HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-10 3NQN TITLE CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION. (DR_2006) FROM TITLE 2 DEINOCOCCUS RADIODURANS AT 1.88 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 GENE: DR_2006; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PROTEIN WITH UNKNOWN FUNCTION, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3NQN 1 REMARK SEQADV LINK REVDAT 3 17-JUL-19 3NQN 1 REMARK LINK REVDAT 2 25-OCT-17 3NQN 1 REMARK REVDAT 1 18-AUG-10 3NQN 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION. JRNL TITL 2 (DR_2006) FROM DEINOCOCCUS RADIODURANS AT 1.88 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 26914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1350 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1669 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2217 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.09000 REMARK 3 B22 (A**2) : 1.09000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.371 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2501 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1729 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3441 ; 1.070 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4213 ; 0.716 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 3.818 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;28.805 ;22.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;12.486 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.896 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2900 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 534 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1592 ; 1.662 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 648 ; 0.461 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2540 ; 2.717 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 909 ; 4.563 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 872 ; 6.700 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 156 6 REMARK 3 1 B 3 B 156 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1688 ; 0.470 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1688 ; 2.380 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 157 REMARK 3 ORIGIN FOR THE GROUP (A): 4.5451 14.6682 43.6087 REMARK 3 T TENSOR REMARK 3 T11: 0.0352 T22: 0.1223 REMARK 3 T33: 0.0890 T12: -0.0046 REMARK 3 T13: 0.0142 T23: 0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.5828 L22: 0.8948 REMARK 3 L33: 1.6033 L12: 0.1006 REMARK 3 L13: -0.0587 L23: 0.3040 REMARK 3 S TENSOR REMARK 3 S11: 0.0235 S12: -0.0552 S13: -0.0168 REMARK 3 S21: 0.0907 S22: -0.0340 S23: 0.0079 REMARK 3 S31: -0.0091 S32: 0.0183 S33: 0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 156 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5122 14.8182 80.0261 REMARK 3 T TENSOR REMARK 3 T11: 0.0842 T22: 0.0230 REMARK 3 T33: 0.0708 T12: 0.0117 REMARK 3 T13: 0.0056 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 0.9876 L22: 0.9528 REMARK 3 L33: 1.9166 L12: -0.1451 REMARK 3 L13: -0.1807 L23: -0.3757 REMARK 3 S TENSOR REMARK 3 S11: -0.0194 S12: 0.0576 S13: -0.0513 REMARK 3 S21: 0.0667 S22: 0.0238 S23: -0.0503 REMARK 3 S31: -0.0503 S32: -0.0025 S33: -0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. WATERS WERE EXCLUDED FROM THE ASSIGNMENT OF TLS REMARK 3 GROUPS. 5. CALCIUM (CA) FROM THE CRYSTALLIZATION AND (4R)-2- REMARK 3 METHYL-2,4-PENTANEDIOL (MRD), USED AS A CRYO- PROTECTANT WERE REMARK 3 MODELED INTO THE STRUCTURE. 6. ELECTRON DENSITIES CORRESPONDING REMARK 3 TO RESIDUES 116-119 ON THE A SUBUNIT AND RESIDUES 117-123 ON THE REMARK 3 B SUBUNIT WERE DISORDERED AND THESE REGIONS COULD NOT BE REMARK 3 RELIABLY MODELED. REMARK 4 REMARK 4 3NQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000060158. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97925,0.97883 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27005 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 28.893 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE R MERGE, AND COMPLETENETSS STATISTICS REMARK 200 REPORTED IN REMARK 200 WERE COMPUTED WITH XSCALE WITH FRIEDEL REMARK 200 PAIRS KEPT SEPARATE. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.0500M CALCIUM CHLORIDE, 15.8000% REMARK 280 POLYETHYLENE GLYCOL 3350, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.87650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.75450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.75450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 167.81475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.75450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.75450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.93825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.75450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.75450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 167.81475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.75450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.75450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 55.93825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 111.87650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: CRYSTAL PACKING ANALYSIS AND ANAYLTICAL SIZE EXCLUSION REMARK 300 CHROMATOGRAPHY SUPPORT THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIC FORM IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 ILE A 2 REMARK 465 THR A 116 REMARK 465 PRO A 117 REMARK 465 GLU A 118 REMARK 465 ALA A 119 REMARK 465 PRO B 117 REMARK 465 GLU B 118 REMARK 465 ALA B 119 REMARK 465 GLU B 120 REMARK 465 GLY B 121 REMARK 465 TRP B 122 REMARK 465 GLY B 123 REMARK 465 ALA B 157 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 100 CG CD OE1 OE2 REMARK 470 LYS A 129 CE NZ REMARK 470 GLU B 100 CD OE1 OE2 REMARK 470 THR B 116 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 57 -47.94 75.00 REMARK 500 LEU B 57 -50.03 71.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 158 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 62 OD1 REMARK 620 2 ASP A 62 OD2 51.5 REMARK 620 3 HOH A 194 O 127.6 77.1 REMARK 620 4 HOH A 214 O 78.7 70.5 95.0 REMARK 620 5 HOH A 302 O 78.6 79.0 82.6 149.1 REMARK 620 6 ASP B 62 OD1 143.3 144.2 84.4 81.1 128.9 REMARK 620 7 ASP B 62 OD2 139.6 149.1 80.5 133.0 77.2 51.9 REMARK 620 8 HOH B 190 O 78.8 130.2 151.8 100.6 95.2 75.2 71.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 159 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MSE B 1 O REMARK 620 2 SER B 4 O 80.6 REMARK 620 3 GLU B 140 OE2 172.1 105.8 REMARK 620 4 HOH B 184 O 85.0 81.8 100.2 REMARK 620 5 HOH B 202 O 78.5 69.0 99.3 148.4 REMARK 620 6 HOH B 353 O 92.9 134.1 79.4 143.2 65.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 160 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 6 O REMARK 620 2 HOH B 176 O 78.7 REMARK 620 3 HOH B 234 O 69.1 75.9 REMARK 620 4 HOH B 333 O 101.6 138.3 65.9 REMARK 620 5 HOH B 337 O 162.1 91.5 94.0 75.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 158 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 159 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 162 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 394616 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NQN A 1 157 UNP Q9RSW5 Q9RSW5_DEIRA 1 157 DBREF 3NQN B 1 157 UNP Q9RSW5 Q9RSW5_DEIRA 1 157 SEQADV 3NQN GLY A 0 UNP Q9RSW5 EXPRESSION TAG SEQADV 3NQN GLY B 0 UNP Q9RSW5 EXPRESSION TAG SEQRES 1 A 158 GLY MSE ILE LEU SER ALA GLU GLN SER PHE THR LEU ARG SEQRES 2 A 158 HIS PRO HIS GLY GLN ALA ALA ALA LEU ALA PHE VAL ARG SEQRES 3 A 158 GLU PRO ALA ALA ALA LEU ALA GLY VAL ARG PHE LEU ARG SEQRES 4 A 158 GLY LEU ASP SER ASP GLY GLU GLN VAL TRP GLY GLU LEU SEQRES 5 A 158 LEU VAL THR VAL PRO LEU LEU GLY GLU VAL ASP LEU PRO SEQRES 6 A 158 PHE ARG SER GLU ILE VAL ARG THR PRO GLN GLY ALA GLU SEQRES 7 A 158 LEU ARG PRO LEU THR LEU THR GLY GLU ARG ALA TRP VAL SEQRES 8 A 158 ALA VAL SER GLY GLN ALA THR ALA ALA GLU GLY GLY GLU SEQRES 9 A 158 MSE ALA PHE ALA PHE GLN PHE GLN ALA HIS LEU ALA THR SEQRES 10 A 158 PRO GLU ALA GLU GLY TRP GLY GLY ALA ALA PHE GLU LYS SEQRES 11 A 158 MSE VAL GLN ALA ALA ALA GLY ARG THR LEU GLU ARG VAL SEQRES 12 A 158 ALA LYS ALA LEU PRO GLU GLY LEU ALA ALA GLY LEU PRO SEQRES 13 A 158 PRO ALA SEQRES 1 B 158 GLY MSE ILE LEU SER ALA GLU GLN SER PHE THR LEU ARG SEQRES 2 B 158 HIS PRO HIS GLY GLN ALA ALA ALA LEU ALA PHE VAL ARG SEQRES 3 B 158 GLU PRO ALA ALA ALA LEU ALA GLY VAL ARG PHE LEU ARG SEQRES 4 B 158 GLY LEU ASP SER ASP GLY GLU GLN VAL TRP GLY GLU LEU SEQRES 5 B 158 LEU VAL THR VAL PRO LEU LEU GLY GLU VAL ASP LEU PRO SEQRES 6 B 158 PHE ARG SER GLU ILE VAL ARG THR PRO GLN GLY ALA GLU SEQRES 7 B 158 LEU ARG PRO LEU THR LEU THR GLY GLU ARG ALA TRP VAL SEQRES 8 B 158 ALA VAL SER GLY GLN ALA THR ALA ALA GLU GLY GLY GLU SEQRES 9 B 158 MSE ALA PHE ALA PHE GLN PHE GLN ALA HIS LEU ALA THR SEQRES 10 B 158 PRO GLU ALA GLU GLY TRP GLY GLY ALA ALA PHE GLU LYS SEQRES 11 B 158 MSE VAL GLN ALA ALA ALA GLY ARG THR LEU GLU ARG VAL SEQRES 12 B 158 ALA LYS ALA LEU PRO GLU GLY LEU ALA ALA GLY LEU PRO SEQRES 13 B 158 PRO ALA MODRES 3NQN MSE A 104 MET SELENOMETHIONINE MODRES 3NQN MSE A 130 MET SELENOMETHIONINE MODRES 3NQN MSE B 1 MET SELENOMETHIONINE MODRES 3NQN MSE B 104 MET SELENOMETHIONINE MODRES 3NQN MSE B 130 MET SELENOMETHIONINE HET MSE A 104 8 HET MSE A 130 13 HET MSE B 1 8 HET MSE B 104 8 HET MSE B 130 13 HET CA A 158 1 HET MRD A 161 8 HET MRD A 163 8 HET CA B 159 1 HET CA B 160 1 HET MRD B 162 8 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 3 CA 3(CA 2+) FORMUL 4 MRD 3(C6 H14 O2) FORMUL 9 HOH *190(H2 O) HELIX 1 1 GLY A 16 GLU A 26 1 11 HELIX 2 2 GLU A 26 LEU A 31 1 6 HELIX 3 3 GLU A 120 GLY A 153 1 34 HELIX 4 4 GLY B 16 ARG B 25 1 10 HELIX 5 5 GLU B 26 GLY B 33 1 8 HELIX 6 6 GLY B 124 ALA B 152 1 29 SHEET 1 A 7 SER A 4 ARG A 12 0 SHEET 2 A 7 GLU A 103 HIS A 113 -1 O PHE A 108 N GLN A 7 SHEET 3 A 7 TRP A 89 ALA A 98 -1 N TRP A 89 O HIS A 113 SHEET 4 A 7 GLY A 75 PRO A 80 -1 N LEU A 78 O GLY A 94 SHEET 5 A 7 GLY A 59 THR A 72 -1 N GLU A 68 O ARG A 79 SHEET 6 A 7 GLN A 46 VAL A 55 -1 N VAL A 47 O SER A 67 SHEET 7 A 7 ARG A 38 SER A 42 -1 N ASP A 41 O TRP A 48 SHEET 1 B 7 SER B 4 ARG B 12 0 SHEET 2 B 7 GLU B 103 HIS B 113 -1 O MSE B 104 N LEU B 11 SHEET 3 B 7 TRP B 89 ALA B 98 -1 N TRP B 89 O HIS B 113 SHEET 4 B 7 GLY B 75 PRO B 80 -1 N LEU B 78 O GLY B 94 SHEET 5 B 7 GLY B 59 THR B 72 -1 N GLU B 68 O ARG B 79 SHEET 6 B 7 GLN B 46 VAL B 55 -1 N VAL B 53 O VAL B 61 SHEET 7 B 7 ARG B 38 SER B 42 -1 N ARG B 38 O GLU B 50 LINK C GLU A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N ALA A 105 1555 1555 1.33 LINK C LYS A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N VAL A 131 1555 1555 1.34 LINK C GLY B 0 N MSE B 1 1555 1555 1.34 LINK C MSE B 1 N ILE B 2 1555 1555 1.34 LINK C GLU B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N ALA B 105 1555 1555 1.33 LINK C LYS B 129 N MSE B 130 1555 1555 1.33 LINK C MSE B 130 N VAL B 131 1555 1555 1.33 LINK OD1 ASP A 62 CA CA A 158 1555 1555 2.49 LINK OD2 ASP A 62 CA CA A 158 1555 1555 2.58 LINK CA CA A 158 O HOH A 194 1555 1555 2.43 LINK CA CA A 158 O HOH A 214 1555 1555 2.55 LINK CA CA A 158 O HOH A 302 1555 1555 2.31 LINK CA CA A 158 OD1 ASP B 62 1555 1555 2.37 LINK CA CA A 158 OD2 ASP B 62 1555 1555 2.64 LINK CA CA A 158 O HOH B 190 1555 1555 2.47 LINK O MSE B 1 CA CA B 159 1555 1555 2.27 LINK O SER B 4 CA CA B 159 1555 1555 2.49 LINK O GLU B 6 CA CA B 160 1555 1555 2.51 LINK OE2 GLU B 140 CA CA B 159 1555 1555 2.38 LINK CA CA B 159 O HOH B 184 1555 1555 2.44 LINK CA CA B 159 O HOH B 202 1555 1555 2.28 LINK CA CA B 159 O HOH B 353 1555 1555 2.55 LINK CA CA B 160 O HOH B 176 1555 1555 2.67 LINK CA CA B 160 O HOH B 234 1555 1555 2.53 LINK CA CA B 160 O HOH B 333 1555 1555 2.42 LINK CA CA B 160 O HOH B 337 1555 1555 2.47 SITE 1 AC1 6 ASP A 62 HOH A 194 HOH A 214 HOH A 302 SITE 2 AC1 6 ASP B 62 HOH B 190 SITE 1 AC2 3 VAL A 24 ALA A 30 GLY A 94 SITE 1 AC3 4 GLN A 95 ALA A 105 HOH A 180 HOH A 261 SITE 1 AC4 7 HOH A 264 MSE B 1 SER B 4 GLU B 140 SITE 2 AC4 7 HOH B 184 HOH B 202 HOH B 353 SITE 1 AC5 5 GLU B 6 HOH B 176 HOH B 234 HOH B 333 SITE 2 AC5 5 HOH B 337 SITE 1 AC6 7 VAL B 24 PRO B 27 LEU B 31 ALA B 76 SITE 2 AC6 7 LEU B 78 GLY B 94 GLN B 95 CRYST1 53.509 53.509 223.753 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018688 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004469 0.00000