HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-10 3NRT TITLE THE CRYSTAL STRUCTURE OF PUTATIVE RYANODINE RECEPTOR FROM BACTEROIDES TITLE 2 THETAIOTAOMICRON VPI-5482 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE RYANODINE RECEPTOR; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 STRAIN: VPI-5482; SOURCE 5 GENE: BT_2247; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDM68 KEYWDS PSI-2, PROTEIN STRUCTURE INITIATIVE, STRUCTURAL GENOMICS, MIDWEST KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS (MCSG), UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.WU,R.ZHANG,A.JAMES,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 27-DEC-23 3NRT 1 REMARK REVDAT 2 09-SEP-20 3NRT 1 TITLE REMARK LINK REVDAT 1 15-SEP-10 3NRT 0 JRNL AUTH W.RUIYING,Z.RONGGUANG,A.JAMES,J.ANDRZEJ, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL HE CRYSTAL STRUCUTRE OF PUTATIVE RYANODINE RECEPTOR FROM JRNL TITL 2 BACTEROIDES THETAIOTAOMICRON VPI-5482 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 61648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.4829 - 5.3300 0.94 5673 319 0.1977 0.2171 REMARK 3 2 5.3300 - 4.2335 0.95 5785 325 0.1602 0.2057 REMARK 3 3 4.2335 - 3.6992 0.98 5927 332 0.1653 0.2312 REMARK 3 4 3.6992 - 3.3614 0.99 6033 337 0.1784 0.2360 REMARK 3 5 3.3614 - 3.1207 0.99 5984 298 0.1923 0.2649 REMARK 3 6 3.1207 - 2.9368 0.99 6108 318 0.1997 0.2743 REMARK 3 7 2.9368 - 2.7898 0.99 5923 348 0.2441 0.2940 REMARK 3 8 2.7898 - 2.6684 0.99 6034 271 0.2475 0.3181 REMARK 3 9 2.6684 - 2.5657 0.98 6007 291 0.2384 0.3031 REMARK 3 10 2.5657 - 2.4772 0.84 5046 289 0.2593 0.3017 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 44.55 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75530 REMARK 3 B22 (A**2) : 7.88900 REMARK 3 B33 (A**2) : -5.13370 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.24240 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4875 REMARK 3 ANGLE : 1.129 6570 REMARK 3 CHIRALITY : 0.072 693 REMARK 3 PLANARITY : 0.005 852 REMARK 3 DIHEDRAL : 20.146 1903 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A RESID 7:100 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9914 -1.7027 33.3547 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.1107 REMARK 3 T33: 0.2001 T12: -0.0022 REMARK 3 T13: -0.0102 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.3204 L22: 0.3631 REMARK 3 L33: 1.2098 L12: -0.4423 REMARK 3 L13: -0.0619 L23: -0.0537 REMARK 3 S TENSOR REMARK 3 S11: 0.0088 S12: -0.1505 S13: 0.0497 REMARK 3 S21: 0.0293 S22: -0.0157 S23: -0.0564 REMARK 3 S31: 0.0438 S32: 0.0478 S33: 0.0074 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B RESID 7:100 REMARK 3 ORIGIN FOR THE GROUP (A): -8.3802 -4.3169 26.4335 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.1339 REMARK 3 T33: 0.1241 T12: 0.0276 REMARK 3 T13: 0.0191 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.4484 L22: 0.1264 REMARK 3 L33: 1.5533 L12: -0.1037 REMARK 3 L13: -0.2326 L23: -0.2146 REMARK 3 S TENSOR REMARK 3 S11: -0.0335 S12: 0.1751 S13: 0.0240 REMARK 3 S21: -0.0730 S22: -0.0078 S23: -0.0015 REMARK 3 S31: -0.0198 S32: -0.1522 S33: 0.0460 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C RESID 7:100 REMARK 3 ORIGIN FOR THE GROUP (A): -8.5263 -12.2126 1.8866 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.1872 REMARK 3 T33: 0.1498 T12: -0.0526 REMARK 3 T13: 0.0288 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 1.2777 L22: 0.5394 REMARK 3 L33: 1.8138 L12: -0.0379 REMARK 3 L13: 0.2314 L23: -0.9816 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.1308 S13: -0.1461 REMARK 3 S21: -0.0723 S22: 0.1080 S23: -0.0641 REMARK 3 S31: 0.3428 S32: -0.1453 S33: -0.0595 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D RESID 7:100 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7014 -11.1334 -6.0981 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.2095 REMARK 3 T33: 0.1809 T12: -0.0001 REMARK 3 T13: -0.0155 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.8132 L22: 0.6711 REMARK 3 L33: 2.2378 L12: 0.4187 REMARK 3 L13: -0.2399 L23: -0.8144 REMARK 3 S TENSOR REMARK 3 S11: 0.0549 S12: -0.2118 S13: -0.2386 REMARK 3 S21: -0.1451 S22: -0.1403 S23: 0.0150 REMARK 3 S31: 0.1252 S32: 0.1632 S33: 0.0462 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN E RESID 7:100 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1247 6.2605 42.1792 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.1250 REMARK 3 T33: 0.2505 T12: -0.0500 REMARK 3 T13: -0.0302 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 1.7526 L22: 0.2776 REMARK 3 L33: 1.4461 L12: -0.6530 REMARK 3 L13: 1.0618 L23: -0.5501 REMARK 3 S TENSOR REMARK 3 S11: -0.1617 S12: -0.0582 S13: 0.3649 REMARK 3 S21: 0.0051 S22: 0.0922 S23: -0.1282 REMARK 3 S31: -0.1359 S32: 0.1599 S33: 0.1001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN F RESID 7:100 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6903 4.9406 47.1691 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.1777 REMARK 3 T33: 0.1328 T12: -0.0025 REMARK 3 T13: -0.0035 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 2.3791 L22: 0.3031 REMARK 3 L33: 1.0721 L12: -0.5117 REMARK 3 L13: 0.5025 L23: 0.2315 REMARK 3 S TENSOR REMARK 3 S11: 0.0785 S12: 0.2084 S13: 0.1554 REMARK 3 S21: 0.0877 S22: -0.1278 S23: -0.1244 REMARK 3 S31: -0.2278 S32: -0.0762 S33: 0.0435 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NRT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SI 111, CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.540 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.64300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 400, 0.2M MGCL, , PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.63600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 ASP A 100 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 LYS B 2 REMARK 465 GLU B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 LEU B 6 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 LYS D 2 REMARK 465 GLU D 3 REMARK 465 ASN D 4 REMARK 465 LYS D 5 REMARK 465 LEU D 6 REMARK 465 ASP D 100 REMARK 465 SER E -2 REMARK 465 ASN E -1 REMARK 465 ALA E 0 REMARK 465 MSE E 1 REMARK 465 LYS E 2 REMARK 465 SER F -2 REMARK 465 ASN F -1 REMARK 465 ALA F 0 REMARK 465 MSE F 1 REMARK 465 LYS F 2 REMARK 465 GLU F 3 REMARK 465 ASN F 4 REMARK 465 LYS F 5 REMARK 465 LEU F 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 2 CG CD CE NZ REMARK 470 GLU C 3 CG CD OE1 OE2 REMARK 470 ASN C 4 CG OD1 ND2 REMARK 470 GLU E 3 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 11 CD REMARK 480 ASP A 19 CG REMARK 480 GLU A 73 CD REMARK 480 GLU B 11 CD REMARK 480 GLU B 73 CD REMARK 480 GLU C 11 CD REMARK 480 GLU C 73 CD REMARK 480 GLU D 11 CD REMARK 480 GLU D 73 CD REMARK 480 GLU E 11 CD REMARK 480 GLU E 73 CD REMARK 480 GLU F 11 CD REMARK 480 GLU F 73 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 55 108.95 -160.94 REMARK 500 ASP C 7 60.45 -114.89 REMARK 500 ASP D 45 22.53 -76.96 REMARK 500 LYS D 59 73.29 45.84 REMARK 500 PRO D 62 0.75 -69.76 REMARK 500 ASP E 7 67.19 -116.08 REMARK 500 GLU E 46 32.46 -96.41 REMARK 500 LYS E 59 62.99 61.70 REMARK 500 ALA F 42 -71.20 -47.40 REMARK 500 ASP F 45 25.92 -71.61 REMARK 500 GLU F 46 35.94 -148.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD2 REMARK 620 2 ASP B 56 OD2 144.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL F 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC81718 RELATED DB: TARGETDB DBREF 3NRT A 1 100 UNP Q8A5J2 Q8A5J2_BACTN 1 100 DBREF 3NRT B 1 100 UNP Q8A5J2 Q8A5J2_BACTN 1 100 DBREF 3NRT C 1 100 UNP Q8A5J2 Q8A5J2_BACTN 1 100 DBREF 3NRT D 1 100 UNP Q8A5J2 Q8A5J2_BACTN 1 100 DBREF 3NRT E 1 100 UNP Q8A5J2 Q8A5J2_BACTN 1 100 DBREF 3NRT F 1 100 UNP Q8A5J2 Q8A5J2_BACTN 1 100 SEQADV 3NRT SER A -2 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ASN A -1 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ALA A 0 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT SER B -2 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ASN B -1 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ALA B 0 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT SER C -2 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ASN C -1 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ALA C 0 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT SER D -2 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ASN D -1 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ALA D 0 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT SER E -2 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ASN E -1 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ALA E 0 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT SER F -2 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ASN F -1 UNP Q8A5J2 EXPRESSION TAG SEQADV 3NRT ALA F 0 UNP Q8A5J2 EXPRESSION TAG SEQRES 1 A 103 SER ASN ALA MSE LYS GLU ASN LYS LEU ASP TYR ILE PRO SEQRES 2 A 103 GLU PRO MSE ASP LEU SER LEU VAL ASP LEU PRO GLU SER SEQRES 3 A 103 LEU ILE GLN LEU SER GLU ARG ILE ALA GLU ASN VAL HIS SEQRES 4 A 103 GLU VAL TRP ALA LYS ALA ARG ILE ASP GLU GLY TRP THR SEQRES 5 A 103 TYR GLY GLU LYS ARG ASP ASP ILE HIS LYS LYS HIS PRO SEQRES 6 A 103 CYS LEU VAL PRO TYR ASP GLU LEU PRO GLU GLU GLU LYS SEQRES 7 A 103 GLU TYR ASP ARG ASN THR ALA MSE ASN THR ILE LYS MSE SEQRES 8 A 103 VAL LYS LYS LEU GLY PHE ARG ILE GLU LYS GLU ASP SEQRES 1 B 103 SER ASN ALA MSE LYS GLU ASN LYS LEU ASP TYR ILE PRO SEQRES 2 B 103 GLU PRO MSE ASP LEU SER LEU VAL ASP LEU PRO GLU SER SEQRES 3 B 103 LEU ILE GLN LEU SER GLU ARG ILE ALA GLU ASN VAL HIS SEQRES 4 B 103 GLU VAL TRP ALA LYS ALA ARG ILE ASP GLU GLY TRP THR SEQRES 5 B 103 TYR GLY GLU LYS ARG ASP ASP ILE HIS LYS LYS HIS PRO SEQRES 6 B 103 CYS LEU VAL PRO TYR ASP GLU LEU PRO GLU GLU GLU LYS SEQRES 7 B 103 GLU TYR ASP ARG ASN THR ALA MSE ASN THR ILE LYS MSE SEQRES 8 B 103 VAL LYS LYS LEU GLY PHE ARG ILE GLU LYS GLU ASP SEQRES 1 C 103 SER ASN ALA MSE LYS GLU ASN LYS LEU ASP TYR ILE PRO SEQRES 2 C 103 GLU PRO MSE ASP LEU SER LEU VAL ASP LEU PRO GLU SER SEQRES 3 C 103 LEU ILE GLN LEU SER GLU ARG ILE ALA GLU ASN VAL HIS SEQRES 4 C 103 GLU VAL TRP ALA LYS ALA ARG ILE ASP GLU GLY TRP THR SEQRES 5 C 103 TYR GLY GLU LYS ARG ASP ASP ILE HIS LYS LYS HIS PRO SEQRES 6 C 103 CYS LEU VAL PRO TYR ASP GLU LEU PRO GLU GLU GLU LYS SEQRES 7 C 103 GLU TYR ASP ARG ASN THR ALA MSE ASN THR ILE LYS MSE SEQRES 8 C 103 VAL LYS LYS LEU GLY PHE ARG ILE GLU LYS GLU ASP SEQRES 1 D 103 SER ASN ALA MSE LYS GLU ASN LYS LEU ASP TYR ILE PRO SEQRES 2 D 103 GLU PRO MSE ASP LEU SER LEU VAL ASP LEU PRO GLU SER SEQRES 3 D 103 LEU ILE GLN LEU SER GLU ARG ILE ALA GLU ASN VAL HIS SEQRES 4 D 103 GLU VAL TRP ALA LYS ALA ARG ILE ASP GLU GLY TRP THR SEQRES 5 D 103 TYR GLY GLU LYS ARG ASP ASP ILE HIS LYS LYS HIS PRO SEQRES 6 D 103 CYS LEU VAL PRO TYR ASP GLU LEU PRO GLU GLU GLU LYS SEQRES 7 D 103 GLU TYR ASP ARG ASN THR ALA MSE ASN THR ILE LYS MSE SEQRES 8 D 103 VAL LYS LYS LEU GLY PHE ARG ILE GLU LYS GLU ASP SEQRES 1 E 103 SER ASN ALA MSE LYS GLU ASN LYS LEU ASP TYR ILE PRO SEQRES 2 E 103 GLU PRO MSE ASP LEU SER LEU VAL ASP LEU PRO GLU SER SEQRES 3 E 103 LEU ILE GLN LEU SER GLU ARG ILE ALA GLU ASN VAL HIS SEQRES 4 E 103 GLU VAL TRP ALA LYS ALA ARG ILE ASP GLU GLY TRP THR SEQRES 5 E 103 TYR GLY GLU LYS ARG ASP ASP ILE HIS LYS LYS HIS PRO SEQRES 6 E 103 CYS LEU VAL PRO TYR ASP GLU LEU PRO GLU GLU GLU LYS SEQRES 7 E 103 GLU TYR ASP ARG ASN THR ALA MSE ASN THR ILE LYS MSE SEQRES 8 E 103 VAL LYS LYS LEU GLY PHE ARG ILE GLU LYS GLU ASP SEQRES 1 F 103 SER ASN ALA MSE LYS GLU ASN LYS LEU ASP TYR ILE PRO SEQRES 2 F 103 GLU PRO MSE ASP LEU SER LEU VAL ASP LEU PRO GLU SER SEQRES 3 F 103 LEU ILE GLN LEU SER GLU ARG ILE ALA GLU ASN VAL HIS SEQRES 4 F 103 GLU VAL TRP ALA LYS ALA ARG ILE ASP GLU GLY TRP THR SEQRES 5 F 103 TYR GLY GLU LYS ARG ASP ASP ILE HIS LYS LYS HIS PRO SEQRES 6 F 103 CYS LEU VAL PRO TYR ASP GLU LEU PRO GLU GLU GLU LYS SEQRES 7 F 103 GLU TYR ASP ARG ASN THR ALA MSE ASN THR ILE LYS MSE SEQRES 8 F 103 VAL LYS LYS LEU GLY PHE ARG ILE GLU LYS GLU ASP MODRES 3NRT MSE A 13 MET SELENOMETHIONINE MODRES 3NRT MSE A 83 MET SELENOMETHIONINE MODRES 3NRT MSE A 88 MET SELENOMETHIONINE MODRES 3NRT MSE B 13 MET SELENOMETHIONINE MODRES 3NRT MSE B 83 MET SELENOMETHIONINE MODRES 3NRT MSE B 88 MET SELENOMETHIONINE MODRES 3NRT MSE C 13 MET SELENOMETHIONINE MODRES 3NRT MSE C 83 MET SELENOMETHIONINE MODRES 3NRT MSE C 88 MET SELENOMETHIONINE MODRES 3NRT MSE D 13 MET SELENOMETHIONINE MODRES 3NRT MSE D 83 MET SELENOMETHIONINE MODRES 3NRT MSE D 88 MET SELENOMETHIONINE MODRES 3NRT MSE E 13 MET SELENOMETHIONINE MODRES 3NRT MSE E 83 MET SELENOMETHIONINE MODRES 3NRT MSE E 88 MET SELENOMETHIONINE MODRES 3NRT MSE F 13 MET SELENOMETHIONINE MODRES 3NRT MSE F 83 MET SELENOMETHIONINE MODRES 3NRT MSE F 88 MET SELENOMETHIONINE HET MSE A 13 8 HET MSE A 83 8 HET MSE A 88 8 HET MSE B 13 8 HET MSE B 83 8 HET MSE B 88 8 HET MSE C 13 8 HET MSE C 83 8 HET MSE C 88 8 HET MSE D 13 8 HET MSE D 83 8 HET MSE D 88 8 HET MSE E 13 8 HET MSE E 83 8 HET MSE E 88 8 HET MSE F 13 8 HET MSE F 83 8 HET MSE F 88 8 HET GOL A 101 6 HET MG A 102 1 HET GOL A 103 6 HET GOL B 101 6 HET GOL C 101 6 HET GOL D 101 6 HET GOL E 101 6 HET GOL F 101 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 18(C5 H11 N O2 SE) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 8 MG MG 2+ FORMUL 15 HOH *85(H2 O) HELIX 1 1 PRO A 21 GLN A 26 1 6 HELIX 2 2 LEU A 27 GLU A 46 1 20 HELIX 3 3 PRO A 66 LEU A 70 5 5 HELIX 4 4 PRO A 71 LEU A 92 1 22 HELIX 5 5 PRO B 21 GLN B 26 1 6 HELIX 6 6 LEU B 27 GLU B 46 1 20 HELIX 7 7 PRO B 66 LEU B 70 5 5 HELIX 8 8 PRO B 71 LEU B 92 1 22 HELIX 9 9 PRO C 21 GLN C 26 1 6 HELIX 10 10 LEU C 27 ASP C 45 1 19 HELIX 11 11 PRO C 66 LEU C 70 5 5 HELIX 12 12 PRO C 71 LEU C 92 1 22 HELIX 13 13 PRO D 21 GLN D 26 1 6 HELIX 14 14 LEU D 27 ASP D 45 1 19 HELIX 15 15 PRO D 66 LEU D 70 5 5 HELIX 16 16 PRO D 71 LEU D 92 1 22 HELIX 17 17 PRO E 21 GLN E 26 1 6 HELIX 18 18 LEU E 27 ASP E 45 1 19 HELIX 19 19 PRO E 66 LEU E 70 5 5 HELIX 20 20 PRO E 71 LEU E 92 1 22 HELIX 21 21 PRO F 21 GLN F 26 1 6 HELIX 22 22 LEU F 27 ASP F 45 1 19 HELIX 23 23 PRO F 66 LEU F 70 5 5 HELIX 24 24 PRO F 71 LEU F 92 1 22 SHEET 1 A 2 THR A 49 TYR A 50 0 SHEET 2 A 2 LYS A 60 HIS A 61 1 O HIS A 61 N THR A 49 SHEET 1 B 2 PHE A 94 LYS A 98 0 SHEET 2 B 2 PHE B 94 LYS B 98 -1 O ARG B 95 N GLU A 97 SHEET 1 C 2 THR B 49 TYR B 50 0 SHEET 2 C 2 LYS B 60 HIS B 61 1 O HIS B 61 N THR B 49 SHEET 1 D 2 PHE C 94 LYS C 98 0 SHEET 2 D 2 PHE D 94 LYS D 98 -1 O ARG D 95 N GLU C 97 SHEET 1 E 2 THR D 49 TYR D 50 0 SHEET 2 E 2 LYS D 60 HIS D 61 1 O HIS D 61 N THR D 49 SHEET 1 F 2 THR E 49 TYR E 50 0 SHEET 2 F 2 LYS E 60 HIS E 61 1 O HIS E 61 N THR E 49 SHEET 1 G 2 PHE E 94 LYS E 98 0 SHEET 2 G 2 PHE F 94 LYS F 98 -1 O ARG F 95 N GLU E 97 LINK C PRO A 12 N MSE A 13 1555 1555 1.33 LINK C MSE A 13 N ASP A 14 1555 1555 1.33 LINK C ALA A 82 N MSE A 83 1555 1555 1.34 LINK C MSE A 83 N ASN A 84 1555 1555 1.33 LINK C LYS A 87 N MSE A 88 1555 1555 1.32 LINK C MSE A 88 N VAL A 89 1555 1555 1.34 LINK C PRO B 12 N MSE B 13 1555 1555 1.33 LINK C MSE B 13 N ASP B 14 1555 1555 1.33 LINK C ALA B 82 N MSE B 83 1555 1555 1.34 LINK C MSE B 83 N ASN B 84 1555 1555 1.33 LINK C LYS B 87 N MSE B 88 1555 1555 1.32 LINK C MSE B 88 N VAL B 89 1555 1555 1.33 LINK C PRO C 12 N MSE C 13 1555 1555 1.33 LINK C MSE C 13 N ASP C 14 1555 1555 1.32 LINK C ALA C 82 N MSE C 83 1555 1555 1.33 LINK C MSE C 83 N ASN C 84 1555 1555 1.34 LINK C LYS C 87 N MSE C 88 1555 1555 1.33 LINK C MSE C 88 N VAL C 89 1555 1555 1.34 LINK C PRO D 12 N MSE D 13 1555 1555 1.32 LINK C MSE D 13 N ASP D 14 1555 1555 1.33 LINK C ALA D 82 N MSE D 83 1555 1555 1.33 LINK C MSE D 83 N ASN D 84 1555 1555 1.33 LINK C LYS D 87 N MSE D 88 1555 1555 1.33 LINK C MSE D 88 N VAL D 89 1555 1555 1.34 LINK C PRO E 12 N MSE E 13 1555 1555 1.33 LINK C MSE E 13 N ASP E 14 1555 1555 1.32 LINK C ALA E 82 N MSE E 83 1555 1555 1.33 LINK C MSE E 83 N ASN E 84 1555 1555 1.34 LINK C LYS E 87 N MSE E 88 1555 1555 1.33 LINK C MSE E 88 N VAL E 89 1555 1555 1.34 LINK C PRO F 12 N MSE F 13 1555 1555 1.32 LINK C MSE F 13 N ASP F 14 1555 1555 1.33 LINK C ALA F 82 N MSE F 83 1555 1555 1.33 LINK C MSE F 83 N ASN F 84 1555 1555 1.33 LINK C LYS F 87 N MSE F 88 1555 1555 1.34 LINK C MSE F 88 N VAL F 89 1555 1555 1.33 LINK OD2 ASP A 56 MG MG A 102 1555 1555 2.57 LINK MG MG A 102 OD2 ASP B 56 1555 1555 2.69 CISPEP 1 GLU C 3 ASN C 4 0 1.98 CISPEP 2 GLU E 3 ASN E 4 0 7.00 SITE 1 AC1 7 TRP A 39 ARG A 43 ARG A 54 HIS A 61 SITE 2 AC1 7 ARG B 43 ARG B 54 HIS B 61 SITE 1 AC2 2 ASP A 56 ASP B 56 SITE 1 AC3 4 PRO A 21 GLU A 22 SER A 23 HOH A 156 SITE 1 AC4 3 PRO B 21 GLU B 22 SER B 23 SITE 1 AC5 4 PRO C 21 GLU C 22 SER C 23 HOH C 119 SITE 1 AC6 3 PRO D 21 GLU D 22 SER D 23 SITE 1 AC7 3 PRO E 21 GLU E 22 SER E 23 SITE 1 AC8 4 PRO F 21 GLU F 22 SER F 23 HOH F 147 CRYST1 74.642 89.272 74.697 90.00 110.99 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013397 0.000000 0.005140 0.00000 SCALE2 0.000000 0.011202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014339 0.00000