data_3NPB # _entry.id 3NPB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3NPB NDB NA0609 RCSB RCSB060110 WWPDB D_1000060110 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2013-08-07 _pdbx_database_PDB_obs_spr.pdb_id 4KQY _pdbx_database_PDB_obs_spr.replace_pdb_id 3NPB _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 3NPB _pdbx_database_status.recvd_initial_deposition_date 2010-06-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # _audit_author.name 'Lu, C.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'SAM Recognition and Conformational Switching Mechanism in the Bacillus subtilis yitJ S Box/SAM-I Riboswitch.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 404 _citation.page_first 803 _citation.page_last 818 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20951706 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.09.059 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lu, C.' 1 primary 'Ding, F.' 2 primary 'Chowdhury, A.' 3 primary 'Pradhan, V.' 4 primary 'Tomsic, J.' 5 primary 'Holmes, W.M.' 6 primary 'Henkin, T.M.' 7 primary 'Ke, A.' 8 # _cell.entry_id 3NPB _cell.length_a 58.732 _cell.length_b 58.732 _cell.length_c 204.091 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NPB _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TL5 RNA' 38572.141 1 ? ? ? ? 2 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GUUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUGGCGAAAGCCAUGACCAAGGUG CUAAAUCCAGCAAGCUCGAACAGCUUGGAAGAUAAGAAC ; _entity_poly.pdbx_seq_one_letter_code_can ;GUUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUGGCGAAAGCCAUGACCAAGGUG CUAAAUCCAGCAAGCUCGAACAGCUUGGAAGAUAAGAAC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 U n 1 3 U n 1 4 C n 1 5 U n 1 6 U n 1 7 A n 1 8 U n 1 9 C n 1 10 A n 1 11 A n 1 12 G n 1 13 A n 1 14 G n 1 15 A n 1 16 A n 1 17 G n 1 18 C n 1 19 A n 1 20 G n 1 21 A n 1 22 G n 1 23 G n 1 24 G n 1 25 A n 1 26 C n 1 27 U n 1 28 G n 1 29 G n 1 30 C n 1 31 C n 1 32 C n 1 33 G n 1 34 A n 1 35 C n 1 36 G n 1 37 A n 1 38 A n 1 39 G n 1 40 C n 1 41 U n 1 42 U n 1 43 C n 1 44 A n 1 45 G n 1 46 C n 1 47 A n 1 48 A n 1 49 C n 1 50 C n 1 51 G n 1 52 G n 1 53 U n 1 54 G n 1 55 U n 1 56 A n 1 57 A n 1 58 U n 1 59 G n 1 60 G n 1 61 C n 1 62 G n 1 63 A n 1 64 A n 1 65 A n 1 66 G n 1 67 C n 1 68 C n 1 69 A n 1 70 U n 1 71 G n 1 72 A n 1 73 C n 1 74 C n 1 75 A n 1 76 A n 1 77 G n 1 78 G n 1 79 U n 1 80 G n 1 81 C n 1 82 U n 1 83 A n 1 84 A n 1 85 A n 1 86 U n 1 87 C n 1 88 C n 1 89 A n 1 90 G n 1 91 C n 1 92 A n 1 93 A n 1 94 G n 1 95 C n 1 96 U n 1 97 C n 1 98 G n 1 99 A n 1 100 A n 1 101 C n 1 102 A n 1 103 G n 1 104 C n 1 105 U n 1 106 U n 1 107 G n 1 108 G n 1 109 A n 1 110 A n 1 111 G n 1 112 A n 1 113 U n 1 114 A n 1 115 A n 1 116 G n 1 117 A n 1 118 A n 1 119 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene yitJ _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus subtilis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1423 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3NPB _struct_ref.pdbx_db_accession 3NPB _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ;GUUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUGGCGAAAGCCAUGACCAAGGUG CUAAAUCCAGCAAGCUCGAACAGCUUGGAAGAUAAGAAC ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NPB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 119 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3NPB _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 118 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 118 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 3NPB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_percent_sol 53.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.987 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.987 # _reflns.entry_id 3NPB _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 24.680 _reflns.d_resolution_high 3.010 _reflns.number_obs 8152 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3NPB _refine.ls_number_reflns_obs 7352 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.68 _refine.ls_d_res_high 3.02 _refine.ls_percent_reflns_obs 94.8 _refine.ls_R_factor_obs 0.232 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.228 _refine.ls_R_factor_R_free 0.270 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.800 _refine.ls_number_reflns_R_free 802 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.920 _refine.B_iso_mean 87.03 _refine.aniso_B[1][1] 2.17000 _refine.aniso_B[2][2] 2.17000 _refine.aniso_B[3][3] -3.26000 _refine.aniso_B[1][2] 1.09000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 2GIS _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.510 _refine.overall_SU_ML 0.510 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 36.726 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2556 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 2593 _refine_hist.d_res_high 3.02 _refine_hist.d_res_low 20.68 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.021 ? 2896 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.641 3.000 ? 4513 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.119 0.200 ? 599 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.029 0.020 ? 1266 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.854 1.500 ? 5 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.449 2.000 ? 7 'X-RAY DIFFRACTION' ? r_scbond_it 3.875 3.000 ? 2891 'X-RAY DIFFRACTION' ? r_scangle_it 6.397 4.500 ? 4506 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.02 _refine_ls_shell.d_res_low 3.09 _refine_ls_shell.number_reflns_R_work 505 _refine_ls_shell.R_factor_R_work 0.4070 _refine_ls_shell.percent_reflns_obs 89.81 _refine_ls_shell.R_factor_R_free 0.4030 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 59 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3NPB _struct.title 'TL5 RNA structure' _struct.pdbx_descriptor 119-MER _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NPB _struct_keywords.pdbx_keywords 'RNA REGULATOR' _struct_keywords.text 'S box, SAM-I, Riboswitch, translation, SAM, gene regulation, RNA REGULATOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A A 11 OP2 ? ? ? 1_555 C MG . MG ? ? A A 10 A MG 201 1_555 ? ? ? ? ? ? ? 2.346 ? metalc2 metalc ? ? A C 26 OP1 ? ? ? 1_555 D MG . MG ? ? A C 25 A MG 202 1_555 ? ? ? ? ? ? ? 2.718 ? metalc3 metalc ? ? A U 86 OP2 ? ? ? 1_555 C MG . MG ? ? A U 85 A MG 201 1_555 ? ? ? ? ? ? ? 2.796 ? metalc4 metalc ? ? A G 24 OP2 ? ? ? 1_555 D MG . MG ? ? A G 23 A MG 202 1_555 ? ? ? ? ? ? ? 2.999 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 119 N3 ? ? A G 0 A C 118 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog2 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 118 N1 ? ? A U 1 A A 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 118 N6 ? ? A U 1 A A 117 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A U 3 N3 ? ? ? 1_555 A A 117 N1 ? ? A U 2 A A 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A U 3 O4 ? ? ? 1_555 A A 117 N6 ? ? A U 2 A A 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 116 N1 ? ? A C 3 A G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 116 O6 ? ? A C 3 A G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 116 N2 ? ? A C 3 A G 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 114 N6 ? ? A U 4 A A 113 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? hydrog10 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 115 N1 ? ? A U 4 A A 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 115 N6 ? ? A U 4 A A 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 114 N1 ? ? A U 5 A A 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 114 N6 ? ? A U 5 A A 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 113 N3 ? ? A A 6 A U 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 113 O4 ? ? A A 6 A U 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 112 N1 ? ? A U 7 A A 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 112 N6 ? ? A U 7 A A 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 111 N1 ? ? A C 8 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 111 O6 ? ? A C 8 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 111 N2 ? ? A C 8 A G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 11 A C 45 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog22 hydrog ? ? A A 13 N3 ? ? ? 1_555 A G 45 N2 ? ? A A 12 A G 44 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? hydrog23 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 13 A C 42 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog24 hydrog ? ? A A 15 N1 ? ? ? 1_555 A U 42 N3 ? ? A A 14 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A A 15 N6 ? ? ? 1_555 A U 42 O4 ? ? A A 14 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 15 A U 40 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? hydrog27 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 16 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 39 N1 ? ? A C 17 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 39 O6 ? ? A C 17 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 39 N2 ? ? A C 17 A G 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A A 19 N3 ? ? ? 1_555 A A 38 N6 ? ? A A 18 A A 37 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? hydrog34 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 21 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog37 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 22 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 23 A C 29 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog41 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 84 N1 ? ? A G 23 A A 83 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog42 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 84 N6 ? ? A G 23 A A 83 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog43 hydrog ? ? A A 25 N6 ? ? ? 1_555 A A 110 N3 ? ? A A 24 A A 109 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? hydrog44 hydrog ? ? A C 26 N3 ? ? ? 1_555 A G 90 N2 ? ? A C 25 A G 89 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog45 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 89 N1 ? ? A U 26 A A 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 89 N6 ? ? A U 26 A A 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 27 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 27 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 27 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A G 29 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 28 A C 86 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog51 hydrog ? ? A C 31 O2 ? ? ? 1_555 A A 83 N6 ? ? A C 30 A A 82 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog52 hydrog ? ? A G 45 O6 ? ? ? 1_555 A A 76 N6 ? ? A G 44 A A 75 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog53 hydrog ? ? A G 45 N1 ? ? ? 1_555 A C 81 N3 ? ? A G 44 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A G 45 N2 ? ? ? 1_555 A C 81 O2 ? ? A G 44 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A G 45 O6 ? ? ? 1_555 A C 81 N4 ? ? A G 44 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? A C 46 N3 ? ? ? 1_555 A G 80 N1 ? ? A C 45 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog57 hydrog ? ? A C 46 N4 ? ? ? 1_555 A G 80 O6 ? ? A C 45 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog58 hydrog ? ? A C 46 O2 ? ? ? 1_555 A G 80 N2 ? ? A C 45 A G 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A A 48 N3 ? ? ? 1_555 A C 49 N4 ? ? A A 47 A C 48 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog60 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 78 N1 ? ? A C 48 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 78 O6 ? ? A C 48 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 78 N2 ? ? A C 48 A G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A C 50 N4 ? ? ? 1_555 A A 75 N1 ? ? A C 49 A A 74 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? hydrog64 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 77 N1 ? ? A C 49 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 77 O6 ? ? A C 49 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 77 N2 ? ? A C 49 A G 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 50 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 50 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 50 A C 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 73 N3 ? ? A G 51 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog71 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 73 O2 ? ? A G 51 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog72 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 73 N4 ? ? A G 51 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog73 hydrog ? ? A U 53 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 52 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog74 hydrog ? ? A U 53 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 52 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog75 hydrog ? ? A G 54 N1 ? ? ? 1_555 A G 71 O6 ? ? A G 53 A G 70 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? hydrog76 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 70 N3 ? ? A A 56 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog77 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 70 O4 ? ? A A 56 A U 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog78 hydrog ? ? A U 58 N3 ? ? ? 1_555 A A 69 N1 ? ? A U 57 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog79 hydrog ? ? A U 58 O4 ? ? ? 1_555 A A 69 N6 ? ? A U 57 A A 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog80 hydrog ? ? A G 59 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 58 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog81 hydrog ? ? A G 59 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 58 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog82 hydrog ? ? A G 59 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 58 A C 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog83 hydrog ? ? A G 60 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 59 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog84 hydrog ? ? A G 60 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 59 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog85 hydrog ? ? A G 60 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 59 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog86 hydrog ? ? A C 61 O2 ? ? ? 1_555 A G 66 N2 ? ? A C 60 A G 65 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog87 hydrog ? ? A G 62 N2 ? ? ? 1_555 A A 65 N7 ? ? A G 61 A A 64 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog88 hydrog ? ? A U 86 N3 ? ? ? 1_555 A A 110 N1 ? ? A U 85 A A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog89 hydrog ? ? A U 86 O4 ? ? ? 1_555 A A 110 N6 ? ? A U 85 A A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog90 hydrog ? ? A C 91 N3 ? ? ? 1_555 A G 107 N1 ? ? A C 90 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog91 hydrog ? ? A C 91 N4 ? ? ? 1_555 A G 107 O6 ? ? A C 90 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog92 hydrog ? ? A C 91 O2 ? ? ? 1_555 A G 107 N2 ? ? A C 90 A G 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog93 hydrog ? ? A A 92 N1 ? ? ? 1_555 A U 106 N3 ? ? A A 91 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog94 hydrog ? ? A A 92 N6 ? ? ? 1_555 A U 106 O4 ? ? A A 91 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog95 hydrog ? ? A G 94 N1 ? ? ? 1_555 A C 104 N3 ? ? A G 93 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog96 hydrog ? ? A G 94 N2 ? ? ? 1_555 A C 104 O2 ? ? A G 93 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog97 hydrog ? ? A G 94 O6 ? ? ? 1_555 A C 104 N4 ? ? A G 93 A C 103 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog98 hydrog ? ? A C 95 N3 ? ? ? 1_555 A G 103 N1 ? ? A C 94 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog99 hydrog ? ? A C 95 N4 ? ? ? 1_555 A G 103 O6 ? ? A C 94 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog100 hydrog ? ? A C 95 O2 ? ? ? 1_555 A G 103 N2 ? ? A C 94 A G 102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE SAM A 119' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 201' AC3 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 A A 7 ? A A 6 . ? 1_555 ? 2 AC1 11 U A 8 ? U A 7 . ? 1_555 ? 3 AC1 11 G A 12 ? G A 11 . ? 1_555 ? 4 AC1 11 A A 47 ? A A 46 . ? 1_555 ? 5 AC1 11 A A 48 ? A A 47 . ? 1_555 ? 6 AC1 11 C A 49 ? C A 48 . ? 1_555 ? 7 AC1 11 U A 79 ? U A 78 . ? 1_555 ? 8 AC1 11 G A 80 ? G A 79 . ? 1_555 ? 9 AC1 11 C A 81 ? C A 80 . ? 1_555 ? 10 AC1 11 U A 113 ? U A 112 . ? 1_555 ? 11 AC1 11 A A 114 ? A A 113 . ? 1_555 ? 12 AC2 2 A A 11 ? A A 10 . ? 1_555 ? 13 AC2 2 U A 86 ? U A 85 . ? 1_555 ? 14 AC3 2 G A 24 ? G A 23 . ? 1_555 ? 15 AC3 2 C A 26 ? C A 25 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NPB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NPB _atom_sites.fract_transf_matrix[1][1] 0.017026 _atom_sites.fract_transf_matrix[1][2] 0.009830 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019661 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004900 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 0 0 G G A . n A 1 2 U 2 1 1 U U A . n A 1 3 U 3 2 2 U U A . n A 1 4 C 4 3 3 C C A . n A 1 5 U 5 4 4 U U A . n A 1 6 U 6 5 5 U U A . n A 1 7 A 7 6 6 A A A . n A 1 8 U 8 7 7 U U A . n A 1 9 C 9 8 8 C C A . n A 1 10 A 10 9 9 A A A . n A 1 11 A 11 10 10 A A A . n A 1 12 G 12 11 11 G G A . n A 1 13 A 13 12 12 A A A . n A 1 14 G 14 13 13 G G A . n A 1 15 A 15 14 14 A A A . n A 1 16 A 16 15 15 A A A . n A 1 17 G 17 16 16 G G A . n A 1 18 C 18 17 17 C C A . n A 1 19 A 19 18 18 A A A . n A 1 20 G 20 19 19 G G A . n A 1 21 A 21 20 20 A A A . n A 1 22 G 22 21 21 G G A . n A 1 23 G 23 22 22 G G A . n A 1 24 G 24 23 23 G G A . n A 1 25 A 25 24 24 A A A . n A 1 26 C 26 25 25 C C A . n A 1 27 U 27 26 26 U U A . n A 1 28 G 28 27 27 G G A . n A 1 29 G 29 28 28 G G A . n A 1 30 C 30 29 29 C C A . n A 1 31 C 31 30 30 C C A . n A 1 32 C 32 31 31 C C A . n A 1 33 G 33 32 32 G G A . n A 1 34 A 34 33 33 A A A . n A 1 35 C 35 34 34 C C A . n A 1 36 G 36 35 35 G G A . n A 1 37 A 37 36 36 A A A . n A 1 38 A 38 37 37 A A A . n A 1 39 G 39 38 38 G G A . n A 1 40 C 40 39 39 C C A . n A 1 41 U 41 40 40 U U A . n A 1 42 U 42 41 41 U U A . n A 1 43 C 43 42 42 C C A . n A 1 44 A 44 43 43 A A A . n A 1 45 G 45 44 44 G G A . n A 1 46 C 46 45 45 C C A . n A 1 47 A 47 46 46 A A A . n A 1 48 A 48 47 47 A A A . n A 1 49 C 49 48 48 C C A . n A 1 50 C 50 49 49 C C A . n A 1 51 G 51 50 50 G G A . n A 1 52 G 52 51 51 G G A . n A 1 53 U 53 52 52 U U A . n A 1 54 G 54 53 53 G G A . n A 1 55 U 55 54 54 U U A . n A 1 56 A 56 55 55 A A A . n A 1 57 A 57 56 56 A A A . n A 1 58 U 58 57 57 U U A . n A 1 59 G 59 58 58 G G A . n A 1 60 G 60 59 59 G G A . n A 1 61 C 61 60 60 C C A . n A 1 62 G 62 61 61 G G A . n A 1 63 A 63 62 62 A A A . n A 1 64 A 64 63 63 A A A . n A 1 65 A 65 64 64 A A A . n A 1 66 G 66 65 65 G G A . n A 1 67 C 67 66 66 C C A . n A 1 68 C 68 67 67 C C A . n A 1 69 A 69 68 68 A A A . n A 1 70 U 70 69 69 U U A . n A 1 71 G 71 70 70 G G A . n A 1 72 A 72 71 71 A A A . n A 1 73 C 73 72 72 C C A . n A 1 74 C 74 73 73 C C A . n A 1 75 A 75 74 74 A A A . n A 1 76 A 76 75 75 A A A . n A 1 77 G 77 76 76 G G A . n A 1 78 G 78 77 77 G G A . n A 1 79 U 79 78 78 U U A . n A 1 80 G 80 79 79 G G A . n A 1 81 C 81 80 80 C C A . n A 1 82 U 82 81 81 U U A . n A 1 83 A 83 82 82 A A A . n A 1 84 A 84 83 83 A A A . n A 1 85 A 85 84 84 A A A . n A 1 86 U 86 85 85 U U A . n A 1 87 C 87 86 86 C C A . n A 1 88 C 88 87 87 C C A . n A 1 89 A 89 88 88 A A A . n A 1 90 G 90 89 89 G G A . n A 1 91 C 91 90 90 C C A . n A 1 92 A 92 91 91 A A A . n A 1 93 A 93 92 92 A A A . n A 1 94 G 94 93 93 G G A . n A 1 95 C 95 94 94 C C A . n A 1 96 U 96 95 95 U U A . n A 1 97 C 97 96 96 C C A . n A 1 98 G 98 97 97 G G A . n A 1 99 A 99 98 98 A A A . n A 1 100 A 100 99 99 A A A . n A 1 101 C 101 100 100 C C A . n A 1 102 A 102 101 101 A A A . n A 1 103 G 103 102 102 G G A . n A 1 104 C 104 103 103 C C A . n A 1 105 U 105 104 104 U U A . n A 1 106 U 106 105 105 U U A . n A 1 107 G 107 106 106 G G A . n A 1 108 G 108 107 107 G G A . n A 1 109 A 109 108 108 A A A . n A 1 110 A 110 109 109 A A A . n A 1 111 G 111 110 110 G G A . n A 1 112 A 112 111 111 A A A . n A 1 113 U 113 112 112 U U A . n A 1 114 A 114 113 113 A A A . n A 1 115 A 115 114 114 A A A . n A 1 116 G 116 115 115 G G A . n A 1 117 A 117 116 116 A A A . n A 1 118 A 118 117 117 A A A . n A 1 119 C 119 118 118 C C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM 1 119 119 SAM SAM A . C 3 MG 1 201 201 MG MG A . D 3 MG 1 202 202 MG MG A . E 4 HOH 1 120 120 HOH HOH A . E 4 HOH 2 121 121 HOH HOH A . E 4 HOH 3 122 122 HOH HOH A . E 4 HOH 4 123 123 HOH HOH A . E 4 HOH 5 124 124 HOH HOH A . E 4 HOH 6 125 125 HOH HOH A . E 4 HOH 7 126 126 HOH HOH A . E 4 HOH 8 127 127 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1290 ? 1 MORE -11 ? 1 'SSA (A^2)' 37930 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 11 ? A A 10 ? 1_555 MG ? C MG . ? A MG 201 ? 1_555 OP2 ? A U 86 ? A U 85 ? 1_555 92.6 ? 2 OP1 ? A C 26 ? A C 25 ? 1_555 MG ? D MG . ? A MG 202 ? 1_555 OP2 ? A G 24 ? A G 23 ? 1_555 92.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-03 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2013-08-07 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -3.8047 -10.3698 19.2708 0.0974 -0.0673 0.1104 -0.0479 0.0236 0.0798 30.9007 1.7784 71.6019 -4.4683 -35.7252 11.0230 0.2172 -1.3516 1.2866 -2.3311 1.3552 -1.6125 0.9158 -1.2653 -1.5724 'X-RAY DIFFRACTION' 2 ? refined 0.4678 -21.3276 27.4330 0.3100 0.3731 -0.0641 -0.1717 -0.0306 0.1140 0.6645 1.6403 7.4577 1.0440 2.2261 3.4975 -0.0902 0.0069 0.1255 -0.0504 0.7077 -0.0582 1.2697 -0.5532 -0.6175 'X-RAY DIFFRACTION' 3 ? refined 14.3400 -13.1069 2.2172 0.3695 -0.0981 0.2792 -0.0651 0.3594 -0.1341 1.0672 0.6530 0.9441 0.3779 0.5517 0.7802 -0.3255 0.0451 0.0689 -0.9767 -0.3108 -0.8927 1.1198 0.3251 0.6363 'X-RAY DIFFRACTION' 4 ? refined 14.1287 2.6748 13.8317 0.1804 -0.1394 0.3796 -0.2427 0.3702 -0.3008 9.6838 0.3616 3.7560 1.5258 -0.6028 -0.7664 0.0860 -1.0949 0.3833 -0.4411 -0.2159 -0.2110 0.2047 -0.1111 0.1299 'X-RAY DIFFRACTION' 5 ? refined -20.5833 -16.4210 29.4030 0.0055 0.2624 0.1284 -0.1496 0.0431 0.1714 0.0994 2.1214 1.8743 0.2482 0.3358 -0.2165 0.0113 -0.3738 -0.0234 -0.2574 0.3714 0.6153 0.0522 0.1149 -0.3827 'X-RAY DIFFRACTION' 6 ? refined -6.0014 -31.4214 -3.3831 0.6619 -0.2258 0.0243 -0.1994 -0.2393 -0.0010 5.5942 3.1156 3.9180 2.2612 1.3960 3.3676 1.0134 -0.0307 -0.3555 0.2993 -0.4553 0.2116 0.4773 -0.2271 -0.5581 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 600 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 0 ? ? A 7 ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 111 ? ? A 118 ? ? ? ? 'X-RAY DIFFRACTION' 4 3 A 21 ? ? A 34 ? ? ? ? 'X-RAY DIFFRACTION' 5 4 A 13 ? ? A 20 ? ? ? ? 'X-RAY DIFFRACTION' 6 4 A 35 ? ? A 44 ? ? ? ? 'X-RAY DIFFRACTION' 7 5 A 48 ? ? A 75 ? ? ? ? 'X-RAY DIFFRACTION' 8 6 A 88 ? ? A 108 ? ? ? ? # _software.name REFMAC _software.classification refinement _software.version 5.4.0066 _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N9 A G 13 ? ? "C1'" A G 13 ? ? "C2'" A G 13 ? ? 123.37 114.00 9.37 1.30 N 2 1 N9 A G 19 ? ? "C1'" A G 19 ? ? "C2'" A G 19 ? ? 103.74 112.00 -8.26 1.10 N 3 1 N1 A U 52 ? ? "C1'" A U 52 ? ? "C2'" A U 52 ? ? 102.59 112.00 -9.41 1.10 N 4 1 N9 A G 53 ? ? "C1'" A G 53 ? ? "C2'" A G 53 ? ? 103.20 112.00 -8.80 1.10 N 5 1 "O4'" A G 53 ? ? "C1'" A G 53 ? ? N9 A G 53 ? ? 116.35 108.50 7.85 0.70 N 6 1 N9 A A 62 ? ? "C1'" A A 62 ? ? "C2'" A A 62 ? ? 121.98 114.00 7.98 1.30 N 7 1 "C1'" A U 85 ? ? "O4'" A U 85 ? ? "C4'" A U 85 ? ? 105.18 109.70 -4.52 0.70 N 8 1 N1 A U 85 ? ? "C1'" A U 85 ? ? "C2'" A U 85 ? ? 125.40 114.00 11.40 1.30 N 9 1 "O4'" A U 85 ? ? "C1'" A U 85 ? ? N1 A U 85 ? ? 112.89 108.50 4.39 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 19 ? ? 0.061 'SIDE CHAIN' 2 1 A A 20 ? ? 0.059 'SIDE CHAIN' 3 1 G A 53 ? ? 0.164 'SIDE CHAIN' 4 1 U A 85 ? ? 0.070 'SIDE CHAIN' 5 1 C A 87 ? ? 0.063 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3NPB 'double helix' 3NPB 'a-form double helix' 3NPB 'hairpin loop' 3NPB tetraloop 3NPB 'bulge loop' 3NPB 'mismatched base pair' 3NPB 'internal loop' 3NPB 'triple helix' 3NPB 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 119 1_555 1.223 0.406 -0.726 -7.434 5.709 12.648 1 A_G0:C118_A A 0 ? A 118 ? ? 1 1 A U 2 1_555 A A 118 1_555 0.240 -0.033 -1.001 -2.274 -36.729 -12.129 2 A_U1:A117_A A 1 ? A 117 ? 20 1 1 A U 3 1_555 A A 117 1_555 -0.710 -0.047 0.461 0.641 -16.306 -1.878 3 A_U2:A116_A A 2 ? A 116 ? 20 1 1 A C 4 1_555 A G 116 1_555 0.080 0.151 0.775 -3.408 -15.818 0.865 4 A_C3:G115_A A 3 ? A 115 ? 19 1 1 A U 5 1_555 A A 115 1_555 -0.250 0.058 0.661 -11.015 -26.581 3.496 5 A_U4:A114_A A 4 ? A 114 ? 20 1 1 A U 6 1_555 A A 114 1_555 -0.510 0.029 0.459 -3.177 -17.523 9.921 6 A_U5:A113_A A 5 ? A 113 ? 20 1 1 A A 7 1_555 A U 113 1_555 -0.249 0.014 0.238 5.835 -10.810 -2.393 7 A_A6:U112_A A 6 ? A 112 ? 20 1 1 A U 8 1_555 A A 112 1_555 -0.633 -0.292 0.314 -6.291 -9.140 -2.198 8 A_U7:A111_A A 7 ? A 111 ? 20 1 1 A C 9 1_555 A G 111 1_555 -0.132 -0.174 0.604 -3.393 -2.071 -0.205 9 A_C8:G110_A A 8 ? A 110 ? 19 1 1 A U 86 1_555 A A 110 1_555 -0.988 -0.325 0.102 -4.662 -7.423 -5.747 10 A_U85:A109_A A 85 ? A 109 ? 20 1 1 A A 38 1_555 A A 19 1_555 -6.555 -2.042 -0.123 -2.933 -11.621 6.682 11 A_A37:A18_A A 37 ? A 18 ? ? ? 1 A G 39 1_555 A C 18 1_555 1.288 0.149 -0.241 -3.607 -16.776 4.612 12 A_G38:C17_A A 38 ? A 17 ? 19 1 1 A C 40 1_555 A G 17 1_555 0.983 -0.335 -0.137 1.392 -13.267 0.626 13 A_C39:G16_A A 39 ? A 16 ? 19 1 1 A U 41 1_555 A A 16 1_555 1.543 0.019 0.528 -4.304 -7.927 -14.041 14 A_U40:A15_A A 40 ? A 15 ? ? ? 1 A U 42 1_555 A A 15 1_555 0.806 0.140 0.086 -2.319 -18.466 -5.337 15 A_U41:A14_A A 41 ? A 14 ? 20 1 1 A C 43 1_555 A G 14 1_555 0.363 0.359 0.677 -14.638 -8.610 8.522 16 A_C42:G13_A A 42 ? A 13 ? ? 1 1 A G 45 1_555 A C 81 1_555 -0.432 -0.230 -0.062 -9.449 -17.498 6.633 17 A_G44:C80_A A 44 ? A 80 ? 19 1 1 A C 46 1_555 A G 80 1_555 0.570 -0.333 0.179 -11.331 -15.306 2.927 18 A_C45:G79_A A 45 ? A 79 ? 19 1 1 A G 22 1_555 A C 32 1_555 -0.028 -0.242 -0.568 -6.205 -1.510 0.715 19 A_G21:C31_A A 21 ? A 31 ? 19 1 1 A G 23 1_555 A C 31 1_555 0.485 0.097 0.094 -0.367 -4.115 -5.686 20 A_G22:C30_A A 22 ? A 30 ? 19 1 1 A G 24 1_555 A C 30 1_555 0.444 0.351 0.361 6.696 -7.946 7.254 21 A_G23:C29_A A 23 ? A 29 ? ? 1 1 A C 87 1_555 A G 29 1_555 0.192 0.320 -0.769 18.283 -27.592 0.258 22 A_C86:G28_A A 86 ? A 28 ? ? 1 1 A C 88 1_555 A G 28 1_555 0.921 -0.696 0.491 -7.565 -9.941 -3.423 23 A_C87:G27_A A 87 ? A 27 ? 19 1 1 A A 89 1_555 A U 27 1_555 0.335 -0.500 0.973 3.276 -17.275 -3.441 24 A_A88:U26_A A 88 ? A 26 ? 20 1 1 A G 90 1_555 A C 26 1_555 1.049 0.535 0.351 -14.079 -31.395 0.415 25 A_G89:C25_A A 89 ? A 25 ? ? ? 1 A C 49 1_555 A G 78 1_555 0.103 0.086 -0.421 13.295 2.450 -3.740 26 A_C48:G77_A A 48 ? A 77 ? 19 1 1 A C 50 1_555 A G 77 1_555 -0.309 -0.077 -0.483 -1.448 -9.867 8.981 27 A_C49:G76_A A 49 ? A 76 ? 19 1 1 A G 51 1_555 A C 74 1_555 0.665 -0.211 -0.031 -11.169 -13.628 -5.618 28 A_G50:C73_A A 50 ? A 73 ? 19 1 1 A G 52 1_555 A C 73 1_555 1.165 0.193 -0.013 -2.291 -7.649 4.409 29 A_G51:C72_A A 51 ? A 72 ? 19 1 1 A U 53 1_555 A A 72 1_555 -1.826 0.074 1.093 -12.328 -12.800 -4.581 30 A_U52:A71_A A 52 ? A 71 ? 20 1 1 A G 54 1_555 A G 71 1_555 3.339 1.239 0.494 17.894 16.458 -38.491 31 A_G53:G70_A A 53 ? A 70 ? ? 1 1 A A 57 1_555 A U 70 1_555 1.085 -0.169 0.429 -5.970 -7.657 2.182 32 A_A56:U69_A A 56 ? A 69 ? 20 1 1 A U 58 1_555 A A 69 1_555 -0.500 -0.040 -0.818 7.000 -14.235 10.433 33 A_U57:A68_A A 57 ? A 68 ? 20 1 1 A G 59 1_555 A C 68 1_555 -0.882 -0.158 -0.110 -5.387 -15.727 9.201 34 A_G58:C67_A A 58 ? A 67 ? 19 1 1 A G 60 1_555 A C 67 1_555 0.947 -0.163 -0.856 -23.769 -13.568 -5.463 35 A_G59:C66_A A 59 ? A 66 ? 19 1 1 A C 61 1_555 A G 66 1_555 -0.379 1.042 0.526 -15.932 -3.953 14.612 36 A_C60:G65_A A 60 ? A 65 ? ? ? 1 A G 62 1_555 A A 65 1_555 7.350 -5.712 1.571 14.049 -17.419 -20.748 37 A_G61:A64_A A 61 ? A 64 ? ? ? 1 A C 91 1_555 A G 107 1_555 0.002 -0.373 0.040 2.127 -22.938 2.893 38 A_C90:G106_A A 90 ? A 106 ? 19 1 1 A A 92 1_555 A U 106 1_555 1.529 -0.146 -0.021 -7.264 -8.252 5.370 39 A_A91:U105_A A 91 ? A 105 ? 20 1 1 A G 94 1_555 A C 104 1_555 1.286 -0.102 0.199 0.694 -22.043 -2.023 40 A_G93:C103_A A 93 ? A 103 ? 19 1 1 A C 95 1_555 A G 103 1_555 -1.085 -0.360 0.076 9.671 -21.047 -5.086 41 A_C94:G102_A A 94 ? A 102 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 119 1_555 A U 2 1_555 A A 118 1_555 -0.526 -1.351 3.159 0.990 22.388 28.182 -4.865 0.972 1.657 39.095 -1.728 35.864 1 AA_G0U1:A117C118_AA A 0 ? A 118 ? A 1 ? A 117 ? 1 A U 2 1_555 A A 118 1_555 A U 3 1_555 A A 117 1_555 0.452 -1.032 3.367 -11.440 5.854 25.304 -3.421 -3.488 2.625 12.395 24.224 28.333 2 AA_U1U2:A116A117_AA A 1 ? A 117 ? A 2 ? A 116 ? 1 A U 3 1_555 A A 117 1_555 A C 4 1_555 A G 116 1_555 -0.420 -1.370 3.375 -4.524 7.316 39.251 -2.831 0.095 3.108 10.734 6.638 40.146 3 AA_U2C3:G115A116_AA A 2 ? A 116 ? A 3 ? A 115 ? 1 A C 4 1_555 A G 116 1_555 A U 5 1_555 A A 115 1_555 0.114 -1.480 3.251 2.667 9.731 26.417 -5.111 0.336 2.555 20.373 -5.584 28.246 4 AA_C3U4:A114G115_AA A 3 ? A 115 ? A 4 ? A 114 ? 1 A U 5 1_555 A A 115 1_555 A U 6 1_555 A A 114 1_555 0.708 -0.942 3.045 1.963 4.326 37.207 -1.987 -0.865 2.953 6.746 -3.061 37.498 5 AA_U4U5:A113A114_AA A 4 ? A 114 ? A 5 ? A 113 ? 1 A U 6 1_555 A A 114 1_555 A A 7 1_555 A U 113 1_555 -0.645 -1.326 2.888 -0.228 10.410 29.650 -4.050 1.157 2.307 19.596 0.429 31.387 6 AA_U5A6:U112A113_AA A 5 ? A 113 ? A 6 ? A 112 ? 1 A A 7 1_555 A U 113 1_555 A U 8 1_555 A A 112 1_555 0.161 -1.410 3.717 -1.939 17.471 30.093 -5.109 -0.575 2.530 30.589 3.395 34.749 7 AA_A6U7:A111U112_AA A 6 ? A 112 ? A 7 ? A 111 ? 1 A U 8 1_555 A A 112 1_555 A C 9 1_555 A G 111 1_555 0.139 -1.526 3.272 -1.966 7.148 36.155 -3.338 -0.474 2.916 11.371 3.128 36.882 8 AA_U7C8:G110A111_AA A 7 ? A 111 ? A 8 ? A 110 ? 1 A C 9 1_555 A G 111 1_555 A U 86 1_555 A A 110 1_555 -0.867 -2.365 3.090 -0.960 8.053 31.135 -5.510 1.417 2.443 14.694 1.752 32.149 9 AA_C8U85:A109G110_AA A 8 ? A 110 ? A 85 ? A 109 ? 1 A A 38 1_555 A A 19 1_555 A G 39 1_555 A C 18 1_555 -0.071 -0.306 3.590 -2.804 9.272 61.237 -0.767 -0.073 3.516 9.041 2.734 61.925 10 AA_A37G38:C17A18_AA A 37 ? A 18 ? A 38 ? A 17 ? 1 A G 39 1_555 A C 18 1_555 A C 40 1_555 A G 17 1_555 -0.250 -0.747 3.198 1.804 4.557 30.000 -2.302 0.824 3.034 8.731 -3.456 30.388 11 AA_G38C39:G16C17_AA A 38 ? A 17 ? A 39 ? A 16 ? 1 A C 40 1_555 A G 17 1_555 A U 41 1_555 A A 16 1_555 -0.345 -2.963 3.194 -0.348 13.771 37.055 -5.728 0.477 2.013 20.807 0.526 39.448 12 AA_C39U40:A15G16_AA A 39 ? A 16 ? A 40 ? A 15 ? 1 A U 41 1_555 A A 16 1_555 A U 42 1_555 A A 15 1_555 0.467 -1.717 3.173 6.356 9.818 24.897 -5.775 0.413 2.383 21.334 -13.811 27.468 13 AA_U40U41:A14A15_AA A 40 ? A 15 ? A 41 ? A 14 ? 1 A U 42 1_555 A A 15 1_555 A C 43 1_555 A G 14 1_555 1.269 -1.111 3.467 0.247 3.338 33.318 -2.503 -2.160 3.352 5.803 -0.429 33.481 14 AA_U41C42:G13A14_AA A 41 ? A 14 ? A 42 ? A 13 ? 1 A C 43 1_555 A G 14 1_555 A G 45 1_555 A C 81 1_555 1.052 -3.661 6.212 2.302 12.270 59.659 -4.681 -0.839 5.468 12.188 -2.286 60.833 15 AA_C42G44:C80G13_AA A 42 ? A 13 ? A 44 ? A 80 ? 1 A G 45 1_555 A C 81 1_555 A C 46 1_555 A G 80 1_555 -0.407 -0.783 3.323 -1.076 -3.517 44.500 -0.700 0.435 3.381 -4.635 1.418 44.644 16 AA_G44C45:G79C80_AA A 44 ? A 80 ? A 45 ? A 79 ? 1 A G 22 1_555 A C 32 1_555 A G 23 1_555 A C 31 1_555 -0.219 -2.320 3.263 -1.344 -5.265 28.280 -3.413 0.120 3.632 -10.652 2.719 28.787 17 AA_G21G22:C30C31_AA A 21 ? A 31 ? A 22 ? A 30 ? 1 A G 23 1_555 A C 31 1_555 A G 24 1_555 A C 30 1_555 0.583 -2.149 3.265 2.003 -2.243 26.851 -4.011 -0.722 3.463 -4.811 -4.297 27.016 18 AA_G22G23:C29C30_AA A 22 ? A 30 ? A 23 ? A 29 ? 1 A G 24 1_555 A C 30 1_555 A C 87 1_555 A G 29 1_555 -3.150 -0.430 2.918 5.447 3.751 51.734 -0.699 3.889 2.562 4.278 -6.213 52.126 19 AA_G23C86:G28C29_AA A 23 ? A 29 ? A 86 ? A 28 ? 1 A C 87 1_555 A G 29 1_555 A C 88 1_555 A G 28 1_555 -0.640 -1.363 4.108 -7.401 8.800 39.365 -3.134 -0.082 3.786 12.737 10.713 40.946 20 AA_C86C87:G27G28_AA A 86 ? A 28 ? A 87 ? A 27 ? 1 A C 88 1_555 A G 28 1_555 A A 89 1_555 A U 27 1_555 0.079 -1.647 2.398 -0.728 11.858 31.598 -4.085 -0.212 1.686 20.876 1.281 33.704 21 AA_C87A88:U26G27_AA A 87 ? A 27 ? A 88 ? A 26 ? 1 A A 89 1_555 A U 27 1_555 A G 90 1_555 A C 26 1_555 0.452 -1.262 3.799 12.474 1.524 39.771 -1.965 0.918 3.722 2.176 -17.805 41.633 22 AA_A88G89:C25U26_AA A 88 ? A 26 ? A 89 ? A 25 ? 1 A C 49 1_555 A G 78 1_555 A C 50 1_555 A G 77 1_555 1.461 -2.410 3.540 0.855 17.097 37.020 -5.246 -2.013 2.287 25.333 -1.267 40.659 23 AA_C48C49:G76G77_AA A 48 ? A 77 ? A 49 ? A 76 ? 1 A C 50 1_555 A G 77 1_555 A G 51 1_555 A C 74 1_555 4.637 -1.897 5.229 -30.759 6.185 71.496 -1.761 -4.912 3.165 5.062 25.171 77.229 24 AA_C49G50:C73G76_AA A 49 ? A 76 ? A 50 ? A 73 ? 1 A G 51 1_555 A C 74 1_555 A G 52 1_555 A C 73 1_555 -0.529 -2.252 2.947 1.751 8.322 31.827 -5.128 1.177 2.270 14.848 -3.124 32.915 25 AA_G50G51:C72C73_AA A 50 ? A 73 ? A 51 ? A 72 ? 1 A G 52 1_555 A C 73 1_555 A U 53 1_555 A A 72 1_555 -0.451 -1.542 3.529 -6.563 11.963 20.800 -7.122 -0.892 2.346 29.401 16.130 24.835 26 AA_G51U52:A71C72_AA A 51 ? A 72 ? A 52 ? A 71 ? 1 A U 53 1_555 A A 72 1_555 A G 54 1_555 A G 71 1_555 1.043 -1.142 2.723 4.126 6.094 27.114 -3.528 -1.355 2.539 12.705 -8.600 28.077 27 AA_U52G53:G70A71_AA A 52 ? A 71 ? A 53 ? A 70 ? 1 A A 57 1_555 A U 70 1_555 A U 58 1_555 A A 69 1_555 0.636 -1.582 3.140 13.101 9.033 17.289 -6.707 2.517 2.070 24.364 -35.335 23.457 28 AA_A56U57:A68U69_AA A 56 ? A 69 ? A 57 ? A 68 ? 1 A U 58 1_555 A A 69 1_555 A G 59 1_555 A C 68 1_555 0.513 -1.268 3.623 -9.632 14.993 30.754 -4.302 -2.268 2.497 25.739 16.536 35.436 29 AA_U57G58:C67A68_AA A 57 ? A 68 ? A 58 ? A 67 ? 1 A G 59 1_555 A C 68 1_555 A G 60 1_555 A C 67 1_555 -1.152 -1.902 3.827 -0.263 10.612 40.267 -3.917 1.593 3.253 15.100 0.374 41.586 30 AA_G58G59:C66C67_AA A 58 ? A 67 ? A 59 ? A 66 ? 1 A G 60 1_555 A C 67 1_555 A C 61 1_555 A G 66 1_555 0.425 -1.393 3.245 -9.396 -6.609 23.488 -1.233 -3.570 3.121 -15.131 21.509 26.111 31 AA_G59C60:G65C66_AA A 59 ? A 66 ? A 60 ? A 65 ? 1 A C 61 1_555 A G 66 1_555 A G 62 1_555 A A 65 1_555 -2.854 -1.027 2.203 -3.565 9.962 55.716 -1.458 2.874 2.169 10.553 3.776 56.633 32 AA_C60G61:A64G65_AA A 60 ? A 65 ? A 61 ? A 64 ? 1 A C 91 1_555 A G 107 1_555 A A 92 1_555 A U 106 1_555 -0.177 -1.431 3.671 2.690 3.829 32.629 -3.236 0.814 3.460 6.771 -4.757 32.953 33 AA_C90A91:U105G106_AA A 90 ? A 106 ? A 91 ? A 105 ? 1 A A 92 1_555 A U 106 1_555 A G 94 1_555 A C 104 1_555 -0.459 -3.718 6.260 4.226 8.909 63.391 -4.210 0.768 5.710 8.424 -3.996 64.074 34 AA_A91G93:C103U105_AA A 91 ? A 105 ? A 93 ? A 103 ? 1 A G 94 1_555 A C 104 1_555 A C 95 1_555 A G 103 1_555 -0.821 -1.363 2.995 -2.582 5.714 18.271 -6.554 1.324 2.544 17.345 7.837 19.308 35 AA_G93C94:G102C103_AA A 93 ? A 103 ? A 94 ? A 102 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 S-ADENOSYLMETHIONINE SAM 3 'MAGNESIUM ION' MG 4 water HOH #