HEADER GENE REGULATION 28-JUN-10 3NPI
TITLE CRYSTAL STRUCTURE OF A TETR FAMILY REGULATORY PROTEIN (DIP1788) FROM
TITLE 2 CORYNEBACTERIUM DIPHTHERIAE AT 2.96 A RESOLUTION
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TETR FAMILY REGULATORY PROTEIN;
COMPND 3 CHAIN: A, B;
COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE;
SOURCE 3 ORGANISM_TAXID: 1717;
SOURCE 4 GENE: DIP1788;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET
KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG,
KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, GENE REGULATION
EXPDTA X-RAY DIFFRACTION
AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG)
REVDAT 5 20-NOV-24 3NPI 1 REMARK
REVDAT 4 01-FEB-23 3NPI 1 REMARK SEQADV LINK
REVDAT 3 25-OCT-17 3NPI 1 REMARK
REVDAT 2 13-FEB-13 3NPI 1 AUTHOR VERSN
REVDAT 1 18-AUG-10 3NPI 0
JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG)
JRNL TITL CRYSTAL STRUCTURE OF A TETR FAMILY REGULATORY PROTEIN
JRNL TITL 2 (DIP1788) FROM CORYNEBACTERIUM DIPHTHERIAE AT 2.96 A
JRNL TITL 3 RESOLUTION
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.96 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.8.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : NULL
REMARK 3 NUMBER OF REFLECTIONS : 12572
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.202
REMARK 3 R VALUE (WORKING SET) : 0.201
REMARK 3 FREE R VALUE : 0.222
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840
REMARK 3 FREE R VALUE TEST SET COUNT : 609
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 6
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2967
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2438
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2826
REMARK 3 BIN R VALUE (WORKING SET) : 0.2426
REMARK 3 BIN FREE R VALUE : 0.2692
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.75
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3165
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 40
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 99.73
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.89
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 3.73050
REMARK 3 B22 (A**2) : 3.73050
REMARK 3 B33 (A**2) : -7.46100
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3254 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 4416 ; 10.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1106 ; 10.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 71 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 490 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3254 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 440 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 3876 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 0.32
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.78
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.63
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -5.4418 43.6847 2.5389
REMARK 3 T TENSOR
REMARK 3 T11: -0.2623 T22: -0.1982
REMARK 3 T33: 0.1291 T12: -0.1397
REMARK 3 T13: -0.0543 T23: -0.0522
REMARK 3 L TENSOR
REMARK 3 L11: 2.6951 L22: 5.8428
REMARK 3 L33: 1.0719 L12: -0.7675
REMARK 3 L13: -1.1615 L23: 0.4531
REMARK 3 S TENSOR
REMARK 3 S11: -0.1034 S12: 0.0177 S13: -1.0505
REMARK 3 S21: -0.3443 S22: -0.0484 S23: 0.6504
REMARK 3 S31: 0.3282 S32: -0.3793 S33: 0.1519
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 5.3296 60.0661 9.7089
REMARK 3 T TENSOR
REMARK 3 T11: -0.1164 T22: -0.1083
REMARK 3 T33: -0.1796 T12: -0.0539
REMARK 3 T13: -0.0529 T23: 0.0226
REMARK 3 L TENSOR
REMARK 3 L11: 4.4145 L22: 3.6865
REMARK 3 L33: 1.9297 L12: -1.3265
REMARK 3 L13: 0.4198 L23: -0.7008
REMARK 3 S TENSOR
REMARK 3 S11: -0.1008 S12: -0.3978 S13: -0.1698
REMARK 3 S21: 0.2993 S22: -0.0823 S23: -0.2188
REMARK 3 S31: -0.0490 S32: -0.0047 S33: 0.1831
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: 1.A MET-INHIBITION PROTOCOL WAS USED
REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION.
REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO
REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET
REMARK 3 INCORPORATION. 2. SULFATES FROM THE CRYSTALLIZATION WERE MODELED
REMARK 3 INTO THE STRUCTURE. 3.ATOM RECORD CONTAINS SUM OF TLS AND
REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND
REMARK 3 RESIDUAL U FACTORS.
REMARK 4
REMARK 4 3NPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-10.
REMARK 100 THE DEPOSITION ID IS D_1000060117.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 11-FEB-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.86
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRL
REMARK 200 BEAMLINE : BL11-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97959,0.97925
REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT
REMARK 200 MONOCHROMATOR (HORIZONTAL
REMARK 200 FOCUSING)
REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING)
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12584
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960
REMARK 200 RESOLUTION RANGE LOW (A) : 29.713
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 200 DATA REDUNDANCY : NULL
REMARK 200 R MERGE (I) : 0.05600
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0600
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : 0.74300
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: MAD
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD
REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.34
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7100M AMMONIUM SULFATE, 10.0000%
REMARK 280 DIOXANE, 0.1M MES PH 6.86, VAPOR DIFFUSION,SITTING DROP,NANODROP,
REMARK 280 TEMPERATURE 277K, VAPOR DIFFUSION, SITTING DROP
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.48333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.24167
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.24167
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.48333
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT
REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT
REMARK 300 OLIGOMERIZATION STATE IN SOLUTION.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7260 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 17780 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 MSE A 1
REMARK 465 ASN A 2
REMARK 465 GLU A 3
REMARK 465 SER A 4
REMARK 465 SER A 5
REMARK 465 THR A 6
REMARK 465 HIS A 7
REMARK 465 ASP A 8
REMARK 465 SER A 9
REMARK 465 VAL A 10
REMARK 465 ALA A 11
REMARK 465 ASP A 12
REMARK 465 ASP A 13
REMARK 465 PRO A 14
REMARK 465 LEU A 228
REMARK 465 LEU A 229
REMARK 465 SER A 230
REMARK 465 THR A 231
REMARK 465 VAL A 232
REMARK 465 THR A 233
REMARK 465 GLU A 234
REMARK 465 HIS A 235
REMARK 465 VAL A 236
REMARK 465 ASP A 237
REMARK 465 GLU A 238
REMARK 465 GLU A 239
REMARK 465 GLY A 240
REMARK 465 SER A 241
REMARK 465 TYR A 242
REMARK 465 GLU A 243
REMARK 465 VAL A 244
REMARK 465 ALA A 245
REMARK 465 ALA A 246
REMARK 465 ASP A 247
REMARK 465 PRO A 248
REMARK 465 PHE A 249
REMARK 465 SER A 250
REMARK 465 GLY B 0
REMARK 465 MSE B 1
REMARK 465 ASN B 2
REMARK 465 GLU B 3
REMARK 465 SER B 4
REMARK 465 SER B 5
REMARK 465 THR B 6
REMARK 465 HIS B 7
REMARK 465 ASP B 8
REMARK 465 SER B 9
REMARK 465 VAL B 10
REMARK 465 ALA B 11
REMARK 465 ASP B 12
REMARK 465 ASP B 13
REMARK 465 PRO B 14
REMARK 465 THR B 15
REMARK 465 GLU B 16
REMARK 465 PRO B 227
REMARK 465 LEU B 228
REMARK 465 LEU B 229
REMARK 465 SER B 230
REMARK 465 THR B 231
REMARK 465 VAL B 232
REMARK 465 THR B 233
REMARK 465 GLU B 234
REMARK 465 HIS B 235
REMARK 465 VAL B 236
REMARK 465 ASP B 237
REMARK 465 GLU B 238
REMARK 465 GLU B 239
REMARK 465 GLY B 240
REMARK 465 SER B 241
REMARK 465 TYR B 242
REMARK 465 GLU B 243
REMARK 465 VAL B 244
REMARK 465 ALA B 245
REMARK 465 ALA B 246
REMARK 465 ASP B 247
REMARK 465 PRO B 248
REMARK 465 PHE B 249
REMARK 465 SER B 250
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 THR A 15 OG1 CG2
REMARK 470 GLU A 16 CG CD OE1 OE2
REMARK 470 VAL A 17 CG1 CG2
REMARK 470 LYS A 39 CE NZ
REMARK 470 GLU A 41 CG CD OE1 OE2
REMARK 470 LYS A 45 CE NZ
REMARK 470 LYS A 46 CG CD CE NZ
REMARK 470 SER A 47 OG
REMARK 470 LYS A 51 CE NZ
REMARK 470 ARG A 77 NE CZ NH1 NH2
REMARK 470 THR A 79 OG1 CG2
REMARK 470 GLU A 81 CG CD OE1 OE2
REMARK 470 TYR A 84 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 LEU A 85 CG CD1 CD2
REMARK 470 SER A 87 OG
REMARK 470 ALA A 100 CB
REMARK 470 LYS A 125 CD CE NZ
REMARK 470 GLU A 128 CG CD OE1 OE2
REMARK 470 SER A 130 OG
REMARK 470 ILE A 138 CG1 CG2 CD1
REMARK 470 LEU A 140 CG CD1 CD2
REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2
REMARK 470 LEU A 148 CG CD1 CD2
REMARK 470 LEU A 215 CG CD1 CD2
REMARK 470 LYS A 216 CG CD CE NZ
REMARK 470 ASP A 219 CG OD1 OD2
REMARK 470 VAL B 17 CG1 CG2
REMARK 470 SER B 28 OG
REMARK 470 GLU B 32 CD OE1 OE2
REMARK 470 LYS B 39 CE NZ
REMARK 470 LYS B 46 CE NZ
REMARK 470 SER B 47 OG
REMARK 470 LYS B 51 CG CD CE NZ
REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2
REMARK 470 SER B 87 OG
REMARK 470 LYS B 125 CG CD CE NZ
REMARK 470 GLU B 128 CG CD OE1 OE2
REMARK 470 ILE B 138 CG1 CG2 CD1
REMARK 470 LEU B 140 CG CD1 CD2
REMARK 470 LYS B 216 CG CD CE NZ
REMARK 470 SER B 217 OG
REMARK 470 ARG B 226 CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 120 -75.09 -83.29
REMARK 500 LYS A 125 53.56 39.13
REMARK 500 GLU A 128 47.05 -99.76
REMARK 500 LEU B 120 -75.01 -83.51
REMARK 500 LYS B 125 53.73 38.96
REMARK 500 GLU B 128 47.04 -99.60
REMARK 500 SER B 136 7.11 -67.27
REMARK 500 SER B 178 31.97 -82.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 251
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 252
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 253
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 254
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 255
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 256
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 257
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 258
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 398877 RELATED DB: TARGETDB
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG
REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING
REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE.
DBREF 3NPI A 1 250 UNP Q6NFU8 Q6NFU8_CORDI 1 250
DBREF 3NPI B 1 250 UNP Q6NFU8 Q6NFU8_CORDI 1 250
SEQADV 3NPI GLY A 0 UNP Q6NFU8 EXPRESSION TAG
SEQADV 3NPI GLY B 0 UNP Q6NFU8 EXPRESSION TAG
SEQRES 1 A 251 GLY MSE ASN GLU SER SER THR HIS ASP SER VAL ALA ASP
SEQRES 2 A 251 ASP PRO THR GLU VAL SER THR ASP THR VAL LEU ASP ILE
SEQRES 3 A 251 ALA LEU SER LEU PHE SER GLU LEU GLY PHE SER ASP ALA
SEQRES 4 A 251 LYS LEU GLU ALA ILE ALA LYS LYS SER GLY MSE SER LYS
SEQRES 5 A 251 ARG MSE ILE HIS TYR HIS PHE GLY ASP LYS ARG GLY LEU
SEQRES 6 A 251 TYR ILE CYS CYS LEU GLU GLU ALA VAL ARG ARG LEU ARG
SEQRES 7 A 251 PRO THR ALA GLU GLU MSE TYR LEU ALA SER ALA VAL PRO
SEQRES 8 A 251 VAL GLU GLY VAL ARG THR ILE VAL GLU ALA VAL PHE HIS
SEQRES 9 A 251 ARG TYR VAL GLN HIS PRO GLU ALA VAL ARG MSE LEU GLN
SEQRES 10 A 251 MSE GLU ASN LEU HIS HIS TYR GLY LYS VAL ALA GLU ALA
SEQRES 11 A 251 SER PRO LEU SER ASP GLN SER ALA ILE THR LEU GLN LEU
SEQRES 12 A 251 ASP ARG LEU LEU MSE LEU GLY GLN ASP ALA GLY ALA PHE
SEQRES 13 A 251 ARG PRO GLY ILE SER ALA GLN ASP VAL PHE THR LEU ILE
SEQRES 14 A 251 ALA SER ILE ALA VAL PHE ARG ILE ASN SER ARG SER THR
SEQRES 15 A 251 THR LEU ASN LEU TYR GLY ILE ASP MSE MSE ASN GLY ASP
SEQRES 16 A 251 ASN THR ASP GLY MSE ARG ARG MSE ALA VAL ASP THR VAL
SEQRES 17 A 251 LEU ALA PHE LEU THR SER ASN LEU LYS SER ALA ASP GLU
SEQRES 18 A 251 ASP SER TYR LEU SER ARG PRO LEU LEU SER THR VAL THR
SEQRES 19 A 251 GLU HIS VAL ASP GLU GLU GLY SER TYR GLU VAL ALA ALA
SEQRES 20 A 251 ASP PRO PHE SER
SEQRES 1 B 251 GLY MSE ASN GLU SER SER THR HIS ASP SER VAL ALA ASP
SEQRES 2 B 251 ASP PRO THR GLU VAL SER THR ASP THR VAL LEU ASP ILE
SEQRES 3 B 251 ALA LEU SER LEU PHE SER GLU LEU GLY PHE SER ASP ALA
SEQRES 4 B 251 LYS LEU GLU ALA ILE ALA LYS LYS SER GLY MSE SER LYS
SEQRES 5 B 251 ARG MSE ILE HIS TYR HIS PHE GLY ASP LYS ARG GLY LEU
SEQRES 6 B 251 TYR ILE CYS CYS LEU GLU GLU ALA VAL ARG ARG LEU ARG
SEQRES 7 B 251 PRO THR ALA GLU GLU MSE TYR LEU ALA SER ALA VAL PRO
SEQRES 8 B 251 VAL GLU GLY VAL ARG THR ILE VAL GLU ALA VAL PHE HIS
SEQRES 9 B 251 ARG TYR VAL GLN HIS PRO GLU ALA VAL ARG MSE LEU GLN
SEQRES 10 B 251 MSE GLU ASN LEU HIS HIS TYR GLY LYS VAL ALA GLU ALA
SEQRES 11 B 251 SER PRO LEU SER ASP GLN SER ALA ILE THR LEU GLN LEU
SEQRES 12 B 251 ASP ARG LEU LEU MSE LEU GLY GLN ASP ALA GLY ALA PHE
SEQRES 13 B 251 ARG PRO GLY ILE SER ALA GLN ASP VAL PHE THR LEU ILE
SEQRES 14 B 251 ALA SER ILE ALA VAL PHE ARG ILE ASN SER ARG SER THR
SEQRES 15 B 251 THR LEU ASN LEU TYR GLY ILE ASP MSE MSE ASN GLY ASP
SEQRES 16 B 251 ASN THR ASP GLY MSE ARG ARG MSE ALA VAL ASP THR VAL
SEQRES 17 B 251 LEU ALA PHE LEU THR SER ASN LEU LYS SER ALA ASP GLU
SEQRES 18 B 251 ASP SER TYR LEU SER ARG PRO LEU LEU SER THR VAL THR
SEQRES 19 B 251 GLU HIS VAL ASP GLU GLU GLY SER TYR GLU VAL ALA ALA
SEQRES 20 B 251 ASP PRO PHE SER
MODRES 3NPI MSE A 49 MET SELENOMETHIONINE
MODRES 3NPI MSE A 53 MET SELENOMETHIONINE
MODRES 3NPI MSE A 83 MET SELENOMETHIONINE
MODRES 3NPI MSE A 114 MET SELENOMETHIONINE
MODRES 3NPI MSE A 117 MET SELENOMETHIONINE
MODRES 3NPI MSE A 147 MET SELENOMETHIONINE
MODRES 3NPI MSE A 190 MET SELENOMETHIONINE
MODRES 3NPI MSE A 191 MET SELENOMETHIONINE
MODRES 3NPI MSE A 199 MET SELENOMETHIONINE
MODRES 3NPI MSE A 202 MET SELENOMETHIONINE
MODRES 3NPI MSE B 49 MET SELENOMETHIONINE
MODRES 3NPI MSE B 53 MET SELENOMETHIONINE
MODRES 3NPI MSE B 83 MET SELENOMETHIONINE
MODRES 3NPI MSE B 114 MET SELENOMETHIONINE
MODRES 3NPI MSE B 117 MET SELENOMETHIONINE
MODRES 3NPI MSE B 147 MET SELENOMETHIONINE
MODRES 3NPI MSE B 190 MET SELENOMETHIONINE
MODRES 3NPI MSE B 191 MET SELENOMETHIONINE
MODRES 3NPI MSE B 199 MET SELENOMETHIONINE
MODRES 3NPI MSE B 202 MET SELENOMETHIONINE
HET MSE A 49 8
HET MSE A 53 8
HET MSE A 83 8
HET MSE A 114 8
HET MSE A 117 8
HET MSE A 147 8
HET MSE A 190 8
HET MSE A 191 8
HET MSE A 199 8
HET MSE A 202 8
HET MSE B 49 8
HET MSE B 53 8
HET MSE B 83 8
HET MSE B 114 8
HET MSE B 117 8
HET MSE B 147 8
HET MSE B 190 8
HET MSE B 191 8
HET MSE B 199 8
HET MSE B 202 8
HET SO4 A 252 5
HET SO4 A 255 5
HET SO4 A 257 5
HET SO4 A 258 5
HET SO4 B 251 5
HET SO4 B 253 5
HET SO4 B 254 5
HET SO4 B 256 5
HETNAM MSE SELENOMETHIONINE
HETNAM SO4 SULFATE ION
FORMUL 1 MSE 20(C5 H11 N O2 SE)
FORMUL 3 SO4 8(O4 S 2-)
HELIX 1 1 SER A 18 ALA A 38 1 21
HELIX 2 2 LYS A 39 GLY A 48 1 10
HELIX 3 3 SER A 50 GLY A 59 1 10
HELIX 4 4 ASP A 60 LEU A 76 1 17
HELIX 5 5 THR A 79 TYR A 84 1 6
HELIX 6 6 VAL A 89 HIS A 108 1 20
HELIX 7 7 HIS A 108 HIS A 121 1 14
HELIX 8 8 GLN A 135 ALA A 152 1 18
HELIX 9 9 SER A 160 SER A 178 1 19
HELIX 10 10 SER A 178 GLY A 187 1 10
HELIX 11 11 ASN A 192 THR A 212 1 21
HELIX 12 12 SER B 18 ALA B 38 1 21
HELIX 13 13 LYS B 39 GLY B 48 1 10
HELIX 14 14 SER B 50 GLY B 59 1 10
HELIX 15 15 ASP B 60 ARG B 77 1 18
HELIX 16 16 VAL B 89 HIS B 108 1 20
HELIX 17 17 HIS B 108 HIS B 121 1 14
HELIX 18 18 GLN B 135 ALA B 152 1 18
HELIX 19 19 SER B 160 SER B 178 1 19
HELIX 20 20 SER B 178 GLY B 187 1 10
HELIX 21 21 ASN B 192 THR B 212 1 21
LINK C GLY A 48 N MSE A 49 1555 1555 1.36
LINK C MSE A 49 N SER A 50 1555 1555 1.34
LINK C ARG A 52 N MSE A 53 1555 1555 1.35
LINK C MSE A 53 N ILE A 54 1555 1555 1.36
LINK C GLU A 82 N MSE A 83 1555 1555 1.36
LINK C MSE A 83 N TYR A 84 1555 1555 1.35
LINK C ARG A 113 N MSE A 114 1555 1555 1.35
LINK C MSE A 114 N LEU A 115 1555 1555 1.35
LINK C GLN A 116 N MSE A 117 1555 1555 1.36
LINK C MSE A 117 N GLU A 118 1555 1555 1.35
LINK C LEU A 146 N MSE A 147 1555 1555 1.34
LINK C MSE A 147 N LEU A 148 1555 1555 1.35
LINK C ASP A 189 N MSE A 190 1555 1555 1.35
LINK C MSE A 190 N MSE A 191 1555 1555 1.35
LINK C MSE A 191 N ASN A 192 1555 1555 1.36
LINK C GLY A 198 N MSE A 199 1555 1555 1.36
LINK C MSE A 199 N ARG A 200 1555 1555 1.36
LINK C ARG A 201 N MSE A 202 1555 1555 1.35
LINK C MSE A 202 N ALA A 203 1555 1555 1.36
LINK C GLY B 48 N MSE B 49 1555 1555 1.35
LINK C MSE B 49 N SER B 50 1555 1555 1.34
LINK C ARG B 52 N MSE B 53 1555 1555 1.35
LINK C MSE B 53 N ILE B 54 1555 1555 1.36
LINK C GLU B 82 N MSE B 83 1555 1555 1.34
LINK C MSE B 83 N TYR B 84 1555 1555 1.35
LINK C ARG B 113 N MSE B 114 1555 1555 1.35
LINK C MSE B 114 N LEU B 115 1555 1555 1.35
LINK C GLN B 116 N MSE B 117 1555 1555 1.36
LINK C MSE B 117 N GLU B 118 1555 1555 1.35
LINK C LEU B 146 N MSE B 147 1555 1555 1.34
LINK C MSE B 147 N LEU B 148 1555 1555 1.35
LINK C ASP B 189 N MSE B 190 1555 1555 1.35
LINK C MSE B 190 N MSE B 191 1555 1555 1.35
LINK C MSE B 191 N ASN B 192 1555 1555 1.35
LINK C GLY B 198 N MSE B 199 1555 1555 1.36
LINK C MSE B 199 N ARG B 200 1555 1555 1.36
LINK C ARG B 201 N MSE B 202 1555 1555 1.35
LINK C MSE B 202 N ALA B 203 1555 1555 1.36
SITE 1 AC1 3 ARG B 74 ARG B 104 HIS B 108
SITE 1 AC2 6 HIS A 122 LYS A 125 VAL A 126 ALA A 127
SITE 2 AC2 6 GLU A 128 SER B 180
SITE 1 AC3 4 ALA B 38 LYS B 39 LEU B 40 LYS B 61
SITE 1 AC4 4 SER A 180 HIS B 122 LYS B 125 ALA B 127
SITE 1 AC5 4 ALA A 38 LYS A 39 LEU A 40 LYS A 61
SITE 1 AC6 3 ARG B 95 ARG B 200 ARG B 201
SITE 1 AC7 3 ARG A 74 ARG A 104 HIS A 108
SITE 1 AC8 2 ARG A 200 ARG A 201
CRYST1 137.238 137.238 54.725 90.00 90.00 120.00 P 32 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007287 0.004207 0.000000 0.00000
SCALE2 0.000000 0.008414 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018273 0.00000