data_3NRI # _entry.id 3NRI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NRI pdb_00003nri 10.2210/pdb3nri/pdb RCSB RCSB060189 ? ? WWPDB D_1000060189 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_ref_seq_dif 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NRI _pdbx_database_status.recvd_initial_deposition_date 2010-06-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2ZCO . unspecified PDB 2ZCP . unspecified PDB 3NPR . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lin, F.-Y.' 1 'Liu, C.-I.' 2 'Liu, Y.-L.' 3 'Wang, K.' 4 'Zhang, Y.' 5 'Oldfield, E.' 6 # _citation.id primary _citation.title 'Mechanism of action and inhibition of dehydrosqualene synthase.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 107 _citation.page_first 21337 _citation.page_last 21342 _citation.year 2010 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21098670 _citation.pdbx_database_id_DOI 10.1073/pnas.1010907107 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, F.Y.' 1 ? primary 'Liu, C.I.' 2 ? primary 'Liu, Y.L.' 3 ? primary 'Zhang, Y.' 4 ? primary 'Wang, K.' 5 ? primary 'Jeng, W.Y.' 6 ? primary 'Ko, T.P.' 7 ? primary 'Cao, R.' 8 ? primary 'Wang, A.H.' 9 ? primary 'Oldfield, E.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Dehydrosqualene synthase' 34787.496 1 ? ? ? ? 2 non-polymer syn '(6E,10R,13S,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,11,13,14,18,22-octaene' 406.686 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAAAAAMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYP YEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTY DVARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFS IEAQPIIELAARIYIEILDEVRQANYTLHERVFVEKRKKAKLFHEINSKYHRI ; _entity_poly.pdbx_seq_one_letter_code_can ;AAAAAAMTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYP YEYHHFQSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTY DVARRLGESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFS IEAQPIIELAARIYIEILDEVRQANYTLHERVFVEKRKKAKLFHEINSKYHRI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(6E,10R,13S,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,11,13,14,18,22-octaene' _pdbx_entity_nonpoly.comp_id DH7 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 ALA n 1 4 ALA n 1 5 ALA n 1 6 ALA n 1 7 MET n 1 8 THR n 1 9 MET n 1 10 MET n 1 11 ASP n 1 12 MET n 1 13 ASN n 1 14 PHE n 1 15 LYS n 1 16 TYR n 1 17 CYS n 1 18 HIS n 1 19 LYS n 1 20 ILE n 1 21 MET n 1 22 LYS n 1 23 LYS n 1 24 HIS n 1 25 SER n 1 26 LYS n 1 27 SER n 1 28 PHE n 1 29 SER n 1 30 TYR n 1 31 ALA n 1 32 PHE n 1 33 ASP n 1 34 LEU n 1 35 LEU n 1 36 PRO n 1 37 GLU n 1 38 ASP n 1 39 GLN n 1 40 ARG n 1 41 LYS n 1 42 ALA n 1 43 VAL n 1 44 TRP n 1 45 ALA n 1 46 ILE n 1 47 TYR n 1 48 ALA n 1 49 VAL n 1 50 CYS n 1 51 ARG n 1 52 LYS n 1 53 ILE n 1 54 ASP n 1 55 ASP n 1 56 SER n 1 57 ILE n 1 58 ASP n 1 59 VAL n 1 60 TYR n 1 61 GLY n 1 62 ASP n 1 63 ILE n 1 64 GLN n 1 65 PHE n 1 66 LEU n 1 67 ASN n 1 68 GLN n 1 69 ILE n 1 70 LYS n 1 71 GLU n 1 72 ASP n 1 73 ILE n 1 74 GLN n 1 75 SER n 1 76 ILE n 1 77 GLU n 1 78 LYS n 1 79 TYR n 1 80 PRO n 1 81 TYR n 1 82 GLU n 1 83 TYR n 1 84 HIS n 1 85 HIS n 1 86 PHE n 1 87 GLN n 1 88 SER n 1 89 ASP n 1 90 ARG n 1 91 ARG n 1 92 ILE n 1 93 MET n 1 94 MET n 1 95 ALA n 1 96 LEU n 1 97 GLN n 1 98 HIS n 1 99 VAL n 1 100 ALA n 1 101 GLN n 1 102 HIS n 1 103 LYS n 1 104 ASN n 1 105 ILE n 1 106 ALA n 1 107 PHE n 1 108 GLN n 1 109 SER n 1 110 PHE n 1 111 TYR n 1 112 ASN n 1 113 LEU n 1 114 ILE n 1 115 ASP n 1 116 THR n 1 117 VAL n 1 118 TYR n 1 119 LYS n 1 120 ASP n 1 121 GLN n 1 122 HIS n 1 123 PHE n 1 124 THR n 1 125 MET n 1 126 PHE n 1 127 GLU n 1 128 THR n 1 129 ASP n 1 130 ALA n 1 131 GLU n 1 132 LEU n 1 133 PHE n 1 134 GLY n 1 135 TYR n 1 136 CYS n 1 137 TYR n 1 138 GLY n 1 139 VAL n 1 140 ALA n 1 141 GLY n 1 142 THR n 1 143 VAL n 1 144 GLY n 1 145 GLU n 1 146 VAL n 1 147 LEU n 1 148 THR n 1 149 PRO n 1 150 ILE n 1 151 LEU n 1 152 SER n 1 153 ASP n 1 154 HIS n 1 155 GLU n 1 156 THR n 1 157 HIS n 1 158 GLN n 1 159 THR n 1 160 TYR n 1 161 ASP n 1 162 VAL n 1 163 ALA n 1 164 ARG n 1 165 ARG n 1 166 LEU n 1 167 GLY n 1 168 GLU n 1 169 SER n 1 170 LEU n 1 171 GLN n 1 172 LEU n 1 173 ILE n 1 174 ASN n 1 175 ILE n 1 176 LEU n 1 177 ARG n 1 178 ASP n 1 179 VAL n 1 180 GLY n 1 181 GLU n 1 182 ASP n 1 183 PHE n 1 184 GLU n 1 185 ASN n 1 186 GLU n 1 187 ARG n 1 188 ILE n 1 189 TYR n 1 190 PHE n 1 191 SER n 1 192 LYS n 1 193 GLN n 1 194 ARG n 1 195 LEU n 1 196 LYS n 1 197 GLN n 1 198 TYR n 1 199 GLU n 1 200 VAL n 1 201 ASP n 1 202 ILE n 1 203 ALA n 1 204 GLU n 1 205 VAL n 1 206 TYR n 1 207 GLN n 1 208 ASN n 1 209 GLY n 1 210 VAL n 1 211 ASN n 1 212 ASN n 1 213 HIS n 1 214 TYR n 1 215 ILE n 1 216 ASP n 1 217 LEU n 1 218 TRP n 1 219 GLU n 1 220 TYR n 1 221 TYR n 1 222 ALA n 1 223 ALA n 1 224 ILE n 1 225 ALA n 1 226 GLU n 1 227 LYS n 1 228 ASP n 1 229 PHE n 1 230 ARG n 1 231 ASP n 1 232 VAL n 1 233 MET n 1 234 ASP n 1 235 GLN n 1 236 ILE n 1 237 LYS n 1 238 VAL n 1 239 PHE n 1 240 SER n 1 241 ILE n 1 242 GLU n 1 243 ALA n 1 244 GLN n 1 245 PRO n 1 246 ILE n 1 247 ILE n 1 248 GLU n 1 249 LEU n 1 250 ALA n 1 251 ALA n 1 252 ARG n 1 253 ILE n 1 254 TYR n 1 255 ILE n 1 256 GLU n 1 257 ILE n 1 258 LEU n 1 259 ASP n 1 260 GLU n 1 261 VAL n 1 262 ARG n 1 263 GLN n 1 264 ALA n 1 265 ASN n 1 266 TYR n 1 267 THR n 1 268 LEU n 1 269 HIS n 1 270 GLU n 1 271 ARG n 1 272 VAL n 1 273 PHE n 1 274 VAL n 1 275 GLU n 1 276 LYS n 1 277 ARG n 1 278 LYS n 1 279 LYS n 1 280 ALA n 1 281 LYS n 1 282 LEU n 1 283 PHE n 1 284 HIS n 1 285 GLU n 1 286 ILE n 1 287 ASN n 1 288 SER n 1 289 LYS n 1 290 TYR n 1 291 HIS n 1 292 ARG n 1 293 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'crtm, SHAG_00345' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 585147 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain Bl21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector pET-32 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DH7 non-polymer . '(6E,10R,13S,18E)-2,6,10,15,19,23-hexamethyltetracosa-2,6,10,11,13,14,18,22-octaene' dehydrosqualene 'C30 H46' 406.686 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 -5 ? ? ? A . n A 1 2 ALA 2 -4 ? ? ? A . n A 1 3 ALA 3 -3 ? ? ? A . n A 1 4 ALA 4 -2 ? ? ? A . n A 1 5 ALA 5 -1 ? ? ? A . n A 1 6 ALA 6 0 ? ? ? A . n A 1 7 MET 7 1 1 MET MET A . n A 1 8 THR 8 2 2 THR THR A . n A 1 9 MET 9 3 3 MET MET A . n A 1 10 MET 10 4 4 MET MET A . n A 1 11 ASP 11 5 5 ASP ASP A . n A 1 12 MET 12 6 6 MET MET A . n A 1 13 ASN 13 7 7 ASN ASN A . n A 1 14 PHE 14 8 8 PHE PHE A . n A 1 15 LYS 15 9 9 LYS LYS A . n A 1 16 TYR 16 10 10 TYR TYR A . n A 1 17 CYS 17 11 11 CYS CYS A . n A 1 18 HIS 18 12 12 HIS HIS A . n A 1 19 LYS 19 13 13 LYS LYS A . n A 1 20 ILE 20 14 14 ILE ILE A . n A 1 21 MET 21 15 15 MET MET A . n A 1 22 LYS 22 16 16 LYS LYS A . n A 1 23 LYS 23 17 17 LYS LYS A . n A 1 24 HIS 24 18 18 HIS HIS A . n A 1 25 SER 25 19 19 SER SER A . n A 1 26 LYS 26 20 20 LYS LYS A . n A 1 27 SER 27 21 21 SER SER A . n A 1 28 PHE 28 22 22 PHE PHE A . n A 1 29 SER 29 23 23 SER SER A . n A 1 30 TYR 30 24 24 TYR TYR A . n A 1 31 ALA 31 25 25 ALA ALA A . n A 1 32 PHE 32 26 26 PHE PHE A . n A 1 33 ASP 33 27 27 ASP ASP A . n A 1 34 LEU 34 28 28 LEU LEU A . n A 1 35 LEU 35 29 29 LEU LEU A . n A 1 36 PRO 36 30 30 PRO PRO A . n A 1 37 GLU 37 31 31 GLU GLU A . n A 1 38 ASP 38 32 32 ASP ASP A . n A 1 39 GLN 39 33 33 GLN GLN A . n A 1 40 ARG 40 34 34 ARG ARG A . n A 1 41 LYS 41 35 35 LYS LYS A . n A 1 42 ALA 42 36 36 ALA ALA A . n A 1 43 VAL 43 37 37 VAL VAL A . n A 1 44 TRP 44 38 38 TRP TRP A . n A 1 45 ALA 45 39 39 ALA ALA A . n A 1 46 ILE 46 40 40 ILE ILE A . n A 1 47 TYR 47 41 41 TYR TYR A . n A 1 48 ALA 48 42 42 ALA ALA A . n A 1 49 VAL 49 43 43 VAL VAL A . n A 1 50 CYS 50 44 44 CYS CYS A . n A 1 51 ARG 51 45 45 ARG ARG A . n A 1 52 LYS 52 46 46 LYS LYS A . n A 1 53 ILE 53 47 47 ILE ILE A . n A 1 54 ASP 54 48 48 ASP ASP A . n A 1 55 ASP 55 49 49 ASP ASP A . n A 1 56 SER 56 50 50 SER SER A . n A 1 57 ILE 57 51 51 ILE ILE A . n A 1 58 ASP 58 52 ? ? ? A . n A 1 59 VAL 59 53 ? ? ? A . n A 1 60 TYR 60 54 ? ? ? A . n A 1 61 GLY 61 55 ? ? ? A . n A 1 62 ASP 62 56 ? ? ? A . n A 1 63 ILE 63 57 57 ILE ILE A . n A 1 64 GLN 64 58 58 GLN GLN A . n A 1 65 PHE 65 59 59 PHE PHE A . n A 1 66 LEU 66 60 60 LEU LEU A . n A 1 67 ASN 67 61 61 ASN ASN A . n A 1 68 GLN 68 62 62 GLN GLN A . n A 1 69 ILE 69 63 63 ILE ILE A . n A 1 70 LYS 70 64 64 LYS LYS A . n A 1 71 GLU 71 65 65 GLU GLU A . n A 1 72 ASP 72 66 66 ASP ASP A . n A 1 73 ILE 73 67 67 ILE ILE A . n A 1 74 GLN 74 68 68 GLN GLN A . n A 1 75 SER 75 69 69 SER SER A . n A 1 76 ILE 76 70 70 ILE ILE A . n A 1 77 GLU 77 71 71 GLU GLU A . n A 1 78 LYS 78 72 72 LYS LYS A . n A 1 79 TYR 79 73 73 TYR TYR A . n A 1 80 PRO 80 74 74 PRO PRO A . n A 1 81 TYR 81 75 75 TYR TYR A . n A 1 82 GLU 82 76 76 GLU GLU A . n A 1 83 TYR 83 77 77 TYR TYR A . n A 1 84 HIS 84 78 78 HIS HIS A . n A 1 85 HIS 85 79 79 HIS HIS A . n A 1 86 PHE 86 80 80 PHE PHE A . n A 1 87 GLN 87 81 81 GLN GLN A . n A 1 88 SER 88 82 82 SER SER A . n A 1 89 ASP 89 83 83 ASP ASP A . n A 1 90 ARG 90 84 84 ARG ARG A . n A 1 91 ARG 91 85 85 ARG ARG A . n A 1 92 ILE 92 86 86 ILE ILE A . n A 1 93 MET 93 87 87 MET MET A . n A 1 94 MET 94 88 88 MET MET A . n A 1 95 ALA 95 89 89 ALA ALA A . n A 1 96 LEU 96 90 90 LEU LEU A . n A 1 97 GLN 97 91 91 GLN GLN A . n A 1 98 HIS 98 92 92 HIS HIS A . n A 1 99 VAL 99 93 93 VAL VAL A . n A 1 100 ALA 100 94 94 ALA ALA A . n A 1 101 GLN 101 95 95 GLN GLN A . n A 1 102 HIS 102 96 96 HIS HIS A . n A 1 103 LYS 103 97 97 LYS LYS A . n A 1 104 ASN 104 98 98 ASN ASN A . n A 1 105 ILE 105 99 99 ILE ILE A . n A 1 106 ALA 106 100 100 ALA ALA A . n A 1 107 PHE 107 101 101 PHE PHE A . n A 1 108 GLN 108 102 102 GLN GLN A . n A 1 109 SER 109 103 103 SER SER A . n A 1 110 PHE 110 104 104 PHE PHE A . n A 1 111 TYR 111 105 105 TYR TYR A . n A 1 112 ASN 112 106 106 ASN ASN A . n A 1 113 LEU 113 107 107 LEU LEU A . n A 1 114 ILE 114 108 108 ILE ILE A . n A 1 115 ASP 115 109 109 ASP ASP A . n A 1 116 THR 116 110 110 THR THR A . n A 1 117 VAL 117 111 111 VAL VAL A . n A 1 118 TYR 118 112 112 TYR TYR A . n A 1 119 LYS 119 113 113 LYS LYS A . n A 1 120 ASP 120 114 114 ASP ASP A . n A 1 121 GLN 121 115 115 GLN GLN A . n A 1 122 HIS 122 116 116 HIS HIS A . n A 1 123 PHE 123 117 117 PHE PHE A . n A 1 124 THR 124 118 118 THR THR A . n A 1 125 MET 125 119 119 MET MET A . n A 1 126 PHE 126 120 120 PHE PHE A . n A 1 127 GLU 127 121 121 GLU GLU A . n A 1 128 THR 128 122 122 THR THR A . n A 1 129 ASP 129 123 123 ASP ASP A . n A 1 130 ALA 130 124 124 ALA ALA A . n A 1 131 GLU 131 125 125 GLU GLU A . n A 1 132 LEU 132 126 126 LEU LEU A . n A 1 133 PHE 133 127 127 PHE PHE A . n A 1 134 GLY 134 128 128 GLY GLY A . n A 1 135 TYR 135 129 129 TYR TYR A . n A 1 136 CYS 136 130 130 CYS CYS A . n A 1 137 TYR 137 131 131 TYR TYR A . n A 1 138 GLY 138 132 132 GLY GLY A . n A 1 139 VAL 139 133 133 VAL VAL A . n A 1 140 ALA 140 134 134 ALA ALA A . n A 1 141 GLY 141 135 135 GLY GLY A . n A 1 142 THR 142 136 136 THR THR A . n A 1 143 VAL 143 137 137 VAL VAL A . n A 1 144 GLY 144 138 138 GLY GLY A . n A 1 145 GLU 145 139 139 GLU GLU A . n A 1 146 VAL 146 140 140 VAL VAL A . n A 1 147 LEU 147 141 141 LEU LEU A . n A 1 148 THR 148 142 142 THR THR A . n A 1 149 PRO 149 143 143 PRO PRO A . n A 1 150 ILE 150 144 144 ILE ILE A . n A 1 151 LEU 151 145 145 LEU LEU A . n A 1 152 SER 152 146 146 SER SER A . n A 1 153 ASP 153 147 147 ASP ASP A . n A 1 154 HIS 154 148 148 HIS HIS A . n A 1 155 GLU 155 149 149 GLU GLU A . n A 1 156 THR 156 150 150 THR THR A . n A 1 157 HIS 157 151 151 HIS HIS A . n A 1 158 GLN 158 152 152 GLN GLN A . n A 1 159 THR 159 153 153 THR THR A . n A 1 160 TYR 160 154 154 TYR TYR A . n A 1 161 ASP 161 155 155 ASP ASP A . n A 1 162 VAL 162 156 156 VAL VAL A . n A 1 163 ALA 163 157 157 ALA ALA A . n A 1 164 ARG 164 158 158 ARG ARG A . n A 1 165 ARG 165 159 159 ARG ARG A . n A 1 166 LEU 166 160 160 LEU LEU A . n A 1 167 GLY 167 161 161 GLY GLY A . n A 1 168 GLU 168 162 162 GLU GLU A . n A 1 169 SER 169 163 163 SER SER A . n A 1 170 LEU 170 164 164 LEU LEU A . n A 1 171 GLN 171 165 165 GLN GLN A . n A 1 172 LEU 172 166 166 LEU LEU A . n A 1 173 ILE 173 167 167 ILE ILE A . n A 1 174 ASN 174 168 168 ASN ASN A . n A 1 175 ILE 175 169 169 ILE ILE A . n A 1 176 LEU 176 170 170 LEU LEU A . n A 1 177 ARG 177 171 171 ARG ARG A . n A 1 178 ASP 178 172 172 ASP ASP A . n A 1 179 VAL 179 173 173 VAL VAL A . n A 1 180 GLY 180 174 174 GLY GLY A . n A 1 181 GLU 181 175 175 GLU GLU A . n A 1 182 ASP 182 176 176 ASP ASP A . n A 1 183 PHE 183 177 177 PHE PHE A . n A 1 184 GLU 184 178 178 GLU GLU A . n A 1 185 ASN 185 179 179 ASN ASN A . n A 1 186 GLU 186 180 180 GLU GLU A . n A 1 187 ARG 187 181 181 ARG ARG A . n A 1 188 ILE 188 182 182 ILE ILE A . n A 1 189 TYR 189 183 183 TYR TYR A . n A 1 190 PHE 190 184 184 PHE PHE A . n A 1 191 SER 191 185 185 SER SER A . n A 1 192 LYS 192 186 186 LYS LYS A . n A 1 193 GLN 193 187 187 GLN GLN A . n A 1 194 ARG 194 188 188 ARG ARG A . n A 1 195 LEU 195 189 189 LEU LEU A . n A 1 196 LYS 196 190 190 LYS LYS A . n A 1 197 GLN 197 191 191 GLN GLN A . n A 1 198 TYR 198 192 192 TYR TYR A . n A 1 199 GLU 199 193 193 GLU GLU A . n A 1 200 VAL 200 194 194 VAL VAL A . n A 1 201 ASP 201 195 195 ASP ASP A . n A 1 202 ILE 202 196 196 ILE ILE A . n A 1 203 ALA 203 197 197 ALA ALA A . n A 1 204 GLU 204 198 198 GLU GLU A . n A 1 205 VAL 205 199 199 VAL VAL A . n A 1 206 TYR 206 200 200 TYR TYR A . n A 1 207 GLN 207 201 201 GLN GLN A . n A 1 208 ASN 208 202 202 ASN ASN A . n A 1 209 GLY 209 203 203 GLY GLY A . n A 1 210 VAL 210 204 204 VAL VAL A . n A 1 211 ASN 211 205 205 ASN ASN A . n A 1 212 ASN 212 206 206 ASN ASN A . n A 1 213 HIS 213 207 207 HIS HIS A . n A 1 214 TYR 214 208 208 TYR TYR A . n A 1 215 ILE 215 209 209 ILE ILE A . n A 1 216 ASP 216 210 210 ASP ASP A . n A 1 217 LEU 217 211 211 LEU LEU A . n A 1 218 TRP 218 212 212 TRP TRP A . n A 1 219 GLU 219 213 213 GLU GLU A . n A 1 220 TYR 220 214 214 TYR TYR A . n A 1 221 TYR 221 215 215 TYR TYR A . n A 1 222 ALA 222 216 216 ALA ALA A . n A 1 223 ALA 223 217 217 ALA ALA A . n A 1 224 ILE 224 218 218 ILE ILE A . n A 1 225 ALA 225 219 219 ALA ALA A . n A 1 226 GLU 226 220 220 GLU GLU A . n A 1 227 LYS 227 221 221 LYS LYS A . n A 1 228 ASP 228 222 222 ASP ASP A . n A 1 229 PHE 229 223 223 PHE PHE A . n A 1 230 ARG 230 224 224 ARG ARG A . n A 1 231 ASP 231 225 225 ASP ASP A . n A 1 232 VAL 232 226 226 VAL VAL A . n A 1 233 MET 233 227 227 MET MET A . n A 1 234 ASP 234 228 228 ASP ASP A . n A 1 235 GLN 235 229 229 GLN GLN A . n A 1 236 ILE 236 230 230 ILE ILE A . n A 1 237 LYS 237 231 231 LYS LYS A . n A 1 238 VAL 238 232 232 VAL VAL A . n A 1 239 PHE 239 233 233 PHE PHE A . n A 1 240 SER 240 234 234 SER SER A . n A 1 241 ILE 241 235 235 ILE ILE A . n A 1 242 GLU 242 236 236 GLU GLU A . n A 1 243 ALA 243 237 237 ALA ALA A . n A 1 244 GLN 244 238 238 GLN GLN A . n A 1 245 PRO 245 239 239 PRO PRO A . n A 1 246 ILE 246 240 240 ILE ILE A . n A 1 247 ILE 247 241 241 ILE ILE A . n A 1 248 GLU 248 242 242 GLU GLU A . n A 1 249 LEU 249 243 243 LEU LEU A . n A 1 250 ALA 250 244 244 ALA ALA A . n A 1 251 ALA 251 245 245 ALA ALA A . n A 1 252 ARG 252 246 246 ARG ARG A . n A 1 253 ILE 253 247 247 ILE ILE A . n A 1 254 TYR 254 248 248 TYR TYR A . n A 1 255 ILE 255 249 249 ILE ILE A . n A 1 256 GLU 256 250 250 GLU GLU A . n A 1 257 ILE 257 251 251 ILE ILE A . n A 1 258 LEU 258 252 252 LEU LEU A . n A 1 259 ASP 259 253 253 ASP ASP A . n A 1 260 GLU 260 254 254 GLU GLU A . n A 1 261 VAL 261 255 255 VAL VAL A . n A 1 262 ARG 262 256 256 ARG ARG A . n A 1 263 GLN 263 257 257 GLN GLN A . n A 1 264 ALA 264 258 258 ALA ALA A . n A 1 265 ASN 265 259 259 ASN ASN A . n A 1 266 TYR 266 260 260 TYR TYR A . n A 1 267 THR 267 261 261 THR THR A . n A 1 268 LEU 268 262 262 LEU LEU A . n A 1 269 HIS 269 263 263 HIS HIS A . n A 1 270 GLU 270 264 264 GLU GLU A . n A 1 271 ARG 271 265 265 ARG ARG A . n A 1 272 VAL 272 266 266 VAL VAL A . n A 1 273 PHE 273 267 267 PHE PHE A . n A 1 274 VAL 274 268 268 VAL VAL A . n A 1 275 GLU 275 269 269 GLU GLU A . n A 1 276 LYS 276 270 270 LYS LYS A . n A 1 277 ARG 277 271 271 ARG ARG A . n A 1 278 LYS 278 272 272 LYS LYS A . n A 1 279 LYS 279 273 273 LYS LYS A . n A 1 280 ALA 280 274 274 ALA ALA A . n A 1 281 LYS 281 275 275 LYS LYS A . n A 1 282 LEU 282 276 276 LEU LEU A . n A 1 283 PHE 283 277 277 PHE PHE A . n A 1 284 HIS 284 278 278 HIS HIS A . n A 1 285 GLU 285 279 279 GLU GLU A . n A 1 286 ILE 286 280 280 ILE ILE A . n A 1 287 ASN 287 281 281 ASN ASN A . n A 1 288 SER 288 282 282 SER SER A . n A 1 289 LYS 289 283 283 LYS LYS A . n A 1 290 TYR 290 284 284 TYR TYR A . n A 1 291 HIS 291 285 ? ? ? A . n A 1 292 ARG 292 286 ? ? ? A . n A 1 293 ILE 293 287 ? ? ? A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DH7 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 288 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id DH7 _pdbx_nonpoly_scheme.auth_mon_id DH7 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3NRI _cell.length_a 80.585 _cell.length_b 80.585 _cell.length_c 90.363 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NRI _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3NRI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.43 _exptl_crystal.density_percent_sol 49.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.75M sodium potassium tartrate, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-04-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 21-ID-G' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 21-ID-G _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3NRI _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.8 _reflns.number_obs 8584 _reflns.number_all 8790 _reflns.percent_possible_obs 98.89 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 10.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3NRI _refine.ls_number_reflns_obs 7776 _refine.ls_number_reflns_all 7864 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 2.85 _refine.ls_percent_reflns_obs 98.89 _refine.ls_R_factor_obs 0.21117 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20650 _refine.ls_R_factor_R_free 0.30707 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 395 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.934 _refine.correlation_coeff_Fo_to_Fc_free 0.853 _refine.B_iso_mean 48.880 _refine.aniso_B[1][1] 1.45 _refine.aniso_B[2][2] 1.45 _refine.aniso_B[3][3] -2.17 _refine.aniso_B[1][2] 0.72 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.494 _refine.overall_SU_ML 0.355 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 18.311 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2353 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2383 _refine_hist.d_res_high 2.85 _refine_hist.d_res_low 30.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.004 0.022 ? 2436 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.480 1.942 ? 3277 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.154 5.000 ? 277 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 37.198 24.222 ? 135 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 21.972 15.000 ? 439 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 27.812 15.000 ? 14 'X-RAY DIFFRACTION' ? r_chiral_restr 0.046 0.200 ? 342 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1872 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.936 1.500 ? 1390 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.880 2.000 ? 2250 'X-RAY DIFFRACTION' ? r_scbond_it 2.797 3.000 ? 1046 'X-RAY DIFFRACTION' ? r_scangle_it 4.743 4.500 ? 1027 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.850 _refine_ls_shell.d_res_low 2.923 _refine_ls_shell.number_reflns_R_work 509 _refine_ls_shell.R_factor_R_work 0.301 _refine_ls_shell.percent_reflns_obs 88.81 _refine_ls_shell.R_factor_R_free 0.489 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 23 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 3NRI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3NRI _struct.title 'Crystal structure of the C(30) carotenoid dehydrosqualene synthase from S. aureus complexed with dehydrosqualene (DHS)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NRI _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'dehydrosqualene synthase, terpene, carotenoid, CrtM, DHS, virulence factor, prenyl transferase, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D2UVC8_STAAU _struct_ref.pdbx_db_accession D2UVC8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTMMDMNFKYCHKIMKKHSKSFSYAFDLLPEDQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHF QSDRRIMMALQHVAQHKNIAFQSFYNLIDTVYKDQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHETHQTYDVARRL GESLQLINILRDVGEDFENERIYFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQPI IELAARIYIEILDEVRQANYTLHERVFVEKRKKAKLFHEINSKYHRI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NRI _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 293 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D2UVC8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 287 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 287 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NRI ALA A 1 ? UNP D2UVC8 ? ? 'expression tag' -5 1 1 3NRI ALA A 2 ? UNP D2UVC8 ? ? 'expression tag' -4 2 1 3NRI ALA A 3 ? UNP D2UVC8 ? ? 'expression tag' -3 3 1 3NRI ALA A 4 ? UNP D2UVC8 ? ? 'expression tag' -2 4 1 3NRI ALA A 5 ? UNP D2UVC8 ? ? 'expression tag' -1 5 1 3NRI ALA A 6 ? UNP D2UVC8 ? ? 'expression tag' 0 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 8 ? SER A 25 ? THR A 2 SER A 19 1 ? 18 HELX_P HELX_P2 2 SER A 25 ? ASP A 33 ? SER A 19 ASP A 27 1 ? 9 HELX_P HELX_P3 3 PRO A 36 ? SER A 56 ? PRO A 30 SER A 50 1 ? 21 HELX_P HELX_P4 4 ILE A 63 ? TYR A 79 ? ILE A 57 TYR A 73 1 ? 17 HELX_P HELX_P5 5 ASP A 89 ? LYS A 103 ? ASP A 83 LYS A 97 1 ? 15 HELX_P HELX_P6 6 ALA A 106 ? LYS A 119 ? ALA A 100 LYS A 113 1 ? 14 HELX_P HELX_P7 7 THR A 128 ? ALA A 140 ? THR A 122 ALA A 134 1 ? 13 HELX_P HELX_P8 8 ALA A 140 ? SER A 152 ? ALA A 134 SER A 146 1 ? 13 HELX_P HELX_P9 9 THR A 156 ? ASP A 178 ? THR A 150 ASP A 172 1 ? 23 HELX_P HELX_P10 10 ASP A 178 ? ASN A 185 ? ASP A 172 ASN A 179 1 ? 8 HELX_P HELX_P11 11 SER A 191 ? GLU A 199 ? SER A 185 GLU A 193 1 ? 9 HELX_P HELX_P12 12 ASP A 201 ? GLY A 209 ? ASP A 195 GLY A 203 1 ? 9 HELX_P HELX_P13 13 ASN A 211 ? ASP A 234 ? ASN A 205 ASP A 228 1 ? 24 HELX_P HELX_P14 14 GLN A 235 ? PHE A 239 ? GLN A 229 PHE A 233 5 ? 5 HELX_P HELX_P15 15 GLU A 242 ? ALA A 264 ? GLU A 236 ALA A 258 1 ? 23 HELX_P HELX_P16 16 GLU A 275 ? SER A 288 ? GLU A 269 SER A 282 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id DH7 _struct_site.pdbx_auth_seq_id 288 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 15 _struct_site.details 'BINDING SITE FOR RESIDUE DH7 A 288' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 HIS A 24 ? HIS A 18 . ? 1_555 ? 2 AC1 15 SER A 25 ? SER A 19 . ? 1_555 ? 3 AC1 15 LYS A 26 ? LYS A 20 . ? 1_555 ? 4 AC1 15 SER A 27 ? SER A 21 . ? 1_555 ? 5 AC1 15 PHE A 28 ? PHE A 22 . ? 1_555 ? 6 AC1 15 CYS A 50 ? CYS A 44 . ? 1_555 ? 7 AC1 15 ASP A 54 ? ASP A 48 . ? 1_555 ? 8 AC1 15 VAL A 139 ? VAL A 133 . ? 1_555 ? 9 AC1 15 VAL A 143 ? VAL A 137 . ? 1_555 ? 10 AC1 15 ASN A 174 ? ASN A 168 . ? 1_555 ? 11 AC1 15 ARG A 177 ? ARG A 171 . ? 1_555 ? 12 AC1 15 TYR A 254 ? TYR A 248 . ? 1_555 ? 13 AC1 15 ARG A 271 ? ARG A 265 . ? 1_555 ? 14 AC1 15 VAL A 272 ? VAL A 266 . ? 1_555 ? 15 AC1 15 PHE A 273 ? PHE A 267 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OH _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 TYR _pdbx_validate_close_contact.auth_seq_id_1 77 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 NH2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ARG _pdbx_validate_close_contact.auth_seq_id_2 84 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 2 ? ? -62.36 -160.42 2 1 PRO A 30 ? ? -43.38 151.03 3 1 SER A 50 ? ? -49.30 -16.00 4 1 SER A 82 ? ? -99.24 -110.00 5 1 ALA A 134 ? ? -141.97 -45.04 6 1 GLU A 264 ? ? -171.99 143.14 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA -5 ? A ALA 1 2 1 Y 1 A ALA -4 ? A ALA 2 3 1 Y 1 A ALA -3 ? A ALA 3 4 1 Y 1 A ALA -2 ? A ALA 4 5 1 Y 1 A ALA -1 ? A ALA 5 6 1 Y 1 A ALA 0 ? A ALA 6 7 1 Y 1 A ASP 52 ? A ASP 58 8 1 Y 1 A VAL 53 ? A VAL 59 9 1 Y 1 A TYR 54 ? A TYR 60 10 1 Y 1 A GLY 55 ? A GLY 61 11 1 Y 1 A ASP 56 ? A ASP 62 12 1 Y 1 A HIS 285 ? A HIS 291 13 1 Y 1 A ARG 286 ? A ARG 292 14 1 Y 1 A ILE 287 ? A ILE 293 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DH7 C1 C N N 88 DH7 C2 C N N 89 DH7 C3 C N N 90 DH7 C4 C N N 91 DH7 C5 C N N 92 DH7 C6 C N N 93 DH7 C7 C N N 94 DH7 C8 C N N 95 DH7 C9 C N N 96 DH7 C10 C N R 97 DH7 C11 C N S 98 DH7 C12 C N N 99 DH7 C13 C N N 100 DH7 C14 C N N 101 DH7 C15 C N N 102 DH7 C16 C N N 103 DH7 C17 C N N 104 DH7 C18 C N N 105 DH7 C19 C N N 106 DH7 C20 C N N 107 DH7 C21 C N N 108 DH7 C22 C N N 109 DH7 C23 C N N 110 DH7 C24 C N N 111 DH7 C25 C N N 112 DH7 C26 C N N 113 DH7 C27 C N N 114 DH7 C28 C N N 115 DH7 C29 C N N 116 DH7 H1 H N N 117 DH7 H2 H N N 118 DH7 H3 H N N 119 DH7 H4 H N N 120 DH7 H5 H N N 121 DH7 H6 H N N 122 DH7 H7 H N N 123 DH7 H8 H N N 124 DH7 H9 H N N 125 DH7 H10 H N N 126 DH7 H11 H N N 127 DH7 H12 H N N 128 DH7 H13 H N N 129 DH7 H14 H N N 130 DH7 H15 H N N 131 DH7 H16 H N N 132 DH7 H17 H N N 133 DH7 H18 H N N 134 DH7 H19 H N N 135 DH7 H20 H N N 136 DH7 H21 H N N 137 DH7 H22 H N N 138 DH7 H23 H N N 139 DH7 H24 H N N 140 DH7 H25 H N N 141 DH7 H26 H N N 142 DH7 H27 H N N 143 DH7 H28 H N N 144 DH7 H29 H N N 145 DH7 H30 H N N 146 DH7 H31 H N N 147 DH7 H32 H N N 148 DH7 H33 H N N 149 DH7 H34 H N N 150 DH7 H35 H N N 151 DH7 H36 H N N 152 DH7 H37 H N N 153 DH7 H38 H N N 154 DH7 H39 H N N 155 DH7 H40 H N N 156 DH7 H41 H N N 157 DH7 H42 H N N 158 DH7 H43 H N N 159 DH7 C30 C N N 160 DH7 H44 H N N 161 DH7 H45 H N N 162 DH7 H46 H N N 163 GLN N N N N 164 GLN CA C N S 165 GLN C C N N 166 GLN O O N N 167 GLN CB C N N 168 GLN CG C N N 169 GLN CD C N N 170 GLN OE1 O N N 171 GLN NE2 N N N 172 GLN OXT O N N 173 GLN H H N N 174 GLN H2 H N N 175 GLN HA H N N 176 GLN HB2 H N N 177 GLN HB3 H N N 178 GLN HG2 H N N 179 GLN HG3 H N N 180 GLN HE21 H N N 181 GLN HE22 H N N 182 GLN HXT H N N 183 GLU N N N N 184 GLU CA C N S 185 GLU C C N N 186 GLU O O N N 187 GLU CB C N N 188 GLU CG C N N 189 GLU CD C N N 190 GLU OE1 O N N 191 GLU OE2 O N N 192 GLU OXT O N N 193 GLU H H N N 194 GLU H2 H N N 195 GLU HA H N N 196 GLU HB2 H N N 197 GLU HB3 H N N 198 GLU HG2 H N N 199 GLU HG3 H N N 200 GLU HE2 H N N 201 GLU HXT H N N 202 GLY N N N N 203 GLY CA C N N 204 GLY C C N N 205 GLY O O N N 206 GLY OXT O N N 207 GLY H H N N 208 GLY H2 H N N 209 GLY HA2 H N N 210 GLY HA3 H N N 211 GLY HXT H N N 212 HIS N N N N 213 HIS CA C N S 214 HIS C C N N 215 HIS O O N N 216 HIS CB C N N 217 HIS CG C Y N 218 HIS ND1 N Y N 219 HIS CD2 C Y N 220 HIS CE1 C Y N 221 HIS NE2 N Y N 222 HIS OXT O N N 223 HIS H H N N 224 HIS H2 H N N 225 HIS HA H N N 226 HIS HB2 H N N 227 HIS HB3 H N N 228 HIS HD1 H N N 229 HIS HD2 H N N 230 HIS HE1 H N N 231 HIS HE2 H N N 232 HIS HXT H N N 233 ILE N N N N 234 ILE CA C N S 235 ILE C C N N 236 ILE O O N N 237 ILE CB C N S 238 ILE CG1 C N N 239 ILE CG2 C N N 240 ILE CD1 C N N 241 ILE OXT O N N 242 ILE H H N N 243 ILE H2 H N N 244 ILE HA H N N 245 ILE HB H N N 246 ILE HG12 H N N 247 ILE HG13 H N N 248 ILE HG21 H N N 249 ILE HG22 H N N 250 ILE HG23 H N N 251 ILE HD11 H N N 252 ILE HD12 H N N 253 ILE HD13 H N N 254 ILE HXT H N N 255 LEU N N N N 256 LEU CA C N S 257 LEU C C N N 258 LEU O O N N 259 LEU CB C N N 260 LEU CG C N N 261 LEU CD1 C N N 262 LEU CD2 C N N 263 LEU OXT O N N 264 LEU H H N N 265 LEU H2 H N N 266 LEU HA H N N 267 LEU HB2 H N N 268 LEU HB3 H N N 269 LEU HG H N N 270 LEU HD11 H N N 271 LEU HD12 H N N 272 LEU HD13 H N N 273 LEU HD21 H N N 274 LEU HD22 H N N 275 LEU HD23 H N N 276 LEU HXT H N N 277 LYS N N N N 278 LYS CA C N S 279 LYS C C N N 280 LYS O O N N 281 LYS CB C N N 282 LYS CG C N N 283 LYS CD C N N 284 LYS CE C N N 285 LYS NZ N N N 286 LYS OXT O N N 287 LYS H H N N 288 LYS H2 H N N 289 LYS HA H N N 290 LYS HB2 H N N 291 LYS HB3 H N N 292 LYS HG2 H N N 293 LYS HG3 H N N 294 LYS HD2 H N N 295 LYS HD3 H N N 296 LYS HE2 H N N 297 LYS HE3 H N N 298 LYS HZ1 H N N 299 LYS HZ2 H N N 300 LYS HZ3 H N N 301 LYS HXT H N N 302 MET N N N N 303 MET CA C N S 304 MET C C N N 305 MET O O N N 306 MET CB C N N 307 MET CG C N N 308 MET SD S N N 309 MET CE C N N 310 MET OXT O N N 311 MET H H N N 312 MET H2 H N N 313 MET HA H N N 314 MET HB2 H N N 315 MET HB3 H N N 316 MET HG2 H N N 317 MET HG3 H N N 318 MET HE1 H N N 319 MET HE2 H N N 320 MET HE3 H N N 321 MET HXT H N N 322 PHE N N N N 323 PHE CA C N S 324 PHE C C N N 325 PHE O O N N 326 PHE CB C N N 327 PHE CG C Y N 328 PHE CD1 C Y N 329 PHE CD2 C Y N 330 PHE CE1 C Y N 331 PHE CE2 C Y N 332 PHE CZ C Y N 333 PHE OXT O N N 334 PHE H H N N 335 PHE H2 H N N 336 PHE HA H N N 337 PHE HB2 H N N 338 PHE HB3 H N N 339 PHE HD1 H N N 340 PHE HD2 H N N 341 PHE HE1 H N N 342 PHE HE2 H N N 343 PHE HZ H N N 344 PHE HXT H N N 345 PRO N N N N 346 PRO CA C N S 347 PRO C C N N 348 PRO O O N N 349 PRO CB C N N 350 PRO CG C N N 351 PRO CD C N N 352 PRO OXT O N N 353 PRO H H N N 354 PRO HA H N N 355 PRO HB2 H N N 356 PRO HB3 H N N 357 PRO HG2 H N N 358 PRO HG3 H N N 359 PRO HD2 H N N 360 PRO HD3 H N N 361 PRO HXT H N N 362 SER N N N N 363 SER CA C N S 364 SER C C N N 365 SER O O N N 366 SER CB C N N 367 SER OG O N N 368 SER OXT O N N 369 SER H H N N 370 SER H2 H N N 371 SER HA H N N 372 SER HB2 H N N 373 SER HB3 H N N 374 SER HG H N N 375 SER HXT H N N 376 THR N N N N 377 THR CA C N S 378 THR C C N N 379 THR O O N N 380 THR CB C N R 381 THR OG1 O N N 382 THR CG2 C N N 383 THR OXT O N N 384 THR H H N N 385 THR H2 H N N 386 THR HA H N N 387 THR HB H N N 388 THR HG1 H N N 389 THR HG21 H N N 390 THR HG22 H N N 391 THR HG23 H N N 392 THR HXT H N N 393 TRP N N N N 394 TRP CA C N S 395 TRP C C N N 396 TRP O O N N 397 TRP CB C N N 398 TRP CG C Y N 399 TRP CD1 C Y N 400 TRP CD2 C Y N 401 TRP NE1 N Y N 402 TRP CE2 C Y N 403 TRP CE3 C Y N 404 TRP CZ2 C Y N 405 TRP CZ3 C Y N 406 TRP CH2 C Y N 407 TRP OXT O N N 408 TRP H H N N 409 TRP H2 H N N 410 TRP HA H N N 411 TRP HB2 H N N 412 TRP HB3 H N N 413 TRP HD1 H N N 414 TRP HE1 H N N 415 TRP HE3 H N N 416 TRP HZ2 H N N 417 TRP HZ3 H N N 418 TRP HH2 H N N 419 TRP HXT H N N 420 TYR N N N N 421 TYR CA C N S 422 TYR C C N N 423 TYR O O N N 424 TYR CB C N N 425 TYR CG C Y N 426 TYR CD1 C Y N 427 TYR CD2 C Y N 428 TYR CE1 C Y N 429 TYR CE2 C Y N 430 TYR CZ C Y N 431 TYR OH O N N 432 TYR OXT O N N 433 TYR H H N N 434 TYR H2 H N N 435 TYR HA H N N 436 TYR HB2 H N N 437 TYR HB3 H N N 438 TYR HD1 H N N 439 TYR HD2 H N N 440 TYR HE1 H N N 441 TYR HE2 H N N 442 TYR HH H N N 443 TYR HXT H N N 444 VAL N N N N 445 VAL CA C N S 446 VAL C C N N 447 VAL O O N N 448 VAL CB C N N 449 VAL CG1 C N N 450 VAL CG2 C N N 451 VAL OXT O N N 452 VAL H H N N 453 VAL H2 H N N 454 VAL HA H N N 455 VAL HB H N N 456 VAL HG11 H N N 457 VAL HG12 H N N 458 VAL HG13 H N N 459 VAL HG21 H N N 460 VAL HG22 H N N 461 VAL HG23 H N N 462 VAL HXT H N N 463 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DH7 C1 C24 sing N N 83 DH7 C1 H1 sing N N 84 DH7 C1 H2 sing N N 85 DH7 C1 H3 sing N N 86 DH7 C2 C24 sing N N 87 DH7 C2 H4 sing N N 88 DH7 C2 H5 sing N N 89 DH7 C2 H6 sing N N 90 DH7 C3 C25 sing N N 91 DH7 C3 H7 sing N N 92 DH7 C3 H8 sing N N 93 DH7 C3 H9 sing N N 94 DH7 C4 C26 sing N N 95 DH7 C4 H10 sing N N 96 DH7 C4 H11 sing N N 97 DH7 C4 H12 sing N N 98 DH7 C5 C27 sing N N 99 DH7 C5 H13 sing N N 100 DH7 C5 H14 sing N N 101 DH7 C5 H15 sing N N 102 DH7 C6 C28 sing N N 103 DH7 C6 H16 sing N N 104 DH7 C6 H17 sing N N 105 DH7 C6 H18 sing N N 106 DH7 C7 C29 sing N N 107 DH7 C7 H19 sing N N 108 DH7 C7 H20 sing N N 109 DH7 C7 H21 sing N N 110 DH7 C8 C9 sing N N 111 DH7 C8 C10 doub N N 112 DH7 C8 H22 sing N N 113 DH7 C9 C11 doub N N 114 DH7 C9 H23 sing N N 115 DH7 C10 C26 doub N N 116 DH7 C11 C27 doub N N 117 DH7 C12 C16 sing N N 118 DH7 C12 C24 doub N N 119 DH7 C12 H24 sing N N 120 DH7 C13 C17 sing N N 121 DH7 C13 C25 doub N N 122 DH7 C13 H25 sing N N 123 DH7 C14 C18 sing N N 124 DH7 C14 C28 doub N E 125 DH7 C14 H26 sing N N 126 DH7 C15 C19 sing N N 127 DH7 C15 C29 doub N E 128 DH7 C15 H27 sing N N 129 DH7 C16 C22 sing N N 130 DH7 C16 H28 sing N N 131 DH7 C16 H29 sing N N 132 DH7 C17 C23 sing N N 133 DH7 C17 H30 sing N N 134 DH7 C17 H31 sing N N 135 DH7 C18 C20 sing N N 136 DH7 C18 H32 sing N N 137 DH7 C18 H33 sing N N 138 DH7 C19 C21 sing N N 139 DH7 C19 H34 sing N N 140 DH7 C19 H35 sing N N 141 DH7 C20 C26 sing N N 142 DH7 C20 H36 sing N N 143 DH7 C20 H37 sing N N 144 DH7 C21 C27 sing N N 145 DH7 C21 H38 sing N N 146 DH7 C21 H39 sing N N 147 DH7 C22 C28 sing N N 148 DH7 C22 H40 sing N N 149 DH7 C22 H41 sing N N 150 DH7 C23 C29 sing N N 151 DH7 C23 H42 sing N N 152 DH7 C23 H43 sing N N 153 DH7 C25 C30 sing N N 154 DH7 C30 H44 sing N N 155 DH7 C30 H45 sing N N 156 DH7 C30 H46 sing N N 157 GLN N CA sing N N 158 GLN N H sing N N 159 GLN N H2 sing N N 160 GLN CA C sing N N 161 GLN CA CB sing N N 162 GLN CA HA sing N N 163 GLN C O doub N N 164 GLN C OXT sing N N 165 GLN CB CG sing N N 166 GLN CB HB2 sing N N 167 GLN CB HB3 sing N N 168 GLN CG CD sing N N 169 GLN CG HG2 sing N N 170 GLN CG HG3 sing N N 171 GLN CD OE1 doub N N 172 GLN CD NE2 sing N N 173 GLN NE2 HE21 sing N N 174 GLN NE2 HE22 sing N N 175 GLN OXT HXT sing N N 176 GLU N CA sing N N 177 GLU N H sing N N 178 GLU N H2 sing N N 179 GLU CA C sing N N 180 GLU CA CB sing N N 181 GLU CA HA sing N N 182 GLU C O doub N N 183 GLU C OXT sing N N 184 GLU CB CG sing N N 185 GLU CB HB2 sing N N 186 GLU CB HB3 sing N N 187 GLU CG CD sing N N 188 GLU CG HG2 sing N N 189 GLU CG HG3 sing N N 190 GLU CD OE1 doub N N 191 GLU CD OE2 sing N N 192 GLU OE2 HE2 sing N N 193 GLU OXT HXT sing N N 194 GLY N CA sing N N 195 GLY N H sing N N 196 GLY N H2 sing N N 197 GLY CA C sing N N 198 GLY CA HA2 sing N N 199 GLY CA HA3 sing N N 200 GLY C O doub N N 201 GLY C OXT sing N N 202 GLY OXT HXT sing N N 203 HIS N CA sing N N 204 HIS N H sing N N 205 HIS N H2 sing N N 206 HIS CA C sing N N 207 HIS CA CB sing N N 208 HIS CA HA sing N N 209 HIS C O doub N N 210 HIS C OXT sing N N 211 HIS CB CG sing N N 212 HIS CB HB2 sing N N 213 HIS CB HB3 sing N N 214 HIS CG ND1 sing Y N 215 HIS CG CD2 doub Y N 216 HIS ND1 CE1 doub Y N 217 HIS ND1 HD1 sing N N 218 HIS CD2 NE2 sing Y N 219 HIS CD2 HD2 sing N N 220 HIS CE1 NE2 sing Y N 221 HIS CE1 HE1 sing N N 222 HIS NE2 HE2 sing N N 223 HIS OXT HXT sing N N 224 ILE N CA sing N N 225 ILE N H sing N N 226 ILE N H2 sing N N 227 ILE CA C sing N N 228 ILE CA CB sing N N 229 ILE CA HA sing N N 230 ILE C O doub N N 231 ILE C OXT sing N N 232 ILE CB CG1 sing N N 233 ILE CB CG2 sing N N 234 ILE CB HB sing N N 235 ILE CG1 CD1 sing N N 236 ILE CG1 HG12 sing N N 237 ILE CG1 HG13 sing N N 238 ILE CG2 HG21 sing N N 239 ILE CG2 HG22 sing N N 240 ILE CG2 HG23 sing N N 241 ILE CD1 HD11 sing N N 242 ILE CD1 HD12 sing N N 243 ILE CD1 HD13 sing N N 244 ILE OXT HXT sing N N 245 LEU N CA sing N N 246 LEU N H sing N N 247 LEU N H2 sing N N 248 LEU CA C sing N N 249 LEU CA CB sing N N 250 LEU CA HA sing N N 251 LEU C O doub N N 252 LEU C OXT sing N N 253 LEU CB CG sing N N 254 LEU CB HB2 sing N N 255 LEU CB HB3 sing N N 256 LEU CG CD1 sing N N 257 LEU CG CD2 sing N N 258 LEU CG HG sing N N 259 LEU CD1 HD11 sing N N 260 LEU CD1 HD12 sing N N 261 LEU CD1 HD13 sing N N 262 LEU CD2 HD21 sing N N 263 LEU CD2 HD22 sing N N 264 LEU CD2 HD23 sing N N 265 LEU OXT HXT sing N N 266 LYS N CA sing N N 267 LYS N H sing N N 268 LYS N H2 sing N N 269 LYS CA C sing N N 270 LYS CA CB sing N N 271 LYS CA HA sing N N 272 LYS C O doub N N 273 LYS C OXT sing N N 274 LYS CB CG sing N N 275 LYS CB HB2 sing N N 276 LYS CB HB3 sing N N 277 LYS CG CD sing N N 278 LYS CG HG2 sing N N 279 LYS CG HG3 sing N N 280 LYS CD CE sing N N 281 LYS CD HD2 sing N N 282 LYS CD HD3 sing N N 283 LYS CE NZ sing N N 284 LYS CE HE2 sing N N 285 LYS CE HE3 sing N N 286 LYS NZ HZ1 sing N N 287 LYS NZ HZ2 sing N N 288 LYS NZ HZ3 sing N N 289 LYS OXT HXT sing N N 290 MET N CA sing N N 291 MET N H sing N N 292 MET N H2 sing N N 293 MET CA C sing N N 294 MET CA CB sing N N 295 MET CA HA sing N N 296 MET C O doub N N 297 MET C OXT sing N N 298 MET CB CG sing N N 299 MET CB HB2 sing N N 300 MET CB HB3 sing N N 301 MET CG SD sing N N 302 MET CG HG2 sing N N 303 MET CG HG3 sing N N 304 MET SD CE sing N N 305 MET CE HE1 sing N N 306 MET CE HE2 sing N N 307 MET CE HE3 sing N N 308 MET OXT HXT sing N N 309 PHE N CA sing N N 310 PHE N H sing N N 311 PHE N H2 sing N N 312 PHE CA C sing N N 313 PHE CA CB sing N N 314 PHE CA HA sing N N 315 PHE C O doub N N 316 PHE C OXT sing N N 317 PHE CB CG sing N N 318 PHE CB HB2 sing N N 319 PHE CB HB3 sing N N 320 PHE CG CD1 doub Y N 321 PHE CG CD2 sing Y N 322 PHE CD1 CE1 sing Y N 323 PHE CD1 HD1 sing N N 324 PHE CD2 CE2 doub Y N 325 PHE CD2 HD2 sing N N 326 PHE CE1 CZ doub Y N 327 PHE CE1 HE1 sing N N 328 PHE CE2 CZ sing Y N 329 PHE CE2 HE2 sing N N 330 PHE CZ HZ sing N N 331 PHE OXT HXT sing N N 332 PRO N CA sing N N 333 PRO N CD sing N N 334 PRO N H sing N N 335 PRO CA C sing N N 336 PRO CA CB sing N N 337 PRO CA HA sing N N 338 PRO C O doub N N 339 PRO C OXT sing N N 340 PRO CB CG sing N N 341 PRO CB HB2 sing N N 342 PRO CB HB3 sing N N 343 PRO CG CD sing N N 344 PRO CG HG2 sing N N 345 PRO CG HG3 sing N N 346 PRO CD HD2 sing N N 347 PRO CD HD3 sing N N 348 PRO OXT HXT sing N N 349 SER N CA sing N N 350 SER N H sing N N 351 SER N H2 sing N N 352 SER CA C sing N N 353 SER CA CB sing N N 354 SER CA HA sing N N 355 SER C O doub N N 356 SER C OXT sing N N 357 SER CB OG sing N N 358 SER CB HB2 sing N N 359 SER CB HB3 sing N N 360 SER OG HG sing N N 361 SER OXT HXT sing N N 362 THR N CA sing N N 363 THR N H sing N N 364 THR N H2 sing N N 365 THR CA C sing N N 366 THR CA CB sing N N 367 THR CA HA sing N N 368 THR C O doub N N 369 THR C OXT sing N N 370 THR CB OG1 sing N N 371 THR CB CG2 sing N N 372 THR CB HB sing N N 373 THR OG1 HG1 sing N N 374 THR CG2 HG21 sing N N 375 THR CG2 HG22 sing N N 376 THR CG2 HG23 sing N N 377 THR OXT HXT sing N N 378 TRP N CA sing N N 379 TRP N H sing N N 380 TRP N H2 sing N N 381 TRP CA C sing N N 382 TRP CA CB sing N N 383 TRP CA HA sing N N 384 TRP C O doub N N 385 TRP C OXT sing N N 386 TRP CB CG sing N N 387 TRP CB HB2 sing N N 388 TRP CB HB3 sing N N 389 TRP CG CD1 doub Y N 390 TRP CG CD2 sing Y N 391 TRP CD1 NE1 sing Y N 392 TRP CD1 HD1 sing N N 393 TRP CD2 CE2 doub Y N 394 TRP CD2 CE3 sing Y N 395 TRP NE1 CE2 sing Y N 396 TRP NE1 HE1 sing N N 397 TRP CE2 CZ2 sing Y N 398 TRP CE3 CZ3 doub Y N 399 TRP CE3 HE3 sing N N 400 TRP CZ2 CH2 doub Y N 401 TRP CZ2 HZ2 sing N N 402 TRP CZ3 CH2 sing Y N 403 TRP CZ3 HZ3 sing N N 404 TRP CH2 HH2 sing N N 405 TRP OXT HXT sing N N 406 TYR N CA sing N N 407 TYR N H sing N N 408 TYR N H2 sing N N 409 TYR CA C sing N N 410 TYR CA CB sing N N 411 TYR CA HA sing N N 412 TYR C O doub N N 413 TYR C OXT sing N N 414 TYR CB CG sing N N 415 TYR CB HB2 sing N N 416 TYR CB HB3 sing N N 417 TYR CG CD1 doub Y N 418 TYR CG CD2 sing Y N 419 TYR CD1 CE1 sing Y N 420 TYR CD1 HD1 sing N N 421 TYR CD2 CE2 doub Y N 422 TYR CD2 HD2 sing N N 423 TYR CE1 CZ doub Y N 424 TYR CE1 HE1 sing N N 425 TYR CE2 CZ sing Y N 426 TYR CE2 HE2 sing N N 427 TYR CZ OH sing N N 428 TYR OH HH sing N N 429 TYR OXT HXT sing N N 430 VAL N CA sing N N 431 VAL N H sing N N 432 VAL N H2 sing N N 433 VAL CA C sing N N 434 VAL CA CB sing N N 435 VAL CA HA sing N N 436 VAL C O doub N N 437 VAL C OXT sing N N 438 VAL CB CG1 sing N N 439 VAL CB CG2 sing N N 440 VAL CB HB sing N N 441 VAL CG1 HG11 sing N N 442 VAL CG1 HG12 sing N N 443 VAL CG1 HG13 sing N N 444 VAL CG2 HG21 sing N N 445 VAL CG2 HG22 sing N N 446 VAL CG2 HG23 sing N N 447 VAL OXT HXT sing N N 448 # _atom_sites.entry_id 3NRI _atom_sites.fract_transf_matrix[1][1] 0.012409 _atom_sites.fract_transf_matrix[1][2] 0.007164 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014329 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011066 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_