HEADER OXIDOREDUCTASE 03-JUL-10 3NTA TITLE STRUCTURE OF THE SHEWANELLA LOIHICA PV-4 NADH-DEPENDENT PERSULFIDE TITLE 2 REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULPHIDE COMPND 3 OXIDOREDUCTASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.8.1.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA LOIHICA; SOURCE 3 ORGANISM_TAXID: 323850; SOURCE 4 STRAIN: ATCC BAA-1088 / PV-4; SOURCE 5 GENE: SHEW_0729; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET21B+ KEYWDS COA, FAD, PERSULFIDE REDUCTASE, SULFUR METABOLISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.H.SAZINSKY,E.J.CRANE,M.D.WARNER,V.LUKOSE,K.H.LEE REVDAT 4 22-NOV-23 3NTA 1 REMARK REVDAT 3 06-SEP-23 3NTA 1 REMARK SEQADV LINK REVDAT 2 22-FEB-12 3NTA 1 JRNL VERSN REVDAT 1 08-DEC-10 3NTA 0 JRNL AUTH M.D.WARNER,V.LUKOSE,K.H.LEE,K.LOPEZ,M.H SAZINSKY,E.J.CRANE JRNL TITL CHARACTERIZATION OF AN NADH-DEPENDENT PERSULFIDE REDUCTASE JRNL TITL 2 FROM SHEWANELLA LOIHICA PV-4: IMPLICATIONS FOR THE MECHANISM JRNL TITL 3 OF SULFUR RESPIRATION VIA FAD-DEPENDENT ENZYMES . JRNL REF BIOCHEMISTRY V. 50 194 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 21090815 JRNL DOI 10.1021/BI101232Y REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 116.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 101779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6191 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 309 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8589 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 204 REMARK 3 SOLVENT ATOMS : 545 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -29.53000 REMARK 3 B22 (A**2) : -29.53000 REMARK 3 B33 (A**2) : 59.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.860 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8952 ; 0.038 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12157 ; 2.730 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1130 ; 7.848 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 399 ;38.122 ;24.436 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1484 ;17.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;21.062 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1371 ; 0.225 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6735 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5589 ; 1.553 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8947 ; 2.417 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3363 ; 4.669 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3209 ; 6.437 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.479 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : H,-H-K,-L REMARK 3 TWIN FRACTION : 0.521 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : SI 111 CHANNEL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101779 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 117.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3ICR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM NA ACETATE, 200 MM AMMONIUM REMARK 280 ACETATE, 5% PEG 8000, PH 4.7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 566 REMARK 465 LEU A 567 REMARK 465 GLU A 568 REMARK 465 HIS A 569 REMARK 465 HIS A 570 REMARK 465 HIS A 571 REMARK 465 HIS A 572 REMARK 465 HIS A 573 REMARK 465 HIS A 574 REMARK 465 VAL B 566 REMARK 465 LEU B 567 REMARK 465 GLU B 568 REMARK 465 HIS B 569 REMARK 465 HIS B 570 REMARK 465 HIS B 571 REMARK 465 HIS B 572 REMARK 465 HIS B 573 REMARK 465 HIS B 574 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 176 CD CE NZ REMARK 470 MSE B 1 CG SE CE REMARK 470 TYR B 558 OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 192 O ALA A 564 1.35 REMARK 500 OD2 ASP B 402 O HOH B 624 2.07 REMARK 500 ND2 ASN B 250 OE1 GLU B 252 2.09 REMARK 500 OD2 ASP B 295 O HOH B 765 2.10 REMARK 500 OD1 ASN A 494 O HOH A 672 2.11 REMARK 500 OH TYR B 342 O HOH B 635 2.17 REMARK 500 OG SER B 50 OE1 GLU B 52 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN A 482 ND2 ASN B 482 1554 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 306 CD GLU A 306 OE2 -0.071 REMARK 500 VAL A 378 CB VAL A 378 CG2 -0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 21 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 34 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU A 111 CB - CG - CD2 ANGL. DEV. = -11.3 DEGREES REMARK 500 ASP A 138 CB - CG - OD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 ASP A 140 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 LEU A 143 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ASP A 204 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 LEU A 209 CB - CG - CD2 ANGL. DEV. = 12.8 DEGREES REMARK 500 ASP A 257 CB - CG - OD1 ANGL. DEV. = -7.0 DEGREES REMARK 500 LEU A 259 CB - CG - CD1 ANGL. DEV. = 11.0 DEGREES REMARK 500 LEU A 282 CB - CG - CD1 ANGL. DEV. = 13.3 DEGREES REMARK 500 GLN A 292 CB - CA - C ANGL. DEV. = 13.2 DEGREES REMARK 500 ASP A 309 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 333 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 LEU A 356 CB - CG - CD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ASP A 402 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LYS A 416 CD - CE - NZ ANGL. DEV. = -18.3 DEGREES REMARK 500 ASP A 424 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 431 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 431 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 439 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 LYS A 454 CD - CE - NZ ANGL. DEV. = 18.1 DEGREES REMARK 500 LEU A 483 CB - CG - CD1 ANGL. DEV. = 11.9 DEGREES REMARK 500 LEU A 490 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU A 490 CB - CG - CD2 ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 515 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG A 517 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 535 CB - CG - CD2 ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG A 536 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 19 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 98 CB - CA - C ANGL. DEV. = -14.9 DEGREES REMARK 500 ARG B 134 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 ILE B 136 CG1 - CB - CG2 ANGL. DEV. = -15.3 DEGREES REMARK 500 ASP B 138 CB - CG - OD1 ANGL. DEV. = -8.6 DEGREES REMARK 500 ASP B 138 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 140 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 141 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP B 191 CB - CG - OD1 ANGL. DEV. = -9.4 DEGREES REMARK 500 ASP B 204 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 LEU B 209 CB - CG - CD2 ANGL. DEV. = 12.5 DEGREES REMARK 500 ASP B 257 CB - CG - OD1 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG B 266 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 273 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP B 295 CB - CG - OD1 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP B 303 CB - CG - OD1 ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP B 303 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG B 338 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 56 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 10 -112.51 -114.52 REMARK 500 ASN A 72 10.11 54.78 REMARK 500 MSE A 187 103.27 40.15 REMARK 500 PHE A 354 -115.05 45.81 REMARK 500 ALA A 386 136.10 -32.52 REMARK 500 CYS A 531 -152.19 -133.29 REMARK 500 VAL B 10 -130.37 -104.10 REMARK 500 SER B 39 47.78 70.27 REMARK 500 LEU B 97 -45.25 -29.07 REMARK 500 THR B 293 -169.50 -78.33 REMARK 500 PHE B 354 -122.05 54.24 REMARK 500 TYR B 450 -52.60 -121.73 REMARK 500 ASN B 482 -115.48 -74.42 REMARK 500 LEU B 483 139.70 87.57 REMARK 500 CYS B 531 -162.83 -128.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 575 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 575 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NT6 RELATED DB: PDB REMARK 900 DOUBLE MUTANT C43S/C531S REMARK 900 RELATED ID: 3NTD RELATED DB: PDB DBREF 3NTA A 1 566 UNP A3QAV3 A3QAV3_SHELP 1 566 DBREF 3NTA B 1 566 UNP A3QAV3 A3QAV3_SHELP 1 566 SEQADV 3NTA LEU A 567 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA GLU A 568 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS A 569 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS A 570 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS A 571 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS A 572 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS A 573 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS A 574 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA LEU B 567 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA GLU B 568 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS B 569 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS B 570 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS B 571 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS B 572 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS B 573 UNP A3QAV3 EXPRESSION TAG SEQADV 3NTA HIS B 574 UNP A3QAV3 EXPRESSION TAG SEQRES 1 A 574 MSE LYS LYS ILE LEU ILE ILE GLY GLY VAL ALA GLY GLY SEQRES 2 A 574 ALA SER ALA ALA ALA ARG ALA ARG ARG LEU SER GLU THR SEQRES 3 A 574 ALA GLU ILE ILE MSE PHE GLU ARG GLY GLU TYR VAL SER SEQRES 4 A 574 PHE ALA ASN CYS GLY LEU PRO TYR HIS ILE SER GLY GLU SEQRES 5 A 574 ILE ALA GLN ARG SER ALA LEU VAL LEU GLN THR PRO GLU SEQRES 6 A 574 SER PHE LYS ALA ARG PHE ASN VAL GLU VAL ARG VAL LYS SEQRES 7 A 574 HIS GLU VAL VAL ALA ILE ASP ARG ALA ALA LYS LEU VAL SEQRES 8 A 574 THR VAL ARG ARG LEU LEU ASP GLY SER GLU TYR GLN GLU SEQRES 9 A 574 SER TYR ASP THR LEU LEU LEU SER PRO GLY ALA ALA PRO SEQRES 10 A 574 ILE VAL PRO PRO ILE PRO GLY VAL ASP ASN PRO LEU THR SEQRES 11 A 574 HIS SER LEU ARG ASN ILE PRO ASP MSE ASP ARG ILE LEU SEQRES 12 A 574 GLN THR ILE GLN MSE ASN ASN VAL GLU HIS ALA THR VAL SEQRES 13 A 574 VAL GLY GLY GLY PHE ILE GLY LEU GLU MSE MSE GLU SER SEQRES 14 A 574 LEU HIS HIS LEU GLY ILE LYS THR THR LEU LEU GLU LEU SEQRES 15 A 574 ALA ASP GLN VAL MSE THR PRO VAL ASP ARG GLU MSE ALA SEQRES 16 A 574 GLY PHE ALA HIS GLN ALA ILE ARG ASP GLN GLY VAL ASP SEQRES 17 A 574 LEU ARG LEU GLY THR ALA LEU SER GLU VAL SER TYR GLN SEQRES 18 A 574 VAL GLN THR HIS VAL ALA SER ASP ALA ALA GLY GLU ASP SEQRES 19 A 574 THR ALA HIS GLN HIS ILE LYS GLY HIS LEU SER LEU THR SEQRES 20 A 574 LEU SER ASN GLY GLU LEU LEU GLU THR ASP LEU LEU ILE SEQRES 21 A 574 MSE ALA ILE GLY VAL ARG PRO GLU THR GLN LEU ALA ARG SEQRES 22 A 574 ASP ALA GLY LEU ALA ILE GLY GLU LEU GLY GLY ILE LYS SEQRES 23 A 574 VAL ASN ALA MSE MSE GLN THR SER ASP PRO ALA ILE TYR SEQRES 24 A 574 ALA VAL GLY ASP ALA VAL GLU GLU GLN ASP PHE VAL THR SEQRES 25 A 574 GLY GLN ALA CYS LEU VAL PRO LEU ALA GLY PRO ALA ASN SEQRES 26 A 574 ARG GLN GLY ARG MSE ALA ALA ASP ASN MSE PHE GLY ARG SEQRES 27 A 574 GLU GLU ARG TYR GLN GLY THR GLN GLY THR ALA ILE CYS SEQRES 28 A 574 LYS VAL PHE ASP LEU ALA VAL GLY ALA THR GLY LYS ASN SEQRES 29 A 574 GLU LYS GLN LEU LYS GLN ALA GLY ILE ALA PHE GLU LYS SEQRES 30 A 574 VAL TYR VAL HIS THR ALA SER HIS ALA SER TYR TYR PRO SEQRES 31 A 574 GLY ALA GLU VAL VAL SER PHE LYS LEU LEU PHE ASP PRO SEQRES 32 A 574 VAL LYS GLY THR ILE PHE GLY ALA GLN ALA VAL GLY LYS SEQRES 33 A 574 ASP GLY ILE ASP LYS ARG ILE ASP VAL MSE ALA VAL ALA SEQRES 34 A 574 GLN ARG ALA GLY MSE THR VAL GLU GLN LEU GLN HIS LEU SEQRES 35 A 574 GLU LEU SER TYR ALA PRO PRO TYR GLY SER ALA LYS ASP SEQRES 36 A 574 VAL ILE ASN GLN ALA ALA PHE VAL ALA SER ASN ILE ILE SEQRES 37 A 574 LYS GLY ASP ALA THR PRO ILE HIS PHE ASP GLN ILE ASP SEQRES 38 A 574 ASN LEU SER GLU ASP GLN LEU LEU LEU ASP VAL ARG ASN SEQRES 39 A 574 PRO GLY GLU LEU GLN ASN GLY GLY LEU GLU GLY ALA VAL SEQRES 40 A 574 ASN ILE PRO VAL ASP GLU LEU ARG ASP ARG MSE HIS GLU SEQRES 41 A 574 LEU PRO LYS ASP LYS GLU ILE ILE ILE PHE CYS GLN VAL SEQRES 42 A 574 GLY LEU ARG GLY ASN VAL ALA TYR ARG GLN LEU VAL ASN SEQRES 43 A 574 ASN GLY TYR ARG ALA ARG ASN LEU ILE GLY GLY TYR ARG SEQRES 44 A 574 THR TYR LYS PHE ALA SER VAL LEU GLU HIS HIS HIS HIS SEQRES 45 A 574 HIS HIS SEQRES 1 B 574 MSE LYS LYS ILE LEU ILE ILE GLY GLY VAL ALA GLY GLY SEQRES 2 B 574 ALA SER ALA ALA ALA ARG ALA ARG ARG LEU SER GLU THR SEQRES 3 B 574 ALA GLU ILE ILE MSE PHE GLU ARG GLY GLU TYR VAL SER SEQRES 4 B 574 PHE ALA ASN CYS GLY LEU PRO TYR HIS ILE SER GLY GLU SEQRES 5 B 574 ILE ALA GLN ARG SER ALA LEU VAL LEU GLN THR PRO GLU SEQRES 6 B 574 SER PHE LYS ALA ARG PHE ASN VAL GLU VAL ARG VAL LYS SEQRES 7 B 574 HIS GLU VAL VAL ALA ILE ASP ARG ALA ALA LYS LEU VAL SEQRES 8 B 574 THR VAL ARG ARG LEU LEU ASP GLY SER GLU TYR GLN GLU SEQRES 9 B 574 SER TYR ASP THR LEU LEU LEU SER PRO GLY ALA ALA PRO SEQRES 10 B 574 ILE VAL PRO PRO ILE PRO GLY VAL ASP ASN PRO LEU THR SEQRES 11 B 574 HIS SER LEU ARG ASN ILE PRO ASP MSE ASP ARG ILE LEU SEQRES 12 B 574 GLN THR ILE GLN MSE ASN ASN VAL GLU HIS ALA THR VAL SEQRES 13 B 574 VAL GLY GLY GLY PHE ILE GLY LEU GLU MSE MSE GLU SER SEQRES 14 B 574 LEU HIS HIS LEU GLY ILE LYS THR THR LEU LEU GLU LEU SEQRES 15 B 574 ALA ASP GLN VAL MSE THR PRO VAL ASP ARG GLU MSE ALA SEQRES 16 B 574 GLY PHE ALA HIS GLN ALA ILE ARG ASP GLN GLY VAL ASP SEQRES 17 B 574 LEU ARG LEU GLY THR ALA LEU SER GLU VAL SER TYR GLN SEQRES 18 B 574 VAL GLN THR HIS VAL ALA SER ASP ALA ALA GLY GLU ASP SEQRES 19 B 574 THR ALA HIS GLN HIS ILE LYS GLY HIS LEU SER LEU THR SEQRES 20 B 574 LEU SER ASN GLY GLU LEU LEU GLU THR ASP LEU LEU ILE SEQRES 21 B 574 MSE ALA ILE GLY VAL ARG PRO GLU THR GLN LEU ALA ARG SEQRES 22 B 574 ASP ALA GLY LEU ALA ILE GLY GLU LEU GLY GLY ILE LYS SEQRES 23 B 574 VAL ASN ALA MSE MSE GLN THR SER ASP PRO ALA ILE TYR SEQRES 24 B 574 ALA VAL GLY ASP ALA VAL GLU GLU GLN ASP PHE VAL THR SEQRES 25 B 574 GLY GLN ALA CYS LEU VAL PRO LEU ALA GLY PRO ALA ASN SEQRES 26 B 574 ARG GLN GLY ARG MSE ALA ALA ASP ASN MSE PHE GLY ARG SEQRES 27 B 574 GLU GLU ARG TYR GLN GLY THR GLN GLY THR ALA ILE CYS SEQRES 28 B 574 LYS VAL PHE ASP LEU ALA VAL GLY ALA THR GLY LYS ASN SEQRES 29 B 574 GLU LYS GLN LEU LYS GLN ALA GLY ILE ALA PHE GLU LYS SEQRES 30 B 574 VAL TYR VAL HIS THR ALA SER HIS ALA SER TYR TYR PRO SEQRES 31 B 574 GLY ALA GLU VAL VAL SER PHE LYS LEU LEU PHE ASP PRO SEQRES 32 B 574 VAL LYS GLY THR ILE PHE GLY ALA GLN ALA VAL GLY LYS SEQRES 33 B 574 ASP GLY ILE ASP LYS ARG ILE ASP VAL MSE ALA VAL ALA SEQRES 34 B 574 GLN ARG ALA GLY MSE THR VAL GLU GLN LEU GLN HIS LEU SEQRES 35 B 574 GLU LEU SER TYR ALA PRO PRO TYR GLY SER ALA LYS ASP SEQRES 36 B 574 VAL ILE ASN GLN ALA ALA PHE VAL ALA SER ASN ILE ILE SEQRES 37 B 574 LYS GLY ASP ALA THR PRO ILE HIS PHE ASP GLN ILE ASP SEQRES 38 B 574 ASN LEU SER GLU ASP GLN LEU LEU LEU ASP VAL ARG ASN SEQRES 39 B 574 PRO GLY GLU LEU GLN ASN GLY GLY LEU GLU GLY ALA VAL SEQRES 40 B 574 ASN ILE PRO VAL ASP GLU LEU ARG ASP ARG MSE HIS GLU SEQRES 41 B 574 LEU PRO LYS ASP LYS GLU ILE ILE ILE PHE CYS GLN VAL SEQRES 42 B 574 GLY LEU ARG GLY ASN VAL ALA TYR ARG GLN LEU VAL ASN SEQRES 43 B 574 ASN GLY TYR ARG ALA ARG ASN LEU ILE GLY GLY TYR ARG SEQRES 44 B 574 THR TYR LYS PHE ALA SER VAL LEU GLU HIS HIS HIS HIS SEQRES 45 B 574 HIS HIS MODRES 3NTA MSE A 1 MET SELENOMETHIONINE MODRES 3NTA MSE A 31 MET SELENOMETHIONINE MODRES 3NTA MSE A 139 MET SELENOMETHIONINE MODRES 3NTA MSE A 148 MET SELENOMETHIONINE MODRES 3NTA MSE A 166 MET SELENOMETHIONINE MODRES 3NTA MSE A 167 MET SELENOMETHIONINE MODRES 3NTA MSE A 187 MET SELENOMETHIONINE MODRES 3NTA MSE A 194 MET SELENOMETHIONINE MODRES 3NTA MSE A 261 MET SELENOMETHIONINE MODRES 3NTA MSE A 290 MET SELENOMETHIONINE MODRES 3NTA MSE A 291 MET SELENOMETHIONINE MODRES 3NTA MSE A 330 MET SELENOMETHIONINE MODRES 3NTA MSE A 335 MET SELENOMETHIONINE MODRES 3NTA MSE A 426 MET SELENOMETHIONINE MODRES 3NTA MSE A 434 MET SELENOMETHIONINE MODRES 3NTA MSE A 518 MET SELENOMETHIONINE MODRES 3NTA MSE B 1 MET SELENOMETHIONINE MODRES 3NTA MSE B 31 MET SELENOMETHIONINE MODRES 3NTA MSE B 139 MET SELENOMETHIONINE MODRES 3NTA MSE B 148 MET SELENOMETHIONINE MODRES 3NTA MSE B 166 MET SELENOMETHIONINE MODRES 3NTA MSE B 167 MET SELENOMETHIONINE MODRES 3NTA MSE B 187 MET SELENOMETHIONINE MODRES 3NTA MSE B 194 MET SELENOMETHIONINE MODRES 3NTA MSE B 261 MET SELENOMETHIONINE MODRES 3NTA MSE B 290 MET SELENOMETHIONINE MODRES 3NTA MSE B 291 MET SELENOMETHIONINE MODRES 3NTA MSE B 330 MET SELENOMETHIONINE MODRES 3NTA MSE B 335 MET SELENOMETHIONINE MODRES 3NTA MSE B 426 MET SELENOMETHIONINE MODRES 3NTA MSE B 434 MET SELENOMETHIONINE MODRES 3NTA MSE B 518 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 31 8 HET MSE A 139 8 HET MSE A 148 8 HET MSE A 166 8 HET MSE A 167 8 HET MSE A 187 8 HET MSE A 194 8 HET MSE A 261 8 HET MSE A 290 8 HET MSE A 291 8 HET MSE A 330 8 HET MSE A 335 8 HET MSE A 426 8 HET MSE A 434 8 HET MSE A 518 8 HET MSE B 1 5 HET MSE B 31 8 HET MSE B 139 8 HET MSE B 148 8 HET MSE B 166 8 HET MSE B 167 8 HET MSE B 187 8 HET MSE B 194 8 HET MSE B 261 8 HET MSE B 290 8 HET MSE B 291 8 HET MSE B 330 8 HET MSE B 335 8 HET MSE B 426 8 HET MSE B 434 8 HET MSE B 518 8 HET CL A 575 1 HET FAD A 900 53 HET COA A 901 48 HET CL B 575 1 HET FAD B 900 53 HET COA B 901 48 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM COA COENZYME A FORMUL 1 MSE 32(C5 H11 N O2 SE) FORMUL 3 CL 2(CL 1-) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 COA 2(C21 H36 N7 O16 P3 S) FORMUL 9 HOH *545(H2 O) HELIX 1 1 GLY A 12 SER A 24 1 13 HELIX 2 2 ALA A 41 CYS A 43 5 3 HELIX 3 3 GLY A 44 SER A 50 1 7 HELIX 4 4 GLN A 55 VAL A 60 5 6 HELIX 5 5 THR A 63 ASN A 72 1 10 HELIX 6 6 ASN A 135 ASN A 149 1 15 HELIX 7 7 GLY A 160 LEU A 173 1 14 HELIX 8 8 ASP A 191 GLN A 205 1 15 HELIX 9 9 THR A 269 ALA A 275 1 7 HELIX 10 10 LEU A 320 PHE A 336 1 17 HELIX 11 11 ASN A 364 ALA A 371 1 8 HELIX 12 12 GLY A 418 ALA A 432 1 15 HELIX 13 13 THR A 435 GLN A 440 1 6 HELIX 14 14 ASP A 455 LYS A 469 1 15 HELIX 15 15 ASN A 494 GLY A 501 5 8 HELIX 16 16 PRO A 510 ARG A 515 1 6 HELIX 17 17 ARG A 517 LEU A 521 5 5 HELIX 18 18 GLY A 534 ASN A 547 1 14 HELIX 19 19 GLY A 556 ALA A 564 1 9 HELIX 20 20 VAL B 10 SER B 24 1 15 HELIX 21 21 ALA B 41 CYS B 43 5 3 HELIX 22 22 GLY B 44 SER B 50 1 7 HELIX 23 23 THR B 63 ASN B 72 1 10 HELIX 24 24 ASN B 135 ASN B 149 1 15 HELIX 25 25 GLY B 160 LEU B 173 1 14 HELIX 26 26 ASP B 191 GLN B 205 1 15 HELIX 27 27 THR B 269 ALA B 275 1 7 HELIX 28 28 LEU B 320 PHE B 336 1 17 HELIX 29 29 ASN B 364 ALA B 371 1 8 HELIX 30 30 GLY B 418 ALA B 432 1 15 HELIX 31 31 THR B 435 GLN B 440 1 6 HELIX 32 32 ASP B 455 GLY B 470 1 16 HELIX 33 33 ASN B 494 GLY B 501 5 8 HELIX 34 34 PRO B 510 ASP B 512 5 3 HELIX 35 35 GLU B 513 MSE B 518 1 6 HELIX 36 36 HIS B 519 LEU B 521 5 3 HELIX 37 37 GLY B 534 ASN B 547 1 14 HELIX 38 38 GLY B 556 ALA B 564 1 9 SHEET 1 A 5 GLU A 74 ARG A 76 0 SHEET 2 A 5 GLU A 28 PHE A 32 1 N MSE A 31 O ARG A 76 SHEET 3 A 5 LYS A 3 ILE A 7 1 N ILE A 4 O GLU A 28 SHEET 4 A 5 THR A 108 LEU A 111 1 O LEU A 110 N ILE A 7 SHEET 5 A 5 ILE A 298 ALA A 300 1 O TYR A 299 N LEU A 111 SHEET 1 B 3 HIS A 79 ASP A 85 0 SHEET 2 B 3 LEU A 90 ARG A 95 -1 O LEU A 90 N ASP A 85 SHEET 3 B 3 GLU A 101 SER A 105 -1 O GLU A 104 N VAL A 91 SHEET 1 C 2 ALA A 115 PRO A 117 0 SHEET 2 C 2 VAL A 265 PRO A 267 -1 O ARG A 266 N ALA A 116 SHEET 1 D 5 THR A 130 HIS A 131 0 SHEET 2 D 5 LEU A 259 MSE A 261 1 O LEU A 259 N HIS A 131 SHEET 3 D 5 HIS A 153 VAL A 157 1 N VAL A 157 O ILE A 260 SHEET 4 D 5 LYS A 176 LEU A 180 1 O THR A 178 N VAL A 156 SHEET 5 D 5 ASP A 208 ARG A 210 1 O ARG A 210 N LEU A 179 SHEET 1 E 3 LEU A 215 GLN A 221 0 SHEET 2 E 3 HIS A 243 LEU A 248 -1 O THR A 247 N GLU A 217 SHEET 3 E 3 LEU A 253 THR A 256 -1 O LEU A 254 N LEU A 246 SHEET 1 F 2 GLU A 307 GLN A 308 0 SHEET 2 F 2 ALA A 315 CYS A 316 -1 O CYS A 316 N GLU A 307 SHEET 1 G 5 ALA A 349 VAL A 353 0 SHEET 2 G 5 LEU A 356 GLY A 362 -1 O LEU A 356 N VAL A 353 SHEET 3 G 5 ILE A 408 GLY A 415 -1 O ALA A 413 N GLY A 359 SHEET 4 G 5 VAL A 394 PHE A 401 -1 N LYS A 398 O GLN A 412 SHEET 5 G 5 GLU A 376 ALA A 383 -1 N GLU A 376 O PHE A 401 SHEET 1 H 4 VAL A 507 ASN A 508 0 SHEET 2 H 4 GLN A 487 ASP A 491 1 N ASP A 491 O VAL A 507 SHEET 3 H 4 GLU A 526 PHE A 530 1 O ILE A 528 N LEU A 488 SHEET 4 H 4 ARG A 550 ASN A 553 1 O ARG A 552 N ILE A 529 SHEET 1 I 5 GLU B 74 VAL B 77 0 SHEET 2 I 5 GLU B 28 GLU B 33 1 N MSE B 31 O ARG B 76 SHEET 3 I 5 LYS B 3 ILE B 7 1 N ILE B 4 O GLU B 28 SHEET 4 I 5 THR B 108 LEU B 111 1 O LEU B 110 N ILE B 7 SHEET 5 I 5 ILE B 298 ALA B 300 1 O TYR B 299 N LEU B 111 SHEET 1 J 3 HIS B 79 ASP B 85 0 SHEET 2 J 3 LEU B 90 ARG B 95 -1 O LEU B 90 N ASP B 85 SHEET 3 J 3 GLU B 101 SER B 105 -1 O TYR B 102 N VAL B 93 SHEET 1 K 2 ALA B 115 PRO B 117 0 SHEET 2 K 2 VAL B 265 PRO B 267 -1 O ARG B 266 N ALA B 116 SHEET 1 L 5 THR B 130 HIS B 131 0 SHEET 2 L 5 LEU B 259 MSE B 261 1 O LEU B 259 N HIS B 131 SHEET 3 L 5 HIS B 153 VAL B 157 1 N THR B 155 O ILE B 260 SHEET 4 L 5 LYS B 176 LEU B 180 1 O THR B 178 N VAL B 156 SHEET 5 L 5 ASP B 208 ARG B 210 1 O ARG B 210 N LEU B 179 SHEET 1 M 3 LEU B 215 GLN B 221 0 SHEET 2 M 3 HIS B 243 LEU B 248 -1 O HIS B 243 N GLN B 221 SHEET 3 M 3 LEU B 253 THR B 256 -1 O LEU B 254 N LEU B 246 SHEET 1 N 3 ILE B 285 LYS B 286 0 SHEET 2 N 3 VAL B 305 GLN B 308 1 O GLU B 306 N ILE B 285 SHEET 3 N 3 ALA B 315 CYS B 316 -1 O CYS B 316 N GLU B 307 SHEET 1 O 5 ALA B 349 VAL B 353 0 SHEET 2 O 5 LEU B 356 GLY B 362 -1 O VAL B 358 N CYS B 351 SHEET 3 O 5 ILE B 408 GLY B 415 -1 O ALA B 413 N GLY B 359 SHEET 4 O 5 VAL B 394 PHE B 401 -1 N SER B 396 O VAL B 414 SHEET 5 O 5 GLU B 376 ALA B 383 -1 N GLU B 376 O PHE B 401 SHEET 1 P 5 PRO B 474 ILE B 475 0 SHEET 2 P 5 ALA B 551 LEU B 554 1 O ASN B 553 N ILE B 475 SHEET 3 P 5 GLU B 526 PHE B 530 1 N ILE B 529 O ARG B 552 SHEET 4 P 5 GLN B 487 ASP B 491 1 N LEU B 490 O ILE B 528 SHEET 5 P 5 VAL B 507 ASN B 508 1 O VAL B 507 N LEU B 489 LINK C MSE A 1 N LYS A 2 1555 1555 1.32 LINK C ILE A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N PHE A 32 1555 1555 1.33 LINK C ASP A 138 N MSE A 139 1555 1555 1.35 LINK C MSE A 139 N ASP A 140 1555 1555 1.34 LINK C GLN A 147 N MSE A 148 1555 1555 1.28 LINK C MSE A 148 N ASN A 149 1555 1555 1.34 LINK C GLU A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N MSE A 167 1555 1555 1.37 LINK C MSE A 167 N GLU A 168 1555 1555 1.32 LINK C VAL A 186 N MSE A 187 1555 1555 1.33 LINK C MSE A 187 N THR A 188 1555 1555 1.33 LINK C GLU A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N ALA A 195 1555 1555 1.33 LINK C ILE A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N ALA A 262 1555 1555 1.33 LINK C ALA A 289 N MSE A 290 1555 1555 1.34 LINK C MSE A 290 N MSE A 291 1555 1555 1.32 LINK C MSE A 291 N GLN A 292 1555 1555 1.33 LINK C ARG A 329 N MSE A 330 1555 1555 1.36 LINK C MSE A 330 N ALA A 331 1555 1555 1.35 LINK C ASN A 334 N MSE A 335 1555 1555 1.34 LINK C MSE A 335 N PHE A 336 1555 1555 1.34 LINK C VAL A 425 N MSE A 426 1555 1555 1.34 LINK C MSE A 426 N ALA A 427 1555 1555 1.33 LINK C GLY A 433 N MSE A 434 1555 1555 1.33 LINK C MSE A 434 N THR A 435 1555 1555 1.31 LINK C ARG A 517 N MSE A 518 1555 1555 1.33 LINK C MSE A 518 N HIS A 519 1555 1555 1.32 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C ILE B 30 N MSE B 31 1555 1555 1.35 LINK C MSE B 31 N PHE B 32 1555 1555 1.32 LINK C ASP B 138 N MSE B 139 1555 1555 1.30 LINK C MSE B 139 N ASP B 140 1555 1555 1.37 LINK C GLN B 147 N MSE B 148 1555 1555 1.31 LINK C MSE B 148 N ASN B 149 1555 1555 1.33 LINK C GLU B 165 N MSE B 166 1555 1555 1.30 LINK C MSE B 166 N MSE B 167 1555 1555 1.35 LINK C MSE B 167 N GLU B 168 1555 1555 1.33 LINK C VAL B 186 N MSE B 187 1555 1555 1.34 LINK C MSE B 187 N THR B 188 1555 1555 1.32 LINK C GLU B 193 N MSE B 194 1555 1555 1.35 LINK C MSE B 194 N ALA B 195 1555 1555 1.34 LINK C ILE B 260 N MSE B 261 1555 1555 1.30 LINK C MSE B 261 N ALA B 262 1555 1555 1.38 LINK C ALA B 289 N MSE B 290 1555 1555 1.33 LINK C MSE B 290 N MSE B 291 1555 1555 1.33 LINK C MSE B 291 N GLN B 292 1555 1555 1.33 LINK C ARG B 329 N MSE B 330 1555 1555 1.34 LINK C MSE B 330 N ALA B 331 1555 1555 1.34 LINK C ASN B 334 N MSE B 335 1555 1555 1.33 LINK C MSE B 335 N PHE B 336 1555 1555 1.34 LINK C VAL B 425 N MSE B 426 1555 1555 1.34 LINK C MSE B 426 N ALA B 427 1555 1555 1.33 LINK C GLY B 433 N MSE B 434 1555 1555 1.33 LINK C MSE B 434 N THR B 435 1555 1555 1.34 LINK C ARG B 517 N MSE B 518 1555 1555 1.32 LINK C MSE B 518 N HIS B 519 1555 1555 1.32 SITE 1 AC1 5 ALA A 231 CYS A 531 GLN A 532 VAL A 533 SITE 2 AC1 5 ARG A 536 SITE 1 AC2 33 ILE A 7 GLY A 8 VAL A 10 ALA A 11 SITE 2 AC2 33 GLY A 12 GLU A 33 ARG A 34 ASN A 42 SITE 3 AC2 33 CYS A 43 HIS A 79 GLU A 80 VAL A 81 SITE 4 AC2 33 SER A 112 PRO A 113 GLY A 114 LEU A 133 SITE 5 AC2 33 ARG A 134 PHE A 161 ILE A 162 GLY A 302 SITE 6 AC2 33 ASP A 303 PRO A 319 LEU A 320 ALA A 321 SITE 7 AC2 33 HOH A 597 HOH A 603 HOH A 628 HOH A 661 SITE 8 AC2 33 HOH A 664 HOH A 689 HOH A 709 TYR B 446 SITE 9 AC2 33 ALA B 447 SITE 1 AC3 29 VAL A 10 ALA A 11 ALA A 14 ARG A 19 SITE 2 AC3 29 ARG A 22 SER A 39 PHE A 40 ASN A 42 SITE 3 AC3 29 CYS A 43 LEU A 61 ASN A 325 ARG A 329 SITE 4 AC3 29 HOH A 635 HOH A 637 HOH A 653 HOH A 698 SITE 5 AC3 29 HOH A 792 HOH A 948 TYR B 446 LYS B 454 SITE 6 AC3 29 GLN B 459 PHE B 462 VAL B 463 ASN B 466 SITE 7 AC3 29 GLY B 534 LEU B 535 ASN B 538 HOH B 601 SITE 8 AC3 29 HOH B 708 SITE 1 AC4 6 ALA B 231 CYS B 531 GLN B 532 VAL B 533 SITE 2 AC4 6 LEU B 535 ARG B 536 SITE 1 AC5 37 TYR A 446 ALA A 447 PRO A 448 ILE B 7 SITE 2 AC5 37 GLY B 8 VAL B 10 ALA B 11 GLY B 12 SITE 3 AC5 37 GLU B 33 ARG B 34 ASN B 42 CYS B 43 SITE 4 AC5 37 HIS B 79 GLU B 80 VAL B 81 SER B 112 SITE 5 AC5 37 PRO B 113 GLY B 114 LEU B 133 ARG B 134 SITE 6 AC5 37 PHE B 161 LEU B 271 GLY B 302 ASP B 303 SITE 7 AC5 37 PRO B 319 LEU B 320 ALA B 321 ALA B 324 SITE 8 AC5 37 HOH B 580 HOH B 581 HOH B 591 HOH B 609 SITE 9 AC5 37 HOH B 619 HOH B 639 HOH B 657 HOH B 683 SITE 10 AC5 37 HOH B 763 SITE 1 AC6 31 TYR A 446 GLN A 459 PHE A 462 VAL A 463 SITE 2 AC6 31 ASN A 466 VAL A 533 GLY A 534 LEU A 535 SITE 3 AC6 31 ASN A 538 HOH A 636 ALA B 11 ALA B 14 SITE 4 AC6 31 SER B 15 ARG B 19 ARG B 22 SER B 39 SITE 5 AC6 31 PHE B 40 ASN B 42 CYS B 43 LEU B 61 SITE 6 AC6 31 ALA B 321 ASN B 325 ARG B 329 HOH B 608 SITE 7 AC6 31 HOH B 613 HOH B 650 HOH B 651 HOH B 840 SITE 8 AC6 31 HOH B 876 HOH B 961 HOH B1091 CRYST1 134.343 134.343 81.235 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007444 0.004298 0.000000 0.00000 SCALE2 0.000000 0.008595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012310 0.00000 HETATM 1 N MSE A 1 66.064 -15.731 46.393 1.00 50.41 N HETATM 2 CA MSE A 1 64.693 -15.255 45.971 1.00 51.66 C HETATM 3 C MSE A 1 64.865 -14.913 44.495 1.00 49.43 C HETATM 4 O MSE A 1 65.917 -14.398 44.120 1.00 50.69 O HETATM 5 CB MSE A 1 64.339 -13.998 46.695 1.00 52.24 C HETATM 6 CG MSE A 1 65.322 -12.939 46.295 1.00 56.44 C HETATM 7 SE MSE A 1 64.858 -11.121 46.699 1.00 68.35 SE HETATM 8 CE MSE A 1 63.307 -10.830 45.636 1.00 61.70 C