HEADER TRANSCRIPTION REGULATOR 30-JUN-10 3NRV TITLE CRYSTAL STRUCTURE OF MARR/EMRR FAMILY TRANSCRIPTIONAL REGULATOR FROM TITLE 2 ACINETOBACTER SP. ADP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRANSCRIPTIONAL REGULATOR (MARR/EMRR FAMILY); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER SP. ADP1; SOURCE 3 ORGANISM_TAXID: 62977; SOURCE 4 GENE: 2878967, ACIAD1811; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PDM68 KEYWDS TRANSCRIPTIONAL REGULATOR, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 STRUCTURAL GENOMICS, MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG), KEYWDS 3 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,R.WU,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 2 (MCSG) REVDAT 3 27-DEC-23 3NRV 1 REMARK REVDAT 2 09-SEP-20 3NRV 1 JRNL REMARK SEQADV LINK REVDAT 1 15-SEP-10 3NRV 0 JRNL AUTH Z.RONGGUANG,W.RUIYING,J.ANDRZEJ, JRNL AUTH 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF MARR/EMRR FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM ACINETOBACTER SP. ADP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 53697 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5886 - 4.3086 0.98 5472 282 0.1922 0.2271 REMARK 3 2 4.3086 - 3.4211 1.00 5405 309 0.1653 0.1722 REMARK 3 3 3.4211 - 2.9890 1.00 5372 301 0.1979 0.2445 REMARK 3 4 2.9890 - 2.7158 1.00 5375 262 0.2025 0.2301 REMARK 3 5 2.7158 - 2.5213 1.00 5392 275 0.2003 0.2321 REMARK 3 6 2.5213 - 2.3727 1.00 5322 282 0.2048 0.2503 REMARK 3 7 2.3727 - 2.2539 0.99 5358 292 0.2088 0.2634 REMARK 3 8 2.2539 - 2.1558 1.00 5282 308 0.2107 0.2534 REMARK 3 9 2.1558 - 2.0728 0.99 5302 284 0.2124 0.2585 REMARK 3 10 2.0728 - 2.0013 0.98 5234 261 0.2326 0.2853 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.18 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.25540 REMARK 3 B22 (A**2) : -4.25580 REMARK 3 B33 (A**2) : -2.99960 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.22740 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4590 REMARK 3 ANGLE : 1.040 6148 REMARK 3 CHIRALITY : 0.079 700 REMARK 3 PLANARITY : 0.003 771 REMARK 3 DIHEDRAL : 17.065 1778 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A RESID 3:145 REMARK 3 ORIGIN FOR THE GROUP (A): 26.8372 29.4190 78.7363 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.1820 REMARK 3 T33: 0.1892 T12: -0.0310 REMARK 3 T13: -0.0764 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.8559 L22: 0.9545 REMARK 3 L33: 0.7639 L12: 0.0882 REMARK 3 L13: 0.5990 L23: -0.1739 REMARK 3 S TENSOR REMARK 3 S11: -0.1579 S12: 0.1587 S13: 0.0427 REMARK 3 S21: -0.2202 S22: 0.0821 S23: 0.1135 REMARK 3 S31: -0.0458 S32: 0.0634 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B RESID 2:145 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6896 26.3160 67.8488 REMARK 3 T TENSOR REMARK 3 T11: 0.1990 T22: 0.1847 REMARK 3 T33: 0.2000 T12: 0.0217 REMARK 3 T13: 0.0760 T23: 0.0206 REMARK 3 L TENSOR REMARK 3 L11: 1.2391 L22: 1.0511 REMARK 3 L33: 0.9522 L12: -0.3502 REMARK 3 L13: -0.4209 L23: -0.0353 REMARK 3 S TENSOR REMARK 3 S11: -0.1570 S12: -0.1693 S13: -0.0574 REMARK 3 S21: 0.2062 S22: 0.1120 S23: 0.1613 REMARK 3 S31: 0.0272 S32: -0.0032 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C RESID 4:145 REMARK 3 ORIGIN FOR THE GROUP (A): 38.4050 28.7512 90.2053 REMARK 3 T TENSOR REMARK 3 T11: 0.1927 T22: 0.1750 REMARK 3 T33: 0.1618 T12: 0.0322 REMARK 3 T13: 0.0057 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.8358 L22: 1.3402 REMARK 3 L33: 1.1498 L12: 0.3980 REMARK 3 L13: -0.1437 L23: -0.1966 REMARK 3 S TENSOR REMARK 3 S11: -0.1022 S12: -0.0206 S13: 0.0360 REMARK 3 S21: -0.0853 S22: 0.1046 S23: 0.0344 REMARK 3 S31: 0.0678 S32: 0.0628 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D RESID 4:145 REMARK 3 ORIGIN FOR THE GROUP (A): 1.9131 27.1178 56.4163 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.1639 REMARK 3 T33: 0.1470 T12: -0.0346 REMARK 3 T13: 0.0002 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.8062 L22: 1.4005 REMARK 3 L33: 1.2723 L12: -0.3841 REMARK 3 L13: 0.1718 L23: -0.0638 REMARK 3 S TENSOR REMARK 3 S11: -0.0963 S12: 0.0449 S13: -0.0663 REMARK 3 S21: 0.0738 S22: 0.0959 S23: 0.0336 REMARK 3 S31: -0.0537 S32: 0.0664 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : SI 111, CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-2 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53697 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.51400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5; 2M NH4SO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.78650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 SER A 25 REMARK 465 SER A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 ASN A 84 REMARK 465 GLY A 85 REMARK 465 HIS A 86 REMARK 465 SER A 87 REMARK 465 GLU A 88 REMARK 465 ASP A 89 REMARK 465 LYS A 90 REMARK 465 ARG A 91 REMARK 465 THR A 92 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MSE B 1 REMARK 465 LYS B 24 REMARK 465 SER B 25 REMARK 465 SER B 26 REMARK 465 THR B 27 REMARK 465 ALA B 28 REMARK 465 ASN B 84 REMARK 465 GLY B 85 REMARK 465 HIS B 86 REMARK 465 SER B 87 REMARK 465 GLU B 88 REMARK 465 ASP B 89 REMARK 465 LYS B 90 REMARK 465 ARG B 91 REMARK 465 THR B 92 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 ALA C 0 REMARK 465 MSE C 1 REMARK 465 GLN C 2 REMARK 465 LYS C 3 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 465 ALA D 0 REMARK 465 MSE D 1 REMARK 465 GLN D 2 REMARK 465 LYS D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 2 CG CD OE1 NE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 99 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 399 O HOH B 400 2.13 REMARK 500 O HOH A 358 O HOH A 359 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP D 51 N ASP D 51 CA -0.133 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 51 CB - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR B 30 -35.52 -130.34 REMARK 500 GLU C 88 31.70 -98.39 REMARK 500 ASP D 51 105.01 -41.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER D 50 ASP D 51 -128.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 146 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE B 33 O REMARK 620 2 TYR B 80 OH 110.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 149 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 147 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 148 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC88533 RELATED DB: TARGETDB DBREF 3NRV A 1 145 UNP Q6FBB7 Q6FBB7_ACIAD 1 145 DBREF 3NRV B 1 145 UNP Q6FBB7 Q6FBB7_ACIAD 1 145 DBREF 3NRV C 1 145 UNP Q6FBB7 Q6FBB7_ACIAD 1 145 DBREF 3NRV D 1 145 UNP Q6FBB7 Q6FBB7_ACIAD 1 145 SEQADV 3NRV SER A -2 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV ASN A -1 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV ALA A 0 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV SER B -2 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV ASN B -1 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV ALA B 0 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV SER C -2 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV ASN C -1 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV ALA C 0 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV SER D -2 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV ASN D -1 UNP Q6FBB7 EXPRESSION TAG SEQADV 3NRV ALA D 0 UNP Q6FBB7 EXPRESSION TAG SEQRES 1 A 148 SER ASN ALA MSE GLN LYS ILE ASN ILE ASP ARG HIS ALA SEQRES 2 A 148 THR ALA GLN ILE ASN MSE LEU ALA ASN LYS LEU MSE LEU SEQRES 3 A 148 LYS SER SER THR ALA TYR THR GLN LYS PHE GLY ILE GLY SEQRES 4 A 148 MSE THR GLU TRP ARG ILE ILE SER VAL LEU SER SER ALA SEQRES 5 A 148 SER ASP CYS SER VAL GLN LYS ILE SER ASP ILE LEU GLY SEQRES 6 A 148 LEU ASP LYS ALA ALA VAL SER ARG THR VAL LYS LYS LEU SEQRES 7 A 148 GLU GLU LYS LYS TYR ILE GLU VAL ASN GLY HIS SER GLU SEQRES 8 A 148 ASP LYS ARG THR TYR ALA ILE ASN LEU THR GLU MSE GLY SEQRES 9 A 148 GLN GLU LEU TYR GLU VAL ALA SER ASP PHE ALA ILE GLU SEQRES 10 A 148 ARG GLU LYS GLN LEU LEU GLU GLU PHE GLU GLU ALA GLU SEQRES 11 A 148 LYS ASP GLN LEU PHE ILE LEU LEU LYS LYS LEU ARG ASN SEQRES 12 A 148 LYS VAL ASP GLN MSE SEQRES 1 B 148 SER ASN ALA MSE GLN LYS ILE ASN ILE ASP ARG HIS ALA SEQRES 2 B 148 THR ALA GLN ILE ASN MSE LEU ALA ASN LYS LEU MSE LEU SEQRES 3 B 148 LYS SER SER THR ALA TYR THR GLN LYS PHE GLY ILE GLY SEQRES 4 B 148 MSE THR GLU TRP ARG ILE ILE SER VAL LEU SER SER ALA SEQRES 5 B 148 SER ASP CYS SER VAL GLN LYS ILE SER ASP ILE LEU GLY SEQRES 6 B 148 LEU ASP LYS ALA ALA VAL SER ARG THR VAL LYS LYS LEU SEQRES 7 B 148 GLU GLU LYS LYS TYR ILE GLU VAL ASN GLY HIS SER GLU SEQRES 8 B 148 ASP LYS ARG THR TYR ALA ILE ASN LEU THR GLU MSE GLY SEQRES 9 B 148 GLN GLU LEU TYR GLU VAL ALA SER ASP PHE ALA ILE GLU SEQRES 10 B 148 ARG GLU LYS GLN LEU LEU GLU GLU PHE GLU GLU ALA GLU SEQRES 11 B 148 LYS ASP GLN LEU PHE ILE LEU LEU LYS LYS LEU ARG ASN SEQRES 12 B 148 LYS VAL ASP GLN MSE SEQRES 1 C 148 SER ASN ALA MSE GLN LYS ILE ASN ILE ASP ARG HIS ALA SEQRES 2 C 148 THR ALA GLN ILE ASN MSE LEU ALA ASN LYS LEU MSE LEU SEQRES 3 C 148 LYS SER SER THR ALA TYR THR GLN LYS PHE GLY ILE GLY SEQRES 4 C 148 MSE THR GLU TRP ARG ILE ILE SER VAL LEU SER SER ALA SEQRES 5 C 148 SER ASP CYS SER VAL GLN LYS ILE SER ASP ILE LEU GLY SEQRES 6 C 148 LEU ASP LYS ALA ALA VAL SER ARG THR VAL LYS LYS LEU SEQRES 7 C 148 GLU GLU LYS LYS TYR ILE GLU VAL ASN GLY HIS SER GLU SEQRES 8 C 148 ASP LYS ARG THR TYR ALA ILE ASN LEU THR GLU MSE GLY SEQRES 9 C 148 GLN GLU LEU TYR GLU VAL ALA SER ASP PHE ALA ILE GLU SEQRES 10 C 148 ARG GLU LYS GLN LEU LEU GLU GLU PHE GLU GLU ALA GLU SEQRES 11 C 148 LYS ASP GLN LEU PHE ILE LEU LEU LYS LYS LEU ARG ASN SEQRES 12 C 148 LYS VAL ASP GLN MSE SEQRES 1 D 148 SER ASN ALA MSE GLN LYS ILE ASN ILE ASP ARG HIS ALA SEQRES 2 D 148 THR ALA GLN ILE ASN MSE LEU ALA ASN LYS LEU MSE LEU SEQRES 3 D 148 LYS SER SER THR ALA TYR THR GLN LYS PHE GLY ILE GLY SEQRES 4 D 148 MSE THR GLU TRP ARG ILE ILE SER VAL LEU SER SER ALA SEQRES 5 D 148 SER ASP CYS SER VAL GLN LYS ILE SER ASP ILE LEU GLY SEQRES 6 D 148 LEU ASP LYS ALA ALA VAL SER ARG THR VAL LYS LYS LEU SEQRES 7 D 148 GLU GLU LYS LYS TYR ILE GLU VAL ASN GLY HIS SER GLU SEQRES 8 D 148 ASP LYS ARG THR TYR ALA ILE ASN LEU THR GLU MSE GLY SEQRES 9 D 148 GLN GLU LEU TYR GLU VAL ALA SER ASP PHE ALA ILE GLU SEQRES 10 D 148 ARG GLU LYS GLN LEU LEU GLU GLU PHE GLU GLU ALA GLU SEQRES 11 D 148 LYS ASP GLN LEU PHE ILE LEU LEU LYS LYS LEU ARG ASN SEQRES 12 D 148 LYS VAL ASP GLN MSE MODRES 3NRV MSE A 16 MET SELENOMETHIONINE MODRES 3NRV MSE A 22 MET SELENOMETHIONINE MODRES 3NRV MSE A 37 MET SELENOMETHIONINE MODRES 3NRV MSE A 100 MET SELENOMETHIONINE MODRES 3NRV MSE A 145 MET SELENOMETHIONINE MODRES 3NRV MSE B 16 MET SELENOMETHIONINE MODRES 3NRV MSE B 22 MET SELENOMETHIONINE MODRES 3NRV MSE B 37 MET SELENOMETHIONINE MODRES 3NRV MSE B 100 MET SELENOMETHIONINE MODRES 3NRV MSE B 145 MET SELENOMETHIONINE MODRES 3NRV MSE C 16 MET SELENOMETHIONINE MODRES 3NRV MSE C 22 MET SELENOMETHIONINE MODRES 3NRV MSE C 37 MET SELENOMETHIONINE MODRES 3NRV MSE C 100 MET SELENOMETHIONINE MODRES 3NRV MSE C 145 MET SELENOMETHIONINE MODRES 3NRV MSE D 16 MET SELENOMETHIONINE MODRES 3NRV MSE D 22 MET SELENOMETHIONINE MODRES 3NRV MSE D 37 MET SELENOMETHIONINE MODRES 3NRV MSE D 100 MET SELENOMETHIONINE MODRES 3NRV MSE D 145 MET SELENOMETHIONINE HET MSE A 16 16 HET MSE A 22 8 HET MSE A 37 8 HET MSE A 100 8 HET MSE A 145 8 HET MSE B 16 16 HET MSE B 22 8 HET MSE B 37 8 HET MSE B 100 8 HET MSE B 145 8 HET MSE C 16 8 HET MSE C 22 8 HET MSE C 37 8 HET MSE C 100 8 HET MSE C 145 8 HET MSE D 16 8 HET MSE D 22 8 HET MSE D 37 8 HET MSE D 100 8 HET MSE D 145 8 HET SO4 A 146 5 HET SO4 A 147 5 HET GOL A 148 6 HET GOL A 149 6 HET NA B 146 1 HET GOL B 147 6 HET GOL B 148 6 HET SO4 C 146 5 HET SO4 C 147 5 HET SO4 C 148 5 HET SO4 D 146 5 HET SO4 D 147 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 20(C5 H11 N O2 SE) FORMUL 5 SO4 7(O4 S 2-) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 9 NA NA 1+ FORMUL 17 HOH *302(H2 O) HELIX 1 1 ASN A 5 ARG A 8 5 4 HELIX 2 2 HIS A 9 LYS A 24 1 16 HELIX 3 3 THR A 30 GLY A 34 5 5 HELIX 4 4 GLY A 36 ALA A 49 1 14 HELIX 5 5 SER A 53 GLY A 62 1 10 HELIX 6 6 ASP A 64 LYS A 78 1 15 HELIX 7 7 THR A 98 ALA A 112 1 15 HELIX 8 8 ALA A 112 LEU A 120 1 9 HELIX 9 9 GLU A 124 MSE A 145 1 22 HELIX 10 10 ASN B 5 ARG B 8 5 4 HELIX 11 11 HIS B 9 LEU B 23 1 15 HELIX 12 12 THR B 30 GLY B 34 5 5 HELIX 13 13 GLY B 36 ALA B 49 1 14 HELIX 14 14 SER B 53 GLY B 62 1 10 HELIX 15 15 ASP B 64 LYS B 78 1 15 HELIX 16 16 THR B 98 ALA B 112 1 15 HELIX 17 17 ALA B 112 LEU B 120 1 9 HELIX 18 18 GLU B 124 MSE B 145 1 22 HELIX 19 19 HIS C 9 GLY C 34 1 26 HELIX 20 20 GLY C 36 ALA C 49 1 14 HELIX 21 21 SER C 53 GLY C 62 1 10 HELIX 22 22 ASP C 64 LYS C 78 1 15 HELIX 23 23 THR C 98 LEU C 120 1 23 HELIX 24 24 GLU C 124 GLN C 144 1 21 HELIX 25 25 HIS D 9 GLY D 34 1 26 HELIX 26 26 GLY D 36 ALA D 49 1 14 HELIX 27 27 SER D 53 GLY D 62 1 10 HELIX 28 28 ASP D 64 LYS D 78 1 15 HELIX 29 29 THR D 98 LEU D 120 1 23 HELIX 30 30 GLU D 124 MSE D 145 1 22 SHEET 1 A 2 ILE A 81 GLU A 82 0 SHEET 2 A 2 ASN A 96 LEU A 97 -1 O ASN A 96 N GLU A 82 SHEET 1 B 2 ILE B 81 GLU B 82 0 SHEET 2 B 2 ASN B 96 LEU B 97 -1 O ASN B 96 N GLU B 82 SHEET 1 C 2 ILE C 81 ASN C 84 0 SHEET 2 C 2 ALA C 94 LEU C 97 -1 O ALA C 94 N ASN C 84 SHEET 1 D 2 ILE D 81 ASN D 84 0 SHEET 2 D 2 ALA D 94 LEU D 97 -1 O ALA D 94 N ASN D 84 LINK C ASN A 15 N AMSE A 16 1555 1555 1.32 LINK C ASN A 15 N BMSE A 16 1555 1555 1.34 LINK C AMSE A 16 N LEU A 17 1555 1555 1.33 LINK C BMSE A 16 N LEU A 17 1555 1555 1.33 LINK C LEU A 21 N MSE A 22 1555 1555 1.33 LINK C MSE A 22 N LEU A 23 1555 1555 1.33 LINK C GLY A 36 N MSE A 37 1555 1555 1.33 LINK C MSE A 37 N THR A 38 1555 1555 1.33 LINK C GLU A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N GLY A 101 1555 1555 1.33 LINK C GLN A 144 N MSE A 145 1555 1555 1.33 LINK C ASN B 15 N AMSE B 16 1555 1555 1.34 LINK C ASN B 15 N BMSE B 16 1555 1555 1.32 LINK C AMSE B 16 N LEU B 17 1555 1555 1.33 LINK C BMSE B 16 N LEU B 17 1555 1555 1.33 LINK C LEU B 21 N MSE B 22 1555 1555 1.33 LINK C MSE B 22 N LEU B 23 1555 1555 1.33 LINK C GLY B 36 N MSE B 37 1555 1555 1.33 LINK C MSE B 37 N THR B 38 1555 1555 1.33 LINK C GLU B 99 N MSE B 100 1555 1555 1.32 LINK C MSE B 100 N GLY B 101 1555 1555 1.32 LINK C GLN B 144 N MSE B 145 1555 1555 1.34 LINK C ASN C 15 N MSE C 16 1555 1555 1.33 LINK C MSE C 16 N LEU C 17 1555 1555 1.33 LINK C LEU C 21 N MSE C 22 1555 1555 1.33 LINK C MSE C 22 N LEU C 23 1555 1555 1.34 LINK C GLY C 36 N MSE C 37 1555 1555 1.33 LINK C MSE C 37 N THR C 38 1555 1555 1.32 LINK C GLU C 99 N MSE C 100 1555 1555 1.33 LINK C MSE C 100 N GLY C 101 1555 1555 1.33 LINK C GLN C 144 N MSE C 145 1555 1555 1.33 LINK C ASN D 15 N MSE D 16 1555 1555 1.33 LINK C MSE D 16 N LEU D 17 1555 1555 1.33 LINK C LEU D 21 N MSE D 22 1555 1555 1.33 LINK C MSE D 22 N LEU D 23 1555 1555 1.34 LINK C GLY D 36 N MSE D 37 1555 1555 1.33 LINK C MSE D 37 N THR D 38 1555 1555 1.32 LINK C GLU D 99 N MSE D 100 1555 1555 1.33 LINK C MSE D 100 N GLY D 101 1555 1555 1.33 LINK C GLN D 144 N MSE D 145 1555 1555 1.33 LINK O PHE B 33 NA NA B 146 1555 1555 2.73 LINK OH TYR B 80 NA NA B 146 1555 1555 2.77 SITE 1 AC1 5 ALA A 49 SER A 50 HOH A 396 LYS C 20 SITE 2 AC1 5 HOH C 165 SITE 1 AC2 4 LYS A 24 TYR A 29 MSE A 37 GOL A 149 SITE 1 AC3 10 MSE A 22 ARG A 41 SER A 44 LEU A 61 SITE 2 AC3 10 HOH A 161 HOH A 483 HOH A 494 ASN C 15 SITE 3 AC3 10 ASN C 19 MSE C 22 SITE 1 AC4 7 THR A 30 TRP A 40 ALA A 112 SO4 A 147 SITE 2 AC4 7 HOH A 156 HOH A 171 HIS C 9 SITE 1 AC5 5 PHE B 33 TYR B 80 GLY C 85 TYR C 93 SITE 2 AC5 5 HOH C 393 SITE 1 AC6 9 MSE B 22 ARG B 41 SER B 44 LEU B 61 SITE 2 AC6 9 HOH B 157 HOH B 445 ASN D 15 ASN D 19 SITE 3 AC6 9 MSE D 22 SITE 1 AC7 5 THR B 38 ARG B 41 HOH B 482 ASP D 64 SITE 2 AC7 5 HOH D 176 SITE 1 AC8 4 ASP A 64 LYS A 65 ARG C 70 LYS C 74 SITE 1 AC9 3 GLU A 125 LYS A 128 ARG C 8 SITE 1 BC1 7 SER C 50 ASP C 51 HIS C 86 ARG C 91 SITE 2 BC1 7 ALA C 94 ASN C 96 HOH C 170 SITE 1 BC2 3 ALA B 49 SER B 50 LYS D 20 SITE 1 BC3 4 ASP B 64 LYS B 65 ARG D 70 LYS D 74 CRYST1 72.809 59.573 97.753 90.00 89.99 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013735 0.000000 -0.000002 0.00000 SCALE2 0.000000 0.016786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010230 0.00000