HEADER GENE REGULATION 28-JUN-10 3NPI TITLE CRYSTAL STRUCTURE OF A TETR FAMILY REGULATORY PROTEIN (DIP1788) FROM TITLE 2 CORYNEBACTERIUM DIPHTHERIAE AT 2.96 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR FAMILY REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORYNEBACTERIUM DIPHTHERIAE; SOURCE 3 ORGANISM_TAXID: 1717; SOURCE 4 GENE: DIP1788; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 20-NOV-24 3NPI 1 REMARK REVDAT 4 01-FEB-23 3NPI 1 REMARK SEQADV LINK REVDAT 3 25-OCT-17 3NPI 1 REMARK REVDAT 2 13-FEB-13 3NPI 1 AUTHOR VERSN REVDAT 1 18-AUG-10 3NPI 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A TETR FAMILY REGULATORY PROTEIN JRNL TITL 2 (DIP1788) FROM CORYNEBACTERIUM DIPHTHERIAE AT 2.96 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 12572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.24 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2967 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2438 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2826 REMARK 3 BIN R VALUE (WORKING SET) : 0.2426 REMARK 3 BIN FREE R VALUE : 0.2692 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.75 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 141 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3165 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 99.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.73050 REMARK 3 B22 (A**2) : 3.73050 REMARK 3 B33 (A**2) : -7.46100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3254 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4416 ; 10.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1106 ; 10.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 71 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 490 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3254 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 440 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3876 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.32 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.78 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 13.63 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.4418 43.6847 2.5389 REMARK 3 T TENSOR REMARK 3 T11: -0.2623 T22: -0.1982 REMARK 3 T33: 0.1291 T12: -0.1397 REMARK 3 T13: -0.0543 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 2.6951 L22: 5.8428 REMARK 3 L33: 1.0719 L12: -0.7675 REMARK 3 L13: -1.1615 L23: 0.4531 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: 0.0177 S13: -1.0505 REMARK 3 S21: -0.3443 S22: -0.0484 S23: 0.6504 REMARK 3 S31: 0.3282 S32: -0.3793 S33: 0.1519 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 5.3296 60.0661 9.7089 REMARK 3 T TENSOR REMARK 3 T11: -0.1164 T22: -0.1083 REMARK 3 T33: -0.1796 T12: -0.0539 REMARK 3 T13: -0.0529 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 4.4145 L22: 3.6865 REMARK 3 L33: 1.9297 L12: -1.3265 REMARK 3 L13: 0.4198 L23: -0.7008 REMARK 3 S TENSOR REMARK 3 S11: -0.1008 S12: -0.3978 S13: -0.1698 REMARK 3 S21: 0.2993 S22: -0.0823 S23: -0.2188 REMARK 3 S31: -0.0490 S32: -0.0047 S33: 0.1831 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. SULFATES FROM THE CRYSTALLIZATION WERE MODELED REMARK 3 INTO THE STRUCTURE. 3.ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. REMARK 4 REMARK 4 3NPI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.86 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97959,0.97925 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12584 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 29.713 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7100M AMMONIUM SULFATE, 10.0000% REMARK 280 DIOXANE, 0.1M MES PH 6.86, VAPOR DIFFUSION,SITTING DROP,NANODROP, REMARK 280 TEMPERATURE 277K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.48333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.24167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 18.24167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.48333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -150.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 HIS A 7 REMARK 465 ASP A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 ASP A 12 REMARK 465 ASP A 13 REMARK 465 PRO A 14 REMARK 465 LEU A 228 REMARK 465 LEU A 229 REMARK 465 SER A 230 REMARK 465 THR A 231 REMARK 465 VAL A 232 REMARK 465 THR A 233 REMARK 465 GLU A 234 REMARK 465 HIS A 235 REMARK 465 VAL A 236 REMARK 465 ASP A 237 REMARK 465 GLU A 238 REMARK 465 GLU A 239 REMARK 465 GLY A 240 REMARK 465 SER A 241 REMARK 465 TYR A 242 REMARK 465 GLU A 243 REMARK 465 VAL A 244 REMARK 465 ALA A 245 REMARK 465 ALA A 246 REMARK 465 ASP A 247 REMARK 465 PRO A 248 REMARK 465 PHE A 249 REMARK 465 SER A 250 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 ASN B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 THR B 6 REMARK 465 HIS B 7 REMARK 465 ASP B 8 REMARK 465 SER B 9 REMARK 465 VAL B 10 REMARK 465 ALA B 11 REMARK 465 ASP B 12 REMARK 465 ASP B 13 REMARK 465 PRO B 14 REMARK 465 THR B 15 REMARK 465 GLU B 16 REMARK 465 PRO B 227 REMARK 465 LEU B 228 REMARK 465 LEU B 229 REMARK 465 SER B 230 REMARK 465 THR B 231 REMARK 465 VAL B 232 REMARK 465 THR B 233 REMARK 465 GLU B 234 REMARK 465 HIS B 235 REMARK 465 VAL B 236 REMARK 465 ASP B 237 REMARK 465 GLU B 238 REMARK 465 GLU B 239 REMARK 465 GLY B 240 REMARK 465 SER B 241 REMARK 465 TYR B 242 REMARK 465 GLU B 243 REMARK 465 VAL B 244 REMARK 465 ALA B 245 REMARK 465 ALA B 246 REMARK 465 ASP B 247 REMARK 465 PRO B 248 REMARK 465 PHE B 249 REMARK 465 SER B 250 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 15 OG1 CG2 REMARK 470 GLU A 16 CG CD OE1 OE2 REMARK 470 VAL A 17 CG1 CG2 REMARK 470 LYS A 39 CE NZ REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 45 CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 SER A 47 OG REMARK 470 LYS A 51 CE NZ REMARK 470 ARG A 77 NE CZ NH1 NH2 REMARK 470 THR A 79 OG1 CG2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 TYR A 84 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 85 CG CD1 CD2 REMARK 470 SER A 87 OG REMARK 470 ALA A 100 CB REMARK 470 LYS A 125 CD CE NZ REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 SER A 130 OG REMARK 470 ILE A 138 CG1 CG2 CD1 REMARK 470 LEU A 140 CG CD1 CD2 REMARK 470 ARG A 144 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 148 CG CD1 CD2 REMARK 470 LEU A 215 CG CD1 CD2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 VAL B 17 CG1 CG2 REMARK 470 SER B 28 OG REMARK 470 GLU B 32 CD OE1 OE2 REMARK 470 LYS B 39 CE NZ REMARK 470 LYS B 46 CE NZ REMARK 470 SER B 47 OG REMARK 470 LYS B 51 CG CD CE NZ REMARK 470 ARG B 52 CG CD NE CZ NH1 NH2 REMARK 470 SER B 87 OG REMARK 470 LYS B 125 CG CD CE NZ REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 ILE B 138 CG1 CG2 CD1 REMARK 470 LEU B 140 CG CD1 CD2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 470 SER B 217 OG REMARK 470 ARG B 226 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 120 -75.09 -83.29 REMARK 500 LYS A 125 53.56 39.13 REMARK 500 GLU A 128 47.05 -99.76 REMARK 500 LEU B 120 -75.01 -83.51 REMARK 500 LYS B 125 53.73 38.96 REMARK 500 GLU B 128 47.04 -99.60 REMARK 500 SER B 136 7.11 -67.27 REMARK 500 SER B 178 31.97 -82.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 258 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 398877 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NPI A 1 250 UNP Q6NFU8 Q6NFU8_CORDI 1 250 DBREF 3NPI B 1 250 UNP Q6NFU8 Q6NFU8_CORDI 1 250 SEQADV 3NPI GLY A 0 UNP Q6NFU8 EXPRESSION TAG SEQADV 3NPI GLY B 0 UNP Q6NFU8 EXPRESSION TAG SEQRES 1 A 251 GLY MSE ASN GLU SER SER THR HIS ASP SER VAL ALA ASP SEQRES 2 A 251 ASP PRO THR GLU VAL SER THR ASP THR VAL LEU ASP ILE SEQRES 3 A 251 ALA LEU SER LEU PHE SER GLU LEU GLY PHE SER ASP ALA SEQRES 4 A 251 LYS LEU GLU ALA ILE ALA LYS LYS SER GLY MSE SER LYS SEQRES 5 A 251 ARG MSE ILE HIS TYR HIS PHE GLY ASP LYS ARG GLY LEU SEQRES 6 A 251 TYR ILE CYS CYS LEU GLU GLU ALA VAL ARG ARG LEU ARG SEQRES 7 A 251 PRO THR ALA GLU GLU MSE TYR LEU ALA SER ALA VAL PRO SEQRES 8 A 251 VAL GLU GLY VAL ARG THR ILE VAL GLU ALA VAL PHE HIS SEQRES 9 A 251 ARG TYR VAL GLN HIS PRO GLU ALA VAL ARG MSE LEU GLN SEQRES 10 A 251 MSE GLU ASN LEU HIS HIS TYR GLY LYS VAL ALA GLU ALA SEQRES 11 A 251 SER PRO LEU SER ASP GLN SER ALA ILE THR LEU GLN LEU SEQRES 12 A 251 ASP ARG LEU LEU MSE LEU GLY GLN ASP ALA GLY ALA PHE SEQRES 13 A 251 ARG PRO GLY ILE SER ALA GLN ASP VAL PHE THR LEU ILE SEQRES 14 A 251 ALA SER ILE ALA VAL PHE ARG ILE ASN SER ARG SER THR SEQRES 15 A 251 THR LEU ASN LEU TYR GLY ILE ASP MSE MSE ASN GLY ASP SEQRES 16 A 251 ASN THR ASP GLY MSE ARG ARG MSE ALA VAL ASP THR VAL SEQRES 17 A 251 LEU ALA PHE LEU THR SER ASN LEU LYS SER ALA ASP GLU SEQRES 18 A 251 ASP SER TYR LEU SER ARG PRO LEU LEU SER THR VAL THR SEQRES 19 A 251 GLU HIS VAL ASP GLU GLU GLY SER TYR GLU VAL ALA ALA SEQRES 20 A 251 ASP PRO PHE SER SEQRES 1 B 251 GLY MSE ASN GLU SER SER THR HIS ASP SER VAL ALA ASP SEQRES 2 B 251 ASP PRO THR GLU VAL SER THR ASP THR VAL LEU ASP ILE SEQRES 3 B 251 ALA LEU SER LEU PHE SER GLU LEU GLY PHE SER ASP ALA SEQRES 4 B 251 LYS LEU GLU ALA ILE ALA LYS LYS SER GLY MSE SER LYS SEQRES 5 B 251 ARG MSE ILE HIS TYR HIS PHE GLY ASP LYS ARG GLY LEU SEQRES 6 B 251 TYR ILE CYS CYS LEU GLU GLU ALA VAL ARG ARG LEU ARG SEQRES 7 B 251 PRO THR ALA GLU GLU MSE TYR LEU ALA SER ALA VAL PRO SEQRES 8 B 251 VAL GLU GLY VAL ARG THR ILE VAL GLU ALA VAL PHE HIS SEQRES 9 B 251 ARG TYR VAL GLN HIS PRO GLU ALA VAL ARG MSE LEU GLN SEQRES 10 B 251 MSE GLU ASN LEU HIS HIS TYR GLY LYS VAL ALA GLU ALA SEQRES 11 B 251 SER PRO LEU SER ASP GLN SER ALA ILE THR LEU GLN LEU SEQRES 12 B 251 ASP ARG LEU LEU MSE LEU GLY GLN ASP ALA GLY ALA PHE SEQRES 13 B 251 ARG PRO GLY ILE SER ALA GLN ASP VAL PHE THR LEU ILE SEQRES 14 B 251 ALA SER ILE ALA VAL PHE ARG ILE ASN SER ARG SER THR SEQRES 15 B 251 THR LEU ASN LEU TYR GLY ILE ASP MSE MSE ASN GLY ASP SEQRES 16 B 251 ASN THR ASP GLY MSE ARG ARG MSE ALA VAL ASP THR VAL SEQRES 17 B 251 LEU ALA PHE LEU THR SER ASN LEU LYS SER ALA ASP GLU SEQRES 18 B 251 ASP SER TYR LEU SER ARG PRO LEU LEU SER THR VAL THR SEQRES 19 B 251 GLU HIS VAL ASP GLU GLU GLY SER TYR GLU VAL ALA ALA SEQRES 20 B 251 ASP PRO PHE SER MODRES 3NPI MSE A 49 MET SELENOMETHIONINE MODRES 3NPI MSE A 53 MET SELENOMETHIONINE MODRES 3NPI MSE A 83 MET SELENOMETHIONINE MODRES 3NPI MSE A 114 MET SELENOMETHIONINE MODRES 3NPI MSE A 117 MET SELENOMETHIONINE MODRES 3NPI MSE A 147 MET SELENOMETHIONINE MODRES 3NPI MSE A 190 MET SELENOMETHIONINE MODRES 3NPI MSE A 191 MET SELENOMETHIONINE MODRES 3NPI MSE A 199 MET SELENOMETHIONINE MODRES 3NPI MSE A 202 MET SELENOMETHIONINE MODRES 3NPI MSE B 49 MET SELENOMETHIONINE MODRES 3NPI MSE B 53 MET SELENOMETHIONINE MODRES 3NPI MSE B 83 MET SELENOMETHIONINE MODRES 3NPI MSE B 114 MET SELENOMETHIONINE MODRES 3NPI MSE B 117 MET SELENOMETHIONINE MODRES 3NPI MSE B 147 MET SELENOMETHIONINE MODRES 3NPI MSE B 190 MET SELENOMETHIONINE MODRES 3NPI MSE B 191 MET SELENOMETHIONINE MODRES 3NPI MSE B 199 MET SELENOMETHIONINE MODRES 3NPI MSE B 202 MET SELENOMETHIONINE HET MSE A 49 8 HET MSE A 53 8 HET MSE A 83 8 HET MSE A 114 8 HET MSE A 117 8 HET MSE A 147 8 HET MSE A 190 8 HET MSE A 191 8 HET MSE A 199 8 HET MSE A 202 8 HET MSE B 49 8 HET MSE B 53 8 HET MSE B 83 8 HET MSE B 114 8 HET MSE B 117 8 HET MSE B 147 8 HET MSE B 190 8 HET MSE B 191 8 HET MSE B 199 8 HET MSE B 202 8 HET SO4 A 252 5 HET SO4 A 255 5 HET SO4 A 257 5 HET SO4 A 258 5 HET SO4 B 251 5 HET SO4 B 253 5 HET SO4 B 254 5 HET SO4 B 256 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 3 SO4 8(O4 S 2-) HELIX 1 1 SER A 18 ALA A 38 1 21 HELIX 2 2 LYS A 39 GLY A 48 1 10 HELIX 3 3 SER A 50 GLY A 59 1 10 HELIX 4 4 ASP A 60 LEU A 76 1 17 HELIX 5 5 THR A 79 TYR A 84 1 6 HELIX 6 6 VAL A 89 HIS A 108 1 20 HELIX 7 7 HIS A 108 HIS A 121 1 14 HELIX 8 8 GLN A 135 ALA A 152 1 18 HELIX 9 9 SER A 160 SER A 178 1 19 HELIX 10 10 SER A 178 GLY A 187 1 10 HELIX 11 11 ASN A 192 THR A 212 1 21 HELIX 12 12 SER B 18 ALA B 38 1 21 HELIX 13 13 LYS B 39 GLY B 48 1 10 HELIX 14 14 SER B 50 GLY B 59 1 10 HELIX 15 15 ASP B 60 ARG B 77 1 18 HELIX 16 16 VAL B 89 HIS B 108 1 20 HELIX 17 17 HIS B 108 HIS B 121 1 14 HELIX 18 18 GLN B 135 ALA B 152 1 18 HELIX 19 19 SER B 160 SER B 178 1 19 HELIX 20 20 SER B 178 GLY B 187 1 10 HELIX 21 21 ASN B 192 THR B 212 1 21 LINK C GLY A 48 N MSE A 49 1555 1555 1.36 LINK C MSE A 49 N SER A 50 1555 1555 1.34 LINK C ARG A 52 N MSE A 53 1555 1555 1.35 LINK C MSE A 53 N ILE A 54 1555 1555 1.36 LINK C GLU A 82 N MSE A 83 1555 1555 1.36 LINK C MSE A 83 N TYR A 84 1555 1555 1.35 LINK C ARG A 113 N MSE A 114 1555 1555 1.35 LINK C MSE A 114 N LEU A 115 1555 1555 1.35 LINK C GLN A 116 N MSE A 117 1555 1555 1.36 LINK C MSE A 117 N GLU A 118 1555 1555 1.35 LINK C LEU A 146 N MSE A 147 1555 1555 1.34 LINK C MSE A 147 N LEU A 148 1555 1555 1.35 LINK C ASP A 189 N MSE A 190 1555 1555 1.35 LINK C MSE A 190 N MSE A 191 1555 1555 1.35 LINK C MSE A 191 N ASN A 192 1555 1555 1.36 LINK C GLY A 198 N MSE A 199 1555 1555 1.36 LINK C MSE A 199 N ARG A 200 1555 1555 1.36 LINK C ARG A 201 N MSE A 202 1555 1555 1.35 LINK C MSE A 202 N ALA A 203 1555 1555 1.36 LINK C GLY B 48 N MSE B 49 1555 1555 1.35 LINK C MSE B 49 N SER B 50 1555 1555 1.34 LINK C ARG B 52 N MSE B 53 1555 1555 1.35 LINK C MSE B 53 N ILE B 54 1555 1555 1.36 LINK C GLU B 82 N MSE B 83 1555 1555 1.34 LINK C MSE B 83 N TYR B 84 1555 1555 1.35 LINK C ARG B 113 N MSE B 114 1555 1555 1.35 LINK C MSE B 114 N LEU B 115 1555 1555 1.35 LINK C GLN B 116 N MSE B 117 1555 1555 1.36 LINK C MSE B 117 N GLU B 118 1555 1555 1.35 LINK C LEU B 146 N MSE B 147 1555 1555 1.34 LINK C MSE B 147 N LEU B 148 1555 1555 1.35 LINK C ASP B 189 N MSE B 190 1555 1555 1.35 LINK C MSE B 190 N MSE B 191 1555 1555 1.35 LINK C MSE B 191 N ASN B 192 1555 1555 1.35 LINK C GLY B 198 N MSE B 199 1555 1555 1.36 LINK C MSE B 199 N ARG B 200 1555 1555 1.36 LINK C ARG B 201 N MSE B 202 1555 1555 1.35 LINK C MSE B 202 N ALA B 203 1555 1555 1.36 SITE 1 AC1 3 ARG B 74 ARG B 104 HIS B 108 SITE 1 AC2 6 HIS A 122 LYS A 125 VAL A 126 ALA A 127 SITE 2 AC2 6 GLU A 128 SER B 180 SITE 1 AC3 4 ALA B 38 LYS B 39 LEU B 40 LYS B 61 SITE 1 AC4 4 SER A 180 HIS B 122 LYS B 125 ALA B 127 SITE 1 AC5 4 ALA A 38 LYS A 39 LEU A 40 LYS A 61 SITE 1 AC6 3 ARG B 95 ARG B 200 ARG B 201 SITE 1 AC7 3 ARG A 74 ARG A 104 HIS A 108 SITE 1 AC8 2 ARG A 200 ARG A 201 CRYST1 137.238 137.238 54.725 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007287 0.004207 0.000000 0.00000 SCALE2 0.000000 0.008414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018273 0.00000