HEADER LYASE 30-JUN-10 3NR0 TITLE OPTIMIZATION OF THE IN SILICO DESIGNED KEMP ELIMINASE KE70 BY TITLE 2 COMPUTATIONAL DESIGN AND DIRECTED EVOLUTION R6 6/10A COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYRIBOSE PHOSPHATE ALDOLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TIM, STRUCTURAL GENOMICS, ISRAEL STRUCTURAL PROTEOMICS CENTER, ISPC, KEYWDS 2 LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.KHERSONSKY,D.ROTHLISBERGE,A.M.WOLLACOTT,O.DYM,D.BAKER,D.S.TAWFIK, AUTHOR 2 ISRAEL STRUCTURAL PROTEOMICS CENTER (ISPC) REVDAT 3 01-NOV-23 3NR0 1 REMARK REVDAT 2 19-MAR-14 3NR0 1 JRNL VERSN REVDAT 1 09-FEB-11 3NR0 0 JRNL AUTH O.KHERSONSKY,D.ROTHLISBERGER,A.M.WOLLACOTT,P.MURPHY,O.DYM, JRNL AUTH 2 S.ALBECK,G.KISS,K.N.HOUK,D.BAKER,D.S.TAWFIK JRNL TITL OPTIMIZATION OF THE IN-SILICO-DESIGNED KEMP ELIMINASE KE70 JRNL TITL 2 BY COMPUTATIONAL DESIGN AND DIRECTED EVOLUTION JRNL REF J.MOL.BIOL. V. 407 391 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21277311 JRNL DOI 10.1016/J.JMB.2011.01.041 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 26268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1416 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1791 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3610 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : 2.80000 REMARK 3 B33 (A**2) : -1.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.42000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.161 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.321 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3696 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5010 ; 2.082 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ;12.609 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;31.496 ;24.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;16.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.563 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 604 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2712 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2428 ; 1.119 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3876 ; 2.009 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1268 ; 3.651 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1134 ; 5.817 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NR0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060171. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27694 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 FOR SHELL : 3.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3NPU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M NAAC, 20% PEG 6000, REMARK 280 PH 5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.60850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 19A REMARK 465 ALA A 20 REMARK 465 ASN A 21 REMARK 465 ASP A 22 REMARK 465 ASP A 23 REMARK 465 ASP A 24 REMARK 465 GLY A 252 REMARK 465 ASP A 253 REMARK 465 GLY A 254 REMARK 465 LYS A 255 REMARK 465 SER A 256 REMARK 465 ALA A 257 REMARK 465 SER A 258 REMARK 465 SER A 259 REMARK 465 TYR A 260 REMARK 465 GLY A 261 REMARK 465 SER A 262 REMARK 465 LEU A 263 REMARK 465 GLU A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS A 268 REMARK 465 HIS A 269 REMARK 465 HIS A 270 REMARK 465 MET B 1 REMARK 465 SER B 19A REMARK 465 ALA B 20 REMARK 465 ASN B 21 REMARK 465 ASP B 22 REMARK 465 ASP B 23 REMARK 465 ASP B 24 REMARK 465 GLY B 252 REMARK 465 ASP B 253 REMARK 465 GLY B 254 REMARK 465 LYS B 255 REMARK 465 SER B 256 REMARK 465 ALA B 257 REMARK 465 SER B 258 REMARK 465 SER B 259 REMARK 465 TYR B 260 REMARK 465 GLY B 261 REMARK 465 SER B 262 REMARK 465 LEU B 263 REMARK 465 GLU B 264 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 4 CG CD1 CD2 REMARK 470 LYS A 58 CE NZ REMARK 470 ARG A 91 CZ NH1 NH2 REMARK 470 LYS A 146 CE NZ REMARK 470 LYS A 153 CE NZ REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 196 CE NZ REMARK 470 ARG A 207 CZ NH1 NH2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS B 58 CD CE NZ REMARK 470 LYS B 146 CE NZ REMARK 470 LYS B 214 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 210 CG GLU A 210 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 229 N - CA - C ANGL. DEV. = -17.8 DEGREES REMARK 500 ASP B 82 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 147 CB - CG - OD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG B 152 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ASP B 229 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP B 229 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 229 N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 141 70.55 67.00 REMARK 500 LYS A 146 -64.10 75.20 REMARK 500 GLU B 141 63.89 62.73 REMARK 500 LYS B 146 -76.11 73.32 REMARK 500 ASP B 147 124.84 -37.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 2 THR A 3 145.74 REMARK 500 ALA A 18 THR A 19 119.52 REMARK 500 ALA A 228 ASP A 229 -148.55 REMARK 500 ALA B 18 THR B 19 116.66 REMARK 500 ALA B 228 ASP B 229 -146.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NPU RELATED DB: PDB REMARK 900 RELATED ID: 3NPV RELATED DB: PDB REMARK 900 RELATED ID: 3NPW RELATED DB: PDB REMARK 900 RELATED ID: 3NPX RELATED DB: PDB REMARK 900 RELATED ID: 3NQ2 RELATED DB: PDB REMARK 900 RELATED ID: 3NQ8 RELATED DB: PDB REMARK 900 RELATED ID: 3NQV RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN DOES NOT CURRENTLY REMARK 999 EXIST. THE WILD TYPE HAS BEEN DEPOSITED TO PDB, 3NPU AND 3NPV. THIS REMARK 999 SEQUENCE IS ALA 2, SER 19A, ALA 239 INSERTION AND K28N, T42N, Y47F, REMARK 999 W71C, G100S, S137A, H165N, A203V MUTANT. ALSO ASP RESIDUE BETWEEN REMARK 999 THR 3 AND LEU 4 HAS BEEN DELETION. DBREF 3NR0 A 1 270 PDB 3NR0 3NR0 1 270 DBREF 3NR0 B 1 270 PDB 3NR0 3NR0 1 270 SEQRES 1 A 271 MET ALA THR LEU LYS ALA SER SER LEU ARG ALA LEU LYS SEQRES 2 A 271 LEU MET HIS LEU ALA THR SER ALA ASN ASP ASP ASP THR SEQRES 3 A 271 ASP GLU ASN VAL ILE ALA LEU CYS HIS GLN ALA LYS THR SEQRES 4 A 271 PRO VAL GLY ASN THR ASP ALA ILE PHE ILE TYR PRO ARG SEQRES 5 A 271 PHE ILE PRO ILE ALA ARG LYS THR LEU LYS GLU GLN GLY SEQRES 6 A 271 THR PRO GLU ILE ARG ILE CYS THR SER THR ASN PHE PRO SEQRES 7 A 271 HIS GLY ASN ASP ASP ILE ASP ILE ALA LEU ALA GLU THR SEQRES 8 A 271 ARG ALA ALA ILE ALA TYR GLY ALA ASP SER VAL ALA VAL SEQRES 9 A 271 VAL PHE PRO TYR ARG ALA LEU MET ALA GLY ASN GLU GLN SEQRES 10 A 271 VAL GLY PHE ASP LEU VAL LYS ALA CYS LYS GLU ALA CYS SEQRES 11 A 271 ALA ALA ALA ASN VAL LEU LEU ALA VAL ILE ILE GLU THR SEQRES 12 A 271 GLY GLU LEU LYS ASP GLU ALA LEU ILE ARG LYS ALA SER SEQRES 13 A 271 GLU ILE SER ILE LYS ALA GLY ALA ASP ASN ILE VAL THR SEQRES 14 A 271 SER THR GLY LYS VAL ALA VAL GLY ALA THR PRO GLU SER SEQRES 15 A 271 ALA ARG ILE MET MET GLU VAL ILE ARG ASP MET GLY VAL SEQRES 16 A 271 GLU LYS THR VAL GLY PHE ILE PRO VAL GLY GLY VAL ARG SEQRES 17 A 271 THR ALA GLU ASP ALA GLN LYS TYR LEU ALA ILE ALA ASP SEQRES 18 A 271 GLU LEU PHE GLY ALA ASP TRP ALA ASP ALA ARG HIS TYR SEQRES 19 A 271 ALA PHE GLY ALA SER ALA SER LEU LEU ALA SER LEU LEU SEQRES 20 A 271 LYS ALA LEU GLY HIS GLY ASP GLY LYS SER ALA SER SER SEQRES 21 A 271 TYR GLY SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 271 MET ALA THR LEU LYS ALA SER SER LEU ARG ALA LEU LYS SEQRES 2 B 271 LEU MET HIS LEU ALA THR SER ALA ASN ASP ASP ASP THR SEQRES 3 B 271 ASP GLU ASN VAL ILE ALA LEU CYS HIS GLN ALA LYS THR SEQRES 4 B 271 PRO VAL GLY ASN THR ASP ALA ILE PHE ILE TYR PRO ARG SEQRES 5 B 271 PHE ILE PRO ILE ALA ARG LYS THR LEU LYS GLU GLN GLY SEQRES 6 B 271 THR PRO GLU ILE ARG ILE CYS THR SER THR ASN PHE PRO SEQRES 7 B 271 HIS GLY ASN ASP ASP ILE ASP ILE ALA LEU ALA GLU THR SEQRES 8 B 271 ARG ALA ALA ILE ALA TYR GLY ALA ASP SER VAL ALA VAL SEQRES 9 B 271 VAL PHE PRO TYR ARG ALA LEU MET ALA GLY ASN GLU GLN SEQRES 10 B 271 VAL GLY PHE ASP LEU VAL LYS ALA CYS LYS GLU ALA CYS SEQRES 11 B 271 ALA ALA ALA ASN VAL LEU LEU ALA VAL ILE ILE GLU THR SEQRES 12 B 271 GLY GLU LEU LYS ASP GLU ALA LEU ILE ARG LYS ALA SER SEQRES 13 B 271 GLU ILE SER ILE LYS ALA GLY ALA ASP ASN ILE VAL THR SEQRES 14 B 271 SER THR GLY LYS VAL ALA VAL GLY ALA THR PRO GLU SER SEQRES 15 B 271 ALA ARG ILE MET MET GLU VAL ILE ARG ASP MET GLY VAL SEQRES 16 B 271 GLU LYS THR VAL GLY PHE ILE PRO VAL GLY GLY VAL ARG SEQRES 17 B 271 THR ALA GLU ASP ALA GLN LYS TYR LEU ALA ILE ALA ASP SEQRES 18 B 271 GLU LEU PHE GLY ALA ASP TRP ALA ASP ALA ARG HIS TYR SEQRES 19 B 271 ALA PHE GLY ALA SER ALA SER LEU LEU ALA SER LEU LEU SEQRES 20 B 271 LYS ALA LEU GLY HIS GLY ASP GLY LYS SER ALA SER SER SEQRES 21 B 271 TYR GLY SER LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *66(H2 O) HELIX 1 1 THR A 3 LEU A 14 1 12 HELIX 2 2 THR A 25 ALA A 36 1 12 HELIX 3 3 TYR A 49 ARG A 51 5 3 HELIX 4 4 PHE A 52 GLN A 63 1 12 HELIX 5 5 ASP A 82 GLY A 97 1 16 HELIX 6 6 PRO A 106 ALA A 112 1 7 HELIX 7 7 ASN A 114 ALA A 132 1 19 HELIX 8 8 GLU A 141 LYS A 146 1 6 HELIX 9 9 ASP A 147 ALA A 161 1 15 HELIX 10 10 THR A 178 GLY A 193 1 16 HELIX 11 11 THR A 208 GLY A 224 1 17 HELIX 12 12 SER A 238 ALA A 248 1 11 HELIX 13 13 ALA B 2 LEU B 14 1 13 HELIX 14 14 THR B 25 LYS B 37 1 13 HELIX 15 15 TYR B 49 ARG B 51 5 3 HELIX 16 16 PHE B 52 GLN B 63 1 12 HELIX 17 17 ASP B 82 GLY B 97 1 16 HELIX 18 18 PRO B 106 ALA B 112 1 7 HELIX 19 19 ASN B 114 ALA B 132 1 19 HELIX 20 20 GLU B 141 LYS B 146 1 6 HELIX 21 21 ASP B 147 ALA B 161 1 15 HELIX 22 22 THR B 178 GLY B 193 1 16 HELIX 23 23 THR B 208 GLY B 224 1 17 HELIX 24 24 SER B 238 ALA B 248 1 11 SHEET 1 A 8 GLY A 199 ILE A 201 0 SHEET 2 A 8 ASN A 165 VAL A 167 1 N ILE A 166 O GLY A 199 SHEET 3 A 8 LEU A 135 ILE A 139 1 N VAL A 138 O VAL A 167 SHEET 4 A 8 SER A 100 VAL A 104 1 N VAL A 101 O ALA A 137 SHEET 5 A 8 ARG A 69 THR A 74 1 N THR A 72 O ALA A 102 SHEET 6 A 8 ALA A 45 PHE A 47 1 N ILE A 46 O CYS A 71 SHEET 7 A 8 MET A 15 ALA A 18 1 N LEU A 17 O ALA A 45 SHEET 8 A 8 PHE A 235 ALA A 237 1 O ALA A 237 N ALA A 18 SHEET 1 B 2 LYS A 37 THR A 38 0 SHEET 2 B 2 GLY A 41 ASN A 42 -1 O GLY A 41 N THR A 38 SHEET 1 C 8 GLY B 199 ILE B 201 0 SHEET 2 C 8 ASN B 165 VAL B 167 1 N ILE B 166 O GLY B 199 SHEET 3 C 8 LEU B 135 ILE B 139 1 N VAL B 138 O VAL B 167 SHEET 4 C 8 SER B 100 VAL B 104 1 N VAL B 103 O ALA B 137 SHEET 5 C 8 ARG B 69 THR B 74 1 N THR B 72 O ALA B 102 SHEET 6 C 8 ALA B 45 PHE B 47 1 N ILE B 46 O CYS B 71 SHEET 7 C 8 MET B 15 ALA B 18 1 N LEU B 17 O ALA B 45 SHEET 8 C 8 PHE B 235 ALA B 237 1 O ALA B 237 N ALA B 18 CISPEP 1 PHE A 76 PRO A 77 0 1.98 CISPEP 2 PHE B 76 PRO B 77 0 1.32 CRYST1 49.105 41.217 139.438 90.00 94.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020365 0.000000 0.001767 0.00000 SCALE2 0.000000 0.024262 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007199 0.00000