 GLY THR PRO VAL LEU ARG PHE LEU ASP PRO GLU SER LEU SEQRES 13 A 262 THR PRO VAL ARG THR ILE THR VAL THR ALA HIS GLY GLU SEQRES 14 A 262 GLU LEU PRO GLU LEU ASN GLU LEU GLU TRP VAL ASP GLY SEQRES 15 A 262 GLU ILE PHE ALA ASN VAL TRP GLN THR ASN LYS ILE VAL SEQRES 16 A 262 ARG ILE ASP PRO GLU THR GLY LYS VAL THR GLY ILE ILE SEQRES 17 A 262 ASP LEU ASN GLY ILE LEU ALA GLU ALA GLY PRO LEU PRO SEQRES 18 A 262 SER PRO ILE ASP VAL LEU ASN GLY ILE ALA TRP ASP LYS SEQRES 19 A 262 GLU HIS HIS ARG LEU PHE VAL THR GLY LYS LEU TRP PRO SEQRES 20 A 262 LYS VAL PHE GLU ILE THR LEU THR GLN ARG VAL GLY GLY SEQRES 21 A 262 HIS LYS SEQRES 1 B 262 MET GLY SER THR HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 262 LEU VAL PRO ARG GLY SER HIS MET ALA THR PRO SER ILE SEQRES 3 B 262 PRO ILE TYR ASP TYR GLN ILE VAL HIS SER TYR PRO HIS SEQRES 4 B 262 ASP THR LYS ALA PHE THR GLU GLY PHE PHE TYR ARG ASN SEQRES 5 B 262 GLY TYR PHE TYR GLU SER THR GLY LEU ASN GLY ARG SER SEQRES 6 B 262 SER ILE ARG LYS VAL ASP ILE GLU SER GLY LYS THR LEU SEQRES 7 B 262 GLN GLN ILE GLU LEU GLY LYS ARG TYR PHE GLY GLU GLY SEQRES 8 B 262 ILE SER ASP TRP LYS ASP LYS ILE VAL GLY LEU THR TRP SEQRES 9 B 262 LYS ASN GLY LEU GLY PHE VAL TRP ASN ILE ARG ASN LEU SEQRES 10 B 262 ARG GLN VAL ARG SER PHE ASN TYR ASP GLY GLU GLY TRP SEQRES 11 B 262 GLY LEU THR HIS ASN ASP GLN TYR LEU ILE MET SER ASP SEQRES 12 B 262 GLY THR PRO VAL LEU ARG PHE LEU ASP PRO GLU SER LEU SEQRES 13 B 262 THR PRO VAL ARG THR ILE THR VAL THR ALA HIS GLY GLU SEQRES 14 B 262 GLU LEU PRO GLU LEU ASN GLU LEU GLU TRP VAL ASP GLY SEQRES 15 B 262 GLU ILE PHE ALA ASN VAL TRP GLN THR ASN LYS ILE VAL SEQRES 16 B 262 ARG ILE ASP PRO GLU THR GLY LYS VAL THR GLY ILE ILE SEQRES 17 B 262 ASP LEU ASN GLY ILE LEU ALA GLU ALA GLY PRO LEU PRO SEQRES 18 B 262 SER PRO ILE ASP VAL LEU ASN GLY ILE ALA TRP ASP LYS SEQRES 19 B 262 GLU HIS HIS ARG LEU PHE VAL THR GLY LYS LEU TRP PRO SEQRES 20 B 262 LYS VAL PHE GLU ILE THR LEU THR GLN ARG VAL GLY GLY SEQRES 21 B 262 HIS LYS HET CA A 263 1 HET GOL A 264 6 HET SO4 A 265 5 HET CA B 263 1 HET SO4 B 264 5 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CA 2(CA 2+) FORMUL 4 GOL C3 H8 O3 FORMUL 5 SO4 2(O4 S 2-) FORMUL 8 HOH *109(H2 O) HELIX 1 1 GLY A 212 ALA A 217 5 6 HELIX 2 2 GLY B 212 ALA B 217 5 6 SHEET 1 A 8 LEU A 174 VAL A 180 0 SHEET 2 A 8 GLU A 183 VAL A 188 -1 O GLU A 183 N VAL A 180 SHEET 3 A 8 LYS A 193 ILE A 197 -1 O ILE A 197 N ILE A 184 SHEET 4 A 8 VAL A 204 ASP A 209 -1 O ILE A 208 N ILE A 194 SHEET 5 A 8 ILE A 28 PRO A 38 1 N TYR A 29 O ILE A 207 SHEET 6 A 8 LYS A 248 GLN A 256 -1 O GLU A 251 N VAL A 34 SHEET 7 A 8 ARG A 238 GLY A 243 -1 N VAL A 241 O PHE A 250 SHEET 8 A 8 LEU A 227 ASP A 233 -1 N ALA A 231 O PHE A 240 SHEET 1 B 4 PHE A 44 ARG A 51 0 SHEET 2 B 4 TYR A 54 GLY A 60 -1 O SER A 58 N GLU A 46 SHEET 3 B 4 SER A 65 VAL A 70 -1 O SER A 66 N THR A 59 SHEET 4 B 4 THR A 77 GLU A 82 -1 O LEU A 78 N LYS A 69 SHEET 1 C 4 GLY A 89 TRP A 95 0 SHEET 2 C 4 LYS A 98 THR A 103 -1 O LEU A 102 N GLU A 90 SHEET 3 C 4 LEU A 108 ASN A 113 -1 O TRP A 112 N ILE A 99 SHEET 4 C 4 GLN A 119 ASN A 124 -1 O PHE A 123 N GLY A 109 SHEET 1 D 4 LEU A 132 HIS A 134 0 SHEET 2 D 4 LEU A 139 MET A 141 -1 O ILE A 140 N THR A 133 SHEET 3 D 4 VAL A 147 LEU A 151 -1 O LEU A 151 N LEU A 139 SHEET 4 D 4 PRO A 158 THR A 163 -1 O VAL A 159 N PHE A 150 SHEET 1 E 2 THR A 165 ALA A 166 0 SHEET 2 E 2 GLU A 169 GLU A 170 -1 O GLU A 169 N ALA A 166 SHEET 1 F 8 LEU B 174 VAL B 180 0 SHEET 2 F 8 GLU B 183 VAL B 188 -1 O PHE B 185 N GLU B 178 SHEET 3 F 8 LYS B 193 ILE B 197 -1 O VAL B 195 N ALA B 186 SHEET 4 F 8 VAL B 204 ASP B 209 -1 O THR B 205 N ARG B 196 SHEET 5 F 8 ILE B 28 PRO B 38 1 N TYR B 29 O ILE B 207 SHEET 6 F 8 LYS B 248 GLN B 256 -1 O GLU B 251 N VAL B 34 SHEET 7 F 8 ARG B 238 GLY B 243 -1 N VAL B 241 O PHE B 250 SHEET 8 F 8 LEU B 227 ASP B 233 -1 N ALA B 231 O PHE B 240 SHEET 1 G 4 PHE B 44 ARG B 51 0 SHEET 2 G 4 TYR B 54 GLY B 60 -1 O SER B 58 N GLU B 46 SHEET 3 G 4 SER B 65 ASP B 71 -1 O SER B 66 N THR B 59 SHEET 4 G 4 THR B 77 GLU B 82 -1 O LEU B 78 N LYS B 69 SHEET 1 H 4 GLY B 89 TRP B 95 0 SHEET 2 H 4 LYS B 98 THR B 103 -1 O LEU B 102 N GLU B 90 SHEET 3 H 4 LEU B 108 ASN B 113 -1 O TRP B 112 N ILE B 99 SHEET 4 H 4 GLN B 119 ASN B 124 -1 O PHE B 123 N GLY B 109 SHEET 1 I 4 LEU B 132 HIS B 134 0 SHEET 2 I 4 LEU B 139 MET B 141 -1 O ILE B 140 N THR B 133 SHEET 3 I 4 VAL B 147 LEU B 151 -1 O LEU B 151 N LEU B 139 SHEET 4 I 4 PRO B 158 THR B 163 -1 O VAL B 159 N PHE B 150 SHEET 1 J 2 THR B 165 ALA B 166 0 SHEET 2 J 2 GLU B 169 GLU B 170 -1 O GLU B 169 N ALA B 166 LINK O PHE A 48 CA CA A 263 1555 1555 2.19 LINK OE2 GLU A 176 CA CA A 263 1555 1555 2.40 LINK OE1 GLU A 176 CA CA A 263 1555 1555 2.57 LINK O LEU A 177 CA CA A 263 1555 1555 2.22 LINK OE2 GLU A 178 CA CA A 263 1555 1555 2.16 LINK O ILE A 230 CA CA A 263 1555 1555 2.37 LINK CA CA A 263 O HOH A 314 1555 1555 2.33 LINK O PHE B 48 CA CA B 263 1555 1555 2.27 LINK OE1 GLU B 176 CA CA B 263 1555 1555 2.48 LINK OE2 GLU B 176 CA CA B 263 1555 1555 2.63 LINK O LEU B 177 CA CA B 263 1555 1555 2.37 LINK OE2 GLU B 178 CA CA B 263 1555 1555 2.27 LINK O ILE B 230 CA CA B 263 1555 1555 2.40 CISPEP 1 SER A 222 PRO A 223 0 -3.85 CISPEP 2 SER B 222 PRO B 223 0 -6.91 SITE 1 AC1 6 PHE A 48 GLU A 176 LEU A 177 GLU A 178 SITE 2 AC1 6 ILE A 230 HOH A 314 SITE 1 AC2 5 PHE B 48 GLU B 176 LEU B 177 GLU B 178 SITE 2 AC2 5 ILE B 230 SITE 1 AC3 8 GLU A 46 TRP A 104 TRP A 130 ASN A 175 SITE 2 AC3 8 TRP A 189 LYS A 244 HOH A 278 HIS B 236 SITE 1 AC4 4 TRP A 179 ASP A 181 GLY A 182 LYS A 234 SITE 1 AC5 4 TRP B 179 ASP B 181 GLY B 182 LYS B 234 CRYST1 58.380 85.040 64.860 90.00 108.16 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017129 0.000000 0.005619 0.00000 SCALE2 0.000000 0.011759 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016226 0.00000