HEADER HYDROLASE 02-JUL-10 3NT7 TITLE CRYSTAL STRUCTURE OF VACCINIA VIRUS URACIL DNA GLYCOSYLASE R187V TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: URACIL-DNA GLYCOSYLASE; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: UDG; COMPND 5 EC: 3.2.2.27; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS WESTERN RESERVE; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 696871; SOURCE 5 GENE: D4R, VACWR109; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA (DE3) PLYSS KEYWDS URACIL-DNA GLYCOSYLASE FOLD, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.CHATTOPADHYAY REVDAT 3 06-SEP-23 3NT7 1 REMARK SEQADV REVDAT 2 29-JUN-16 3NT7 1 SOURCE VERSN REVDAT 1 18-MAY-11 3NT7 0 JRNL AUTH A.M.DRUCK SHUDOFSKY,J.E.SILVERMAN,D.CHATTOPADHYAY, JRNL AUTH 2 R.P.RICCIARDI JRNL TITL VACCINIA VIRUS D4 MUTANTS DEFECTIVE IN PROCESSIVE DNA JRNL TITL 2 SYNTHESIS RETAIN BINDING TO A20 AND DNA. JRNL REF J.VIROL. V. 84 12325 2010 JRNL REFN ISSN 0022-538X JRNL PMID 20861259 JRNL DOI 10.1128/JVI.01435-10 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 19959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1103 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3483 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : -0.11000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.447 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.063 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3599 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4894 ; 1.118 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 426 ; 5.841 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 159 ;35.923 ;24.214 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;14.730 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;13.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2687 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 0.335 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3522 ; 0.633 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1447 ; 0.854 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1372 ; 1.415 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 160 REMARK 3 RESIDUE RANGE : C 161 C 166 REMARK 3 RESIDUE RANGE : C 174 C 218 REMARK 3 ORIGIN FOR THE GROUP (A): -9.8690 13.8400 13.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.2880 REMARK 3 T33: 0.0687 T12: 0.0272 REMARK 3 T13: 0.0385 T23: 0.0739 REMARK 3 L TENSOR REMARK 3 L11: 3.3466 L22: 1.0217 REMARK 3 L33: 2.2602 L12: -0.5596 REMARK 3 L13: 1.5500 L23: -0.3671 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: -0.2681 S13: 0.2151 REMARK 3 S21: -0.0740 S22: -0.0294 S23: -0.0159 REMARK 3 S31: -0.1626 S32: 0.0067 S33: -0.0163 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 160 REMARK 3 RESIDUE RANGE : A 161 A 169 REMARK 3 RESIDUE RANGE : A 174 A 218 REMARK 3 ORIGIN FOR THE GROUP (A): -49.1290 15.0270 30.3930 REMARK 3 T TENSOR REMARK 3 T11: 0.0419 T22: 0.4185 REMARK 3 T33: 0.0430 T12: -0.0632 REMARK 3 T13: 0.0379 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 5.8016 L22: 1.1097 REMARK 3 L33: 2.0442 L12: 0.7496 REMARK 3 L13: 0.8436 L23: 0.3974 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.6962 S13: 0.2117 REMARK 3 S21: 0.0133 S22: 0.0061 S23: -0.0265 REMARK 3 S31: -0.1656 S32: 0.4408 S33: -0.1009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 2010 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OWQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 0.1M HEPES , PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.95933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.47967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.47967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.95933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.47967 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.47967 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.47967 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 85.19500 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 85.19500 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 46.47967 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C -19 REMARK 465 GLY C -18 REMARK 465 SER C -17 REMARK 465 SER C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 HIS C -10 REMARK 465 SER C -9 REMARK 465 SER C -8 REMARK 465 GLY C -7 REMARK 465 LEU C -6 REMARK 465 VAL C -5 REMARK 465 PRO C -4 REMARK 465 ARG C -3 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 ARG C 167 REMARK 465 ALA C 168 REMARK 465 LYS C 169 REMARK 465 LEU C 170 REMARK 465 GLU C 171 REMARK 465 SER C 172 REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 LEU A 170 REMARK 465 GLU A 171 REMARK 465 SER A 172 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR C 11 -34.63 72.31 REMARK 500 PHE C 79 -13.64 74.31 REMARK 500 ASP C 138 -72.18 -17.18 REMARK 500 SER C 164 49.01 -154.33 REMARK 500 TYR A 11 -41.18 73.16 REMARK 500 ASP A 17 -37.01 -37.22 REMARK 500 PHE A 79 -13.74 73.39 REMARK 500 ASP A 138 -72.98 -20.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 219 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OWQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VACCINIA VIRUS URACIL-DNA GLYCOSYLASE REMARK 900 RELATED ID: 2OWR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VACCINIA VIRUS URACIL-DNA GLYCOSYLASE DBREF 3NT7 C 1 218 UNP Q91UM2 UNG_VACCA 1 218 DBREF 3NT7 A 1 218 UNP Q91UM2 UNG_VACCA 1 218 SEQADV 3NT7 MET C -19 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 GLY C -18 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER C -17 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER C -16 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS C -15 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS C -14 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS C -13 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS C -12 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS C -11 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS C -10 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER C -9 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER C -8 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 GLY C -7 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 LEU C -6 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 VAL C -5 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 PRO C -4 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 ARG C -3 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 GLY C -2 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER C -1 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS C 0 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 VAL C 187 UNP Q91UM2 ARG 187 ENGINEERED MUTATION SEQADV 3NT7 MET A -19 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 GLY A -18 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER A -17 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER A -16 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS A -15 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS A -14 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS A -13 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS A -12 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS A -11 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS A -10 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER A -9 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER A -8 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 GLY A -7 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 LEU A -6 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 VAL A -5 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 PRO A -4 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 ARG A -3 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 GLY A -2 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 SER A -1 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 HIS A 0 UNP Q91UM2 EXPRESSION TAG SEQADV 3NT7 VAL A 187 UNP Q91UM2 ARG 187 ENGINEERED MUTATION SEQRES 1 C 238 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 238 LEU VAL PRO ARG GLY SER HIS MET ASN SER VAL THR VAL SEQRES 3 C 238 SER HIS ALA PRO TYR THR ILE THR TYR HIS ASP ASP TRP SEQRES 4 C 238 GLU PRO VAL MET SER GLN LEU VAL GLU PHE TYR ASN GLU SEQRES 5 C 238 VAL ALA SER TRP LEU LEU ARG ASP GLU THR SER PRO ILE SEQRES 6 C 238 PRO ASP LYS PHE PHE ILE GLN LEU LYS GLN PRO LEU ARG SEQRES 7 C 238 ASN LYS ARG VAL CYS VAL CYS GLY ILE ASP PRO TYR PRO SEQRES 8 C 238 LYS ASP GLY THR GLY VAL PRO PHE GLU SER PRO ASN PHE SEQRES 9 C 238 THR LYS LYS SER ILE LYS GLU ILE ALA SER SER ILE SER SEQRES 10 C 238 ARG LEU THR GLY VAL ILE ASP TYR LYS GLY TYR ASN LEU SEQRES 11 C 238 ASN ILE ILE ASP GLY VAL ILE PRO TRP ASN TYR TYR LEU SEQRES 12 C 238 SER CYS LYS LEU GLY GLU THR LYS SER HIS ALA ILE TYR SEQRES 13 C 238 TRP ASP LYS ILE SER LYS LEU LEU LEU GLN HIS ILE THR SEQRES 14 C 238 LYS HIS VAL SER VAL LEU TYR CYS LEU GLY LYS THR ASP SEQRES 15 C 238 PHE SER ASN ILE ARG ALA LYS LEU GLU SER PRO VAL THR SEQRES 16 C 238 THR ILE VAL GLY TYR HIS PRO ALA ALA ARG ASP VAL GLN SEQRES 17 C 238 PHE GLU LYS ASP ARG SER PHE GLU ILE ILE ASN VAL LEU SEQRES 18 C 238 LEU GLU LEU ASP ASN LYS ALA PRO ILE ASN TRP ALA GLN SEQRES 19 C 238 GLY PHE ILE TYR SEQRES 1 A 238 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 238 LEU VAL PRO ARG GLY SER HIS MET ASN SER VAL THR VAL SEQRES 3 A 238 SER HIS ALA PRO TYR THR ILE THR TYR HIS ASP ASP TRP SEQRES 4 A 238 GLU PRO VAL MET SER GLN LEU VAL GLU PHE TYR ASN GLU SEQRES 5 A 238 VAL ALA SER TRP LEU LEU ARG ASP GLU THR SER PRO ILE SEQRES 6 A 238 PRO ASP LYS PHE PHE ILE GLN LEU LYS GLN PRO LEU ARG SEQRES 7 A 238 ASN LYS ARG VAL CYS VAL CYS GLY ILE ASP PRO TYR PRO SEQRES 8 A 238 LYS ASP GLY THR GLY VAL PRO PHE GLU SER PRO ASN PHE SEQRES 9 A 238 THR LYS LYS SER ILE LYS GLU ILE ALA SER SER ILE SER SEQRES 10 A 238 ARG LEU THR GLY VAL ILE ASP TYR LYS GLY TYR ASN LEU SEQRES 11 A 238 ASN ILE ILE ASP GLY VAL ILE PRO TRP ASN TYR TYR LEU SEQRES 12 A 238 SER CYS LYS LEU GLY GLU THR LYS SER HIS ALA ILE TYR SEQRES 13 A 238 TRP ASP LYS ILE SER LYS LEU LEU LEU GLN HIS ILE THR SEQRES 14 A 238 LYS HIS VAL SER VAL LEU TYR CYS LEU GLY LYS THR ASP SEQRES 15 A 238 PHE SER ASN ILE ARG ALA LYS LEU GLU SER PRO VAL THR SEQRES 16 A 238 THR ILE VAL GLY TYR HIS PRO ALA ALA ARG ASP VAL GLN SEQRES 17 A 238 PHE GLU LYS ASP ARG SER PHE GLU ILE ILE ASN VAL LEU SEQRES 18 A 238 LEU GLU LEU ASP ASN LYS ALA PRO ILE ASN TRP ALA GLN SEQRES 19 A 238 GLY PHE ILE TYR HET SO4 C 219 5 HET SO4 C 220 5 HET GOL C 221 6 HET GOL A 219 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *73(H2 O) HELIX 1 1 ASP C 18 PRO C 21 5 4 HELIX 2 2 VAL C 22 ARG C 39 1 18 HELIX 3 3 ILE C 45 PHE C 49 5 5 HELIX 4 4 PHE C 50 GLN C 55 5 6 HELIX 5 5 LYS C 86 GLY C 101 1 16 HELIX 6 6 LEU C 110 ILE C 113 5 4 HELIX 7 7 HIS C 133 THR C 149 1 17 HELIX 8 8 VAL C 187 ASP C 205 1 19 HELIX 9 9 ASN C 211 GLN C 214 5 4 HELIX 10 10 TRP A 19 LEU A 38 1 20 HELIX 11 11 ILE A 45 PHE A 49 5 5 HELIX 12 12 PHE A 50 GLN A 55 5 6 HELIX 13 13 LYS A 86 GLY A 101 1 16 HELIX 14 14 LEU A 110 ILE A 113 5 4 HELIX 15 15 HIS A 133 THR A 149 1 17 HELIX 16 16 VAL A 187 ASP A 205 1 19 HELIX 17 17 ASN A 211 GLN A 214 5 4 SHEET 1 A 2 MET C 1 THR C 5 0 SHEET 2 A 2 THR C 12 HIS C 16 -1 O TYR C 15 N ASN C 2 SHEET 1 B 2 THR C 42 SER C 43 0 SHEET 2 B 2 CYS C 125 LYS C 126 -1 O CYS C 125 N SER C 43 SHEET 1 C 4 VAL C 116 ASN C 120 0 SHEET 2 C 4 VAL C 62 GLY C 66 1 N VAL C 64 O TRP C 119 SHEET 3 C 4 VAL C 154 LEU C 158 1 O TYR C 156 N CYS C 65 SHEET 4 C 4 THR C 175 GLY C 179 1 O GLY C 179 N CYS C 157 SHEET 1 D 2 GLY C 107 TYR C 108 0 SHEET 2 D 2 PHE C 216 ILE C 217 -1 O ILE C 217 N GLY C 107 SHEET 1 E 2 MET A 1 THR A 5 0 SHEET 2 E 2 THR A 12 HIS A 16 -1 O ILE A 13 N VAL A 4 SHEET 1 F 2 THR A 42 SER A 43 0 SHEET 2 F 2 CYS A 125 LYS A 126 -1 O CYS A 125 N SER A 43 SHEET 1 G 4 VAL A 116 ASN A 120 0 SHEET 2 G 4 VAL A 62 GLY A 66 1 N GLY A 66 O TRP A 119 SHEET 3 G 4 VAL A 154 LEU A 158 1 O TYR A 156 N CYS A 65 SHEET 4 G 4 THR A 175 GLY A 179 1 O GLY A 179 N CYS A 157 SHEET 1 H 2 GLY A 107 TYR A 108 0 SHEET 2 H 2 PHE A 216 ILE A 217 -1 O ILE A 217 N GLY A 107 CISPEP 1 ALA C 9 PRO C 10 0 7.11 CISPEP 2 SER C 43 PRO C 44 0 -2.36 CISPEP 3 ALA A 9 PRO A 10 0 7.73 CISPEP 4 SER A 43 PRO A 44 0 -4.94 SITE 1 AC1 5 GLY C 159 LYS C 160 THR C 161 TYR C 180 SITE 2 AC1 5 HIS C 181 SITE 1 AC2 3 ARG A 98 HOH A 238 ARG C 98 SITE 1 AC3 1 ASN C 199 SITE 1 AC4 4 GLY A 159 LYS A 160 TYR A 180 HIS A 181 CRYST1 85.195 85.195 139.439 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011738 0.006777 0.000000 0.00000 SCALE2 0.000000 0.013554 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007172 0.00000