HEADER LYASE 29-JUN-10 3NPV TITLE OPTIMIZATION OF THE IN SILICO DESIGNED KEMP ELIMINASE KE70 BY TITLE 2 COMPUTATIONAL DESIGN AND DIRECTED EVOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBOSE PHOSPHATE ALDOLASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM, STRUCTURAL GENOMICS, ISRAEL STRUCTURAL PROTEOMICS CENTER, ISPC, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.KHERSONSKY,D.ROTHLISBERGE,A.M.WOLLACOTT,O.DYM,D.BAKER,D.S.TAWFIK, AUTHOR 2 ISRAEL STRUCTURAL PROTEOMICS CENTER (ISPC) REVDAT 3 01-NOV-23 3NPV 1 REMARK REVDAT 2 19-MAR-14 3NPV 1 JRNL VERSN REVDAT 1 09-FEB-11 3NPV 0 JRNL AUTH O.KHERSONSKY,D.ROTHLISBERGER,A.M.WOLLACOTT,P.MURPHY,O.DYM, JRNL AUTH 2 S.ALBECK,G.KISS,K.N.HOUK,D.BAKER,D.S.TAWFIK JRNL TITL OPTIMIZATION OF THE IN-SILICO-DESIGNED KEMP ELIMINASE KE70 JRNL TITL 2 BY COMPUTATIONAL DESIGN AND DIRECTED EVOLUTION JRNL REF J.MOL.BIOL. V. 407 391 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21277311 JRNL DOI 10.1016/J.JMB.2011.01.041 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 78893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4150 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.48 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.52 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5673 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 277 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3683 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -0.38000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.47000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.635 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3800 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5162 ; 2.021 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 6.027 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;29.827 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 637 ;12.039 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;16.494 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 612 ; 0.322 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2823 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2484 ; 2.726 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3971 ; 3.923 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1316 ; 6.303 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1189 ; 9.449 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3800 ; 3.011 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84151 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : 0.09600 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : 0.31500 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NANITRAT, 0.1M BIS TRIS-PROPANE, REMARK 280 20% PEG 3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.75900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 2 REMARK 465 THR B 3 REMARK 465 ASN B 22 REMARK 465 ASP B 23 REMARK 465 ASP B 24 REMARK 465 ASP B 253 REMARK 465 GLY B 254 REMARK 465 LYS B 255 REMARK 465 SER B 256 REMARK 465 ALA B 257 REMARK 465 SER B 258 REMARK 465 SER B 259 REMARK 465 TYR B 260 REMARK 465 GLY B 261 REMARK 465 SER B 262 REMARK 465 LEU B 263 REMARK 465 GLU B 264 REMARK 465 MET A 2 REMARK 465 THR A 3 REMARK 465 ASP A 253 REMARK 465 GLY A 254 REMARK 465 LYS A 255 REMARK 465 SER A 256 REMARK 465 ALA A 257 REMARK 465 SER A 258 REMARK 465 SER A 259 REMARK 465 TYR A 260 REMARK 465 GLY A 261 REMARK 465 SER A 262 REMARK 465 LEU A 263 REMARK 465 GLU A 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 29 CE NZ REMARK 470 LYS B 124 NZ REMARK 470 ARG B 208 CZ NH1 NH2 REMARK 470 LYS A 14 CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 LYS A 215 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 148 O HOH B 351 1.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 181 CG GLU B 181 CD 0.094 REMARK 500 GLU B 181 CD GLU B 181 OE2 -0.107 REMARK 500 LYS B 215 CD LYS B 215 CE 0.156 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 109 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 MET B 112 CG - SD - CE ANGL. DEV. = -10.8 DEGREES REMARK 500 ASP B 148 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 GLU B 181 OE1 - CD - OE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG A 109 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 208 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU B 142 65.99 63.45 REMARK 500 LYS B 147 -50.97 66.89 REMARK 500 SER B 239 -82.65 -129.95 REMARK 500 ALA A 21 71.89 -152.30 REMARK 500 GLU A 142 61.02 65.94 REMARK 500 LYS A 147 -51.40 75.30 REMARK 500 ARG A 232 24.86 -153.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NPU RELATED DB: PDB REMARK 900 RELATED ID: 3NPW RELATED DB: PDB REMARK 900 RELATED ID: 3NPX RELATED DB: PDB REMARK 900 RELATED ID: 3NQ2 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ8 RELATED DB: PDB REMARK 900 RELATED ID: 3NQV RELATED DB: PDB REMARK 900 RELATED ID: 3NR0 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. DBREF 3NPV B 2 264 PDB 3NPV 3NPV 2 264 DBREF 3NPV A 2 264 PDB 3NPV 3NPV 2 264 SEQRES 1 B 263 MET THR ASP LEU LYS ALA SER SER LEU ARG ALA LEU LYS SEQRES 2 B 263 LEU MET HIS LEU ALA THR ALA ASN ASP ASP ASP THR ASP SEQRES 3 B 263 GLU LYS VAL ILE ALA LEU CYS HIS GLN ALA LYS THR PRO SEQRES 4 B 263 VAL GLY THR THR ASP ALA ILE TYR ILE TYR PRO ARG PHE SEQRES 5 B 263 ILE PRO ILE ALA ARG LYS THR LEU LYS GLU GLN GLY THR SEQRES 6 B 263 PRO GLU ILE ARG ILE TRP THR SER THR ASN PHE PRO HIS SEQRES 7 B 263 GLY ASN ASP ASP ILE ASP ILE ALA LEU ALA GLU THR ARG SEQRES 8 B 263 ALA ALA ILE ALA TYR GLY ALA ASP GLY VAL ALA VAL VAL SEQRES 9 B 263 PHE PRO TYR ARG ALA LEU MET ALA GLY ASN GLU GLN VAL SEQRES 10 B 263 GLY PHE ASP LEU VAL LYS ALA CYS LYS GLU ALA CYS ALA SEQRES 11 B 263 ALA ALA ASN VAL LEU LEU SER VAL ILE ILE GLU THR GLY SEQRES 12 B 263 GLU LEU LYS ASP GLU ALA LEU ILE ARG LYS ALA SER GLU SEQRES 13 B 263 ILE SER ILE LYS ALA GLY ALA ASP HIS ILE VAL THR SER SEQRES 14 B 263 THR GLY LYS VAL ALA VAL GLY ALA THR PRO GLU SER ALA SEQRES 15 B 263 ARG ILE MET MET GLU VAL ILE ARG ASP MET GLY VAL GLU SEQRES 16 B 263 LYS THR VAL GLY PHE ILE PRO ALA GLY GLY VAL ARG THR SEQRES 17 B 263 ALA GLU ASP ALA GLN LYS TYR LEU ALA ILE ALA ASP GLU SEQRES 18 B 263 LEU PHE GLY ALA ASP TRP ALA ASP ALA ARG HIS TYR ALA SEQRES 19 B 263 PHE GLY ALA SER SER LEU LEU ALA SER LEU LEU LYS ALA SEQRES 20 B 263 LEU GLY HIS GLY ASP GLY LYS SER ALA SER SER TYR GLY SEQRES 21 B 263 SER LEU GLU SEQRES 1 A 263 MET THR ASP LEU LYS ALA SER SER LEU ARG ALA LEU LYS SEQRES 2 A 263 LEU MET HIS LEU ALA THR ALA ASN ASP ASP ASP THR ASP SEQRES 3 A 263 GLU LYS VAL ILE ALA LEU CYS HIS GLN ALA LYS THR PRO SEQRES 4 A 263 VAL GLY THR THR ASP ALA ILE TYR ILE TYR PRO ARG PHE SEQRES 5 A 263 ILE PRO ILE ALA ARG LYS THR LEU LYS GLU GLN GLY THR SEQRES 6 A 263 PRO GLU ILE ARG ILE TRP THR SER THR ASN PHE PRO HIS SEQRES 7 A 263 GLY ASN ASP ASP ILE ASP ILE ALA LEU ALA GLU THR ARG SEQRES 8 A 263 ALA ALA ILE ALA TYR GLY ALA ASP GLY VAL ALA VAL VAL SEQRES 9 A 263 PHE PRO TYR ARG ALA LEU MET ALA GLY ASN GLU GLN VAL SEQRES 10 A 263 GLY PHE ASP LEU VAL LYS ALA CYS LYS GLU ALA CYS ALA SEQRES 11 A 263 ALA ALA ASN VAL LEU LEU SER VAL ILE ILE GLU THR GLY SEQRES 12 A 263 GLU LEU LYS ASP GLU ALA LEU ILE ARG LYS ALA SER GLU SEQRES 13 A 263 ILE SER ILE LYS ALA GLY ALA ASP HIS ILE VAL THR SER SEQRES 14 A 263 THR GLY LYS VAL ALA VAL GLY ALA THR PRO GLU SER ALA SEQRES 15 A 263 ARG ILE MET MET GLU VAL ILE ARG ASP MET GLY VAL GLU SEQRES 16 A 263 LYS THR VAL GLY PHE ILE PRO ALA GLY GLY VAL ARG THR SEQRES 17 A 263 ALA GLU ASP ALA GLN LYS TYR LEU ALA ILE ALA ASP GLU SEQRES 18 A 263 LEU PHE GLY ALA ASP TRP ALA ASP ALA ARG HIS TYR ALA SEQRES 19 A 263 PHE GLY ALA SER SER LEU LEU ALA SER LEU LEU LYS ALA SEQRES 20 A 263 LEU GLY HIS GLY ASP GLY LYS SER ALA SER SER TYR GLY SEQRES 21 A 263 SER LEU GLU FORMUL 3 HOH *263(H2 O) HELIX 1 1 ASP B 4 LEU B 15 1 12 HELIX 2 2 THR B 26 ALA B 37 1 12 HELIX 3 3 TYR B 50 ARG B 52 5 3 HELIX 4 4 PHE B 53 GLN B 64 1 12 HELIX 5 5 ASP B 83 GLY B 98 1 16 HELIX 6 6 PRO B 107 GLY B 114 1 8 HELIX 7 7 ASN B 115 ALA B 133 1 19 HELIX 8 8 GLU B 142 LYS B 147 1 6 HELIX 9 9 ASP B 148 ALA B 162 1 15 HELIX 10 10 THR B 179 GLY B 194 1 16 HELIX 11 11 THR B 209 GLY B 225 1 17 HELIX 12 12 SER B 240 LEU B 249 1 10 HELIX 13 13 ASP A 4 LEU A 15 1 12 HELIX 14 14 THR A 26 ALA A 37 1 12 HELIX 15 15 TYR A 50 ARG A 52 5 3 HELIX 16 16 PHE A 53 GLN A 64 1 12 HELIX 17 17 ASP A 83 GLY A 98 1 16 HELIX 18 18 PRO A 107 ALA A 113 1 7 HELIX 19 19 GLU A 116 ALA A 133 1 18 HELIX 20 20 GLU A 142 LYS A 147 1 6 HELIX 21 21 ASP A 148 ALA A 162 1 15 HELIX 22 22 THR A 179 GLY A 194 1 16 HELIX 23 23 THR A 209 GLY A 225 1 17 HELIX 24 24 GLY A 225 HIS A 233 1 9 HELIX 25 25 ALA A 238 LEU A 249 1 12 SHEET 1 A 8 GLY B 200 ILE B 202 0 SHEET 2 A 8 HIS B 166 VAL B 168 1 N ILE B 167 O GLY B 200 SHEET 3 A 8 LEU B 136 ILE B 140 1 N VAL B 139 O VAL B 168 SHEET 4 A 8 GLY B 101 VAL B 105 1 N VAL B 102 O SER B 138 SHEET 5 A 8 ARG B 70 THR B 75 1 N THR B 73 O ALA B 103 SHEET 6 A 8 ALA B 46 TYR B 48 1 N ILE B 47 O TRP B 72 SHEET 7 A 8 MET B 16 LEU B 18 1 N LEU B 18 O ALA B 46 SHEET 8 A 8 PHE B 236 ALA B 238 1 O PHE B 236 N HIS B 17 SHEET 1 B 2 LYS B 38 THR B 39 0 SHEET 2 B 2 GLY B 42 THR B 43 -1 O GLY B 42 N THR B 39 SHEET 1 C 8 GLY A 200 ILE A 202 0 SHEET 2 C 8 HIS A 166 VAL A 168 1 N ILE A 167 O GLY A 200 SHEET 3 C 8 LEU A 136 ILE A 140 1 N VAL A 139 O VAL A 168 SHEET 4 C 8 GLY A 101 VAL A 105 1 N VAL A 102 O SER A 138 SHEET 5 C 8 ARG A 70 THR A 75 1 N THR A 73 O ALA A 103 SHEET 6 C 8 ALA A 46 TYR A 48 1 N ILE A 47 O TRP A 72 SHEET 7 C 8 MET A 16 ALA A 19 1 N LEU A 18 O ALA A 46 SHEET 8 C 8 ALA A 235 GLY A 237 1 O GLY A 237 N ALA A 19 SHEET 1 D 2 LYS A 38 THR A 39 0 SHEET 2 D 2 GLY A 42 THR A 43 -1 O GLY A 42 N THR A 39 CISPEP 1 PHE B 77 PRO B 78 0 -3.07 CISPEP 2 PHE A 77 PRO A 78 0 0.52 CRYST1 62.595 53.518 81.702 90.00 110.34 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015976 0.000000 0.005922 0.00000 SCALE2 0.000000 0.018685 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013054 0.00000