HEADER HYDROLASE 29-JUN-10 3NQH TITLE CRYSTAL STRUCTURE OF A GLYCOSYL HYDROLASE (BT_2959) FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 AT 2.11 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCOSYL HYDROLASE FAMILY 43 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_2959; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3NQH 1 REMARK SEQADV REVDAT 3 17-JUL-19 3NQH 1 REMARK LINK REVDAT 2 25-OCT-17 3NQH 1 REMARK REVDAT 1 28-JUL-10 3NQH 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A GLYCOSYL HYDROLASE (BT_2959) FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.11 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 31147 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1564 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2153 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3460 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3444 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 239 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.65000 REMARK 3 B22 (A**2) : 1.65000 REMARK 3 B33 (A**2) : -3.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.054 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3632 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2476 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4940 ; 1.523 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6027 ; 0.848 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 458 ; 3.690 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;29.437 ;23.774 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;10.865 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.915 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4086 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 768 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2220 ; 1.299 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 907 ; 0.289 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3595 ; 2.293 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1412 ; 3.921 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1338 ; 5.238 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0910 19.5570 49.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.1008 REMARK 3 T33: 0.0171 T12: 0.0283 REMARK 3 T13: -0.0073 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.2221 L22: 0.9290 REMARK 3 L33: 4.2648 L12: -0.1311 REMARK 3 L13: 0.2449 L23: -0.5585 REMARK 3 S TENSOR REMARK 3 S11: -0.0977 S12: -0.0460 S13: -0.0178 REMARK 3 S21: 0.0876 S22: 0.1094 S23: -0.0512 REMARK 3 S31: -0.2620 S32: 0.0018 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 460 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8910 18.9120 27.3540 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.1832 REMARK 3 T33: 0.0464 T12: -0.0816 REMARK 3 T13: 0.0298 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.7800 L22: 1.0327 REMARK 3 L33: 5.0177 L12: -0.1371 REMARK 3 L13: -0.1938 L23: 0.6518 REMARK 3 S TENSOR REMARK 3 S11: -0.1417 S12: 0.2575 S13: -0.0312 REMARK 3 S21: -0.1301 S22: 0.1111 S23: -0.1971 REMARK 3 S31: -0.1194 S32: 0.3007 S33: 0.0305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS REMARK 3 ASSIGNMENT. 5. GLYCEROL (GOL) AND ACETATE (ACT) FROM THE REMARK 3 CRYOPROTECTION AND CRYSTALLIZATION CONDITIONS HAVE BEEN MODELED REMARK 3 IN THE STRUCTURE. 6. THE SIDECHAIN OF ASN A128 IS NEAR THE REMARK 3 INTERFACE BETWEEN SYMMETRY-RELATED MOLECULES AND COULD NOT BE REMARK 3 RELIABLY MODELED. REMARK 4 REMARK 4 3NQH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060152. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97852,0.97802 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31222 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 29.801 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : 0.11900 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.92300 REMARK 200 R SYM FOR SHELL (I) : 0.92300 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15.0000% GLYCEROL, 0.1700M NH4OAC, REMARK 280 25.5000% PEG-4000, 0.1M CITRATE PH 5.6, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.46150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.46150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 125.15250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.46150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.46150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.71750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.46150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.46150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 125.15250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.46150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.46150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.71750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 83.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY SUPPORTS THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 83.43500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 ARG A 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 22 CD CE NZ REMARK 470 ASN A 128 CG OD1 ND2 REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 147 CE NZ REMARK 470 LYS A 188 CD CE NZ REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 LYS A 322 CE NZ REMARK 470 ARG A 328 CZ NH1 NH2 REMARK 470 GLU A 350 CG CD OE1 OE2 REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 GLU A 421 CG CD OE1 OE2 REMARK 470 LYS A 442 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 81 -46.16 -131.98 REMARK 500 GLU A 86 -65.85 -92.15 REMARK 500 ARG A 87 172.06 179.83 REMARK 500 TRP A 162 -108.47 -101.95 REMARK 500 GLU A 207 -164.39 -128.34 REMARK 500 SER A 208 63.81 33.62 REMARK 500 SER A 227 -140.67 53.57 REMARK 500 LYS A 342 85.11 57.00 REMARK 500 LYS A 342 85.04 56.86 REMARK 500 THR A 367 31.20 -98.37 REMARK 500 ALA A 411 -174.87 -173.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396210 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH AN N-TERMINAL REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22-460 OF REMARK 999 THE TARGET SEQUENCE. DBREF 3NQH A 21 460 UNP Q8A3J5 Q8A3J5_BACTN 21 460 SEQADV 3NQH GLY A 20 UNP Q8A3J5 EXPRESSION TAG SEQRES 1 A 441 GLY ARG LYS THR GLU LYS VAL VAL ASN ASN GLY ILE PRO SEQRES 2 A 441 TRP PHE ASP ASP ARG GLY GLU ILE VAL ASN ALA HIS GLY SEQRES 3 A 441 ALA CYS ILE VAL GLU GLU ASN GLY ARG TYR TYR LEU PHE SEQRES 4 A 441 GLY GLU TYR LYS SER ASP LYS SER ASN ALA PHE PRO GLY SEQRES 5 A 441 PHE SER CYS TYR SER SER ASP ASP LEU VAL ASN TRP LYS SEQRES 6 A 441 PHE GLU ARG VAL VAL LEU PRO MSE GLN SER SER GLY ILE SEQRES 7 A 441 LEU GLY PRO ASP ARG VAL GLY GLU ARG VAL LYS VAL MSE SEQRES 8 A 441 LYS CYS PRO SER THR GLY GLU TYR VAL MSE TYR MSE HIS SEQRES 9 A 441 ALA ASP ASP MSE ASN TYR LYS ASP PRO HIS ILE GLY TYR SEQRES 10 A 441 ALA THR CYS SER THR ILE ALA GLY GLU TYR LYS LEU HIS SEQRES 11 A 441 GLY PRO LEU LEU TYR GLU GLY LYS PRO ILE ARG ARG TRP SEQRES 12 A 441 ASP MSE GLY THR TYR GLN ASP THR ASP GLY THR GLY TYR SEQRES 13 A 441 LEU LEU LEU HIS GLY GLY ILE VAL TYR ARG LEU SER LYS SEQRES 14 A 441 ASP TYR ARG THR ALA GLU GLU LYS VAL VAL SER GLY VAL SEQRES 15 A 441 GLY GLY SER HIS GLY GLU SER PRO ALA MSE PHE LYS LYS SEQRES 16 A 441 ASP GLY THR TYR PHE PHE LEU PHE SER ASN LEU THR SER SEQRES 17 A 441 TRP GLU LYS ASN ASP ASN PHE TYR PHE THR ALA PRO SER SEQRES 18 A 441 VAL LYS GLY PRO TRP THR ARG GLN GLY LEU PHE ALA PRO SEQRES 19 A 441 GLU GLY SER LEU THR TYR ASN SER GLN THR THR PHE VAL SEQRES 20 A 441 PHE PRO LEU LYS CYS GLY GLU ASP THR ILE PRO MSE PHE SEQRES 21 A 441 MSE GLY ASP ARG TRP SER TYR PRO HIS GLN ALA SER ALA SEQRES 22 A 441 ALA THR TYR VAL TRP MSE PRO MSE GLN VAL ASP GLY THR SEQRES 23 A 441 LYS LEU SER ILE PRO GLU TYR TRP PRO SER TRP ASP VAL SEQRES 24 A 441 ASP LYS LEU LYS PRO VAL ASN PRO LEU ARG LYS GLY LYS SEQRES 25 A 441 THR VAL ASP LEU LYS LYS ILE THR PHE SER LYS GLU ALA SEQRES 26 A 441 ASP TRP LYS VAL GLU GLU GLY ARG ILE SER SER ASN VAL SEQRES 27 A 441 LYS GLY SER THR LEU SER ILE PRO PHE THR GLY SER CYS SEQRES 28 A 441 VAL ALA VAL MSE GLY GLU THR ASN CYS HIS SER GLY TYR SEQRES 29 A 441 ALA ARG MSE ASN ILE LEU ASP LYS LYS GLY GLU LYS ILE SEQRES 30 A 441 TYR SER SER LEU VAL ASP PHE TYR SER LYS ALA ASN ASP SEQRES 31 A 441 HIS ALA THR ARG PHE LYS THR PRO GLN LEU ALA GLU GLY SEQRES 32 A 441 GLU TYR THR LEU VAL ILE GLU VAL THR GLY ILE SER PRO SEQRES 33 A 441 THR TRP THR ASP LYS THR LYS ARG ILE TYR GLY SER ASP SEQRES 34 A 441 ASP CYS PHE VAL THR ILE THR ASP ILE VAL LYS LEU MODRES 3NQH MSE A 92 MET SELENOMETHIONINE MODRES 3NQH MSE A 110 MET SELENOMETHIONINE MODRES 3NQH MSE A 120 MET SELENOMETHIONINE MODRES 3NQH MSE A 122 MET SELENOMETHIONINE MODRES 3NQH MSE A 127 MET SELENOMETHIONINE MODRES 3NQH MSE A 164 MET SELENOMETHIONINE MODRES 3NQH MSE A 211 MET SELENOMETHIONINE MODRES 3NQH MSE A 278 MET SELENOMETHIONINE MODRES 3NQH MSE A 280 MET SELENOMETHIONINE MODRES 3NQH MSE A 298 MET SELENOMETHIONINE MODRES 3NQH MSE A 300 MET SELENOMETHIONINE MODRES 3NQH MSE A 374 MET SELENOMETHIONINE MODRES 3NQH MSE A 386 MET SELENOMETHIONINE HET MSE A 92 8 HET MSE A 110 8 HET MSE A 120 8 HET MSE A 122 8 HET MSE A 127 8 HET MSE A 164 8 HET MSE A 211 8 HET MSE A 278 8 HET MSE A 280 8 HET MSE A 298 8 HET MSE A 300 8 HET MSE A 374 8 HET MSE A 386 8 HET GOL A 501 6 HET GOL A 502 6 HET ACT A 503 4 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *239(H2 O) HELIX 1 1 SER A 256 SER A 261 1 6 HELIX 2 2 HIS A 288 ALA A 293 1 6 HELIX 3 3 ASN A 325 GLY A 330 5 6 HELIX 4 4 ASP A 334 ILE A 338 5 5 HELIX 5 5 LYS A 342 TRP A 346 5 5 SHEET 1 A 3 VAL A 26 ASN A 28 0 SHEET 2 A 3 SER A 315 ASP A 317 -1 O TRP A 316 N VAL A 27 SHEET 3 A 3 LYS A 322 PRO A 323 -1 O LYS A 322 N ASP A 317 SHEET 1 B 4 HIS A 44 GLU A 51 0 SHEET 2 B 4 ARG A 54 GLU A 60 -1 O GLU A 60 N HIS A 44 SHEET 3 B 4 PHE A 72 SER A 77 -1 O SER A 77 N TYR A 55 SHEET 4 B 4 LYS A 84 LEU A 90 -1 O LYS A 84 N SER A 76 SHEET 1 C 4 ARG A 102 LYS A 111 0 SHEET 2 C 4 TYR A 118 ASP A 126 -1 O HIS A 123 N GLU A 105 SHEET 3 C 4 HIS A 133 CYS A 139 -1 O HIS A 133 N ALA A 124 SHEET 4 C 4 LYS A 147 PRO A 151 -1 O HIS A 149 N TYR A 136 SHEET 1 D 2 LEU A 153 TYR A 154 0 SHEET 2 D 2 LYS A 157 PRO A 158 -1 O LYS A 157 N TYR A 154 SHEET 1 E 4 MSE A 164 GLN A 168 0 SHEET 2 E 4 GLY A 174 LEU A 178 -1 O LEU A 177 N GLY A 165 SHEET 3 E 4 ILE A 182 LEU A 186 -1 O LEU A 186 N GLY A 174 SHEET 4 E 4 ALA A 193 VAL A 198 -1 O GLU A 195 N ARG A 185 SHEET 1 F 4 GLU A 207 LYS A 214 0 SHEET 2 F 4 THR A 217 SER A 223 -1 O PHE A 219 N PHE A 212 SHEET 3 F 4 PHE A 234 ALA A 238 -1 O ALA A 238 N TYR A 218 SHEET 4 F 4 THR A 246 LEU A 250 -1 O THR A 246 N THR A 237 SHEET 1 G 3 GLN A 262 CYS A 271 0 SHEET 2 G 3 ASP A 274 ARG A 283 -1 O ILE A 276 N LEU A 269 SHEET 3 G 3 THR A 294 PRO A 299 -1 O MSE A 298 N PHE A 279 SHEET 1 H 2 GLN A 301 ASP A 303 0 SHEET 2 H 2 LYS A 306 SER A 308 -1 O SER A 308 N GLN A 301 SHEET 1 I 4 LYS A 331 THR A 332 0 SHEET 2 I 4 VAL A 452 LYS A 459 -1 O LYS A 459 N LYS A 331 SHEET 3 I 4 ARG A 352 SER A 355 -1 N ILE A 353 O ILE A 454 SHEET 4 I 4 LYS A 347 GLU A 349 -1 N LYS A 347 O SER A 354 SHEET 1 J 4 LYS A 331 THR A 332 0 SHEET 2 J 4 VAL A 452 LYS A 459 -1 O LYS A 459 N LYS A 331 SHEET 3 J 4 VAL A 371 THR A 377 -1 N MSE A 374 O ASP A 456 SHEET 4 J 4 ASP A 409 LYS A 415 -1 O ARG A 413 N VAL A 373 SHEET 1 K 5 THR A 339 PHE A 340 0 SHEET 2 K 5 THR A 361 PHE A 366 -1 O SER A 363 N THR A 339 SHEET 3 K 5 TYR A 424 VAL A 430 -1 O LEU A 426 N ILE A 364 SHEET 4 K 5 TYR A 383 LEU A 389 -1 N ASN A 387 O VAL A 427 SHEET 5 K 5 LYS A 395 ASP A 402 -1 O VAL A 401 N ALA A 384 SHEET 1 L 2 THR A 436 THR A 438 0 SHEET 2 L 2 ILE A 444 GLY A 446 -1 O TYR A 445 N TRP A 437 LINK C PRO A 91 N MSE A 92 1555 1555 1.33 LINK C MSE A 92 N GLN A 93 1555 1555 1.33 LINK C VAL A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N LYS A 111 1555 1555 1.33 LINK C VAL A 119 N MSE A 120 1555 1555 1.32 LINK C MSE A 120 N TYR A 121 1555 1555 1.33 LINK C TYR A 121 N MSE A 122 1555 1555 1.34 LINK C MSE A 122 N HIS A 123 1555 1555 1.33 LINK C ASP A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N ASN A 128 1555 1555 1.32 LINK C ASP A 163 N MSE A 164 1555 1555 1.32 LINK C MSE A 164 N GLY A 165 1555 1555 1.33 LINK C ALA A 210 N MSE A 211 1555 1555 1.33 LINK C MSE A 211 N PHE A 212 1555 1555 1.33 LINK C PRO A 277 N MSE A 278 1555 1555 1.34 LINK C MSE A 278 N PHE A 279 1555 1555 1.32 LINK C PHE A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N GLY A 281 1555 1555 1.33 LINK C TRP A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N PRO A 299 1555 1555 1.34 LINK C PRO A 299 N MSE A 300 1555 1555 1.33 LINK C MSE A 300 N GLN A 301 1555 1555 1.33 LINK C VAL A 373 N MSE A 374 1555 1555 1.33 LINK C MSE A 374 N GLY A 375 1555 1555 1.33 LINK C ARG A 385 N MSE A 386 1555 1555 1.33 LINK C MSE A 386 N ASN A 387 1555 1555 1.34 CISPEP 1 GLY A 243 PRO A 244 0 -3.93 CISPEP 2 TYR A 286 PRO A 287 0 2.18 SITE 1 AC1 10 GLU A 105 ARG A 106 TYR A 129 ASP A 163 SITE 2 AC1 10 GLU A 207 GLN A 262 HOH A 512 HOH A 588 SITE 3 AC1 10 HOH A 670 HOH A 701 SITE 1 AC2 3 GLN A 93 SER A 94 LYS A 358 SITE 1 AC3 2 ASP A 439 LYS A 440 CRYST1 78.923 78.923 166.870 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012671 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005993 0.00000