HEADER HYDROLASE 05-JUL-10 3NTL TITLE CRYSTAL STRUCTURE OF GLUCOSE-1-PHOSPHATASE (AGPE) FROM ENTEROBACTER TITLE 2 CLOACAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACID GLUCOSE-1-PHOSPHATE PHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: AGP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HISTIDINE ACID PHOSPHATASE, PHYTATE BINDING SITE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.GRISHKOVSKAYA,W.HOEHNE REVDAT 3 06-SEP-23 3NTL 1 REMARK REVDAT 2 14-OCT-20 3NTL 1 REMARK SEQADV HETSYN REVDAT 1 27-JUL-11 3NTL 0 JRNL AUTH I.GRISHKOVSKAYA,T.HERTER,H.WESSNER,R.BORRISS,W.HOEHNE JRNL TITL CRYSTAL STRUCTURE OF GLUCOSE-1-PHOSPHATASE (AGPE) FROM JRNL TITL 2 ENTEROBACTER CLOACAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3544 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 706 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.113 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.733 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6397 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8734 ; 2.219 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 811 ; 6.652 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 293 ;39.567 ;25.768 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1109 ;18.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;21.419 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 959 ; 0.229 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4828 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3927 ; 1.232 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6361 ; 2.061 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2470 ; 3.572 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2354 ; 5.460 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NTL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110644 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.4 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 45.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.30 REMARK 200 R MERGE FOR SHELL (I) : 0.72100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1NT4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 75.53950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 43.61275 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.88133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 75.53950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 43.61275 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.88133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 75.53950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 43.61275 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.88133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.22550 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 57.76267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 87.22550 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 57.76267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 87.22550 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.76267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 1 REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 389 REMARK 465 ARG A 390 REMARK 465 SER A 391 REMARK 465 GLY A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 ARG B 390 REMARK 465 SER B 391 REMARK 465 GLY B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 465 HIS B 398 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 326 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 64 O HOH A 610 1.93 REMARK 500 O HOH A 461 O HOH A 493 1.98 REMARK 500 O LYS A 117 OG1 THR A 120 2.03 REMARK 500 OD1 ASN B 165 O HOH B 627 2.11 REMARK 500 O HOH B 525 O HOH B 667 2.16 REMARK 500 O HOH B 434 O HOH B 466 2.17 REMARK 500 O HOH A 589 O HOH B 427 2.18 REMARK 500 O LYS A 142 OG1 THR A 146 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 80 OE2 GLU A 116 2555 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 339 CD1 TYR A 339 CE1 0.093 REMARK 500 PHE B 99 CE2 PHE B 99 CD2 0.120 REMARK 500 LYS B 184 CE LYS B 184 NZ 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 10 CG1 - CB - CG2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 19 CG - CD - NE ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG A 19 CD - NE - CZ ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 19 NE - CZ - NH2 ANGL. DEV. = -12.7 DEGREES REMARK 500 LEU A 66 CB - CG - CD1 ANGL. DEV. = 10.2 DEGREES REMARK 500 LEU A 295 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 VAL A 319 CG1 - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 LEU B 47 CB - CG - CD2 ANGL. DEV. = 13.8 DEGREES REMARK 500 VAL B 197 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 VAL B 197 CG1 - CB - CG2 ANGL. DEV. = 10.8 DEGREES REMARK 500 LEU B 213 CB - CG - CD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 LYS B 277 CD - CE - NZ ANGL. DEV. = -14.7 DEGREES REMARK 500 ASP B 288 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 311 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG B 311 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 311 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -159.05 -83.66 REMARK 500 ASP A 81 -3.59 70.79 REMARK 500 SER A 89 48.63 -76.97 REMARK 500 LYS A 117 51.82 77.72 REMARK 500 VAL A 272 -71.65 -125.78 REMARK 500 ALA B 189 51.58 -141.44 REMARK 500 VAL B 272 -69.66 -127.32 REMARK 500 ASP B 325 -73.98 -117.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP A 550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IHP B 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 399 DBREF 3NTL A 2 389 UNP Q6EV19 Q6EV19_ENTCL 26 413 DBREF 3NTL B 2 389 UNP Q6EV19 Q6EV19_ENTCL 26 413 SEQADV 3NTL SER A 1 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL ALA A 16 UNP Q6EV19 HIS 40 ENGINEERED MUTATION SEQADV 3NTL ARG A 390 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL SER A 391 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL GLY A 392 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS A 393 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS A 394 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS A 395 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS A 396 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS A 397 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS A 398 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL SER B 1 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL ALA B 16 UNP Q6EV19 HIS 40 ENGINEERED MUTATION SEQADV 3NTL ARG B 390 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL SER B 391 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL GLY B 392 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS B 393 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS B 394 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS B 395 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS B 396 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS B 397 UNP Q6EV19 EXPRESSION TAG SEQADV 3NTL HIS B 398 UNP Q6EV19 EXPRESSION TAG SEQRES 1 A 398 SER PRO GLU GLY TYR GLN LEU GLU GLN VAL LEU ILE MET SEQRES 2 A 398 SER ARG ALA ASN LEU ARG ALA PRO LEU ALA ASN ASN GLY SEQRES 3 A 398 SER VAL LEU GLU GLN SER THR PRO LYS GLN TRP PRO GLU SEQRES 4 A 398 TRP GLU VAL PRO GLY GLY GLN LEU THR THR LYS GLY GLY SEQRES 5 A 398 VAL LEU GLU VAL TYR MET GLY HIS TYR MET ARG GLU TRP SEQRES 6 A 398 LEU ALA GLN GLN GLY MET VAL LYS THR GLY GLU CYS PRO SEQRES 7 A 398 ALA ALA ASP SER VAL TYR ALA TYR ALA ASN SER LEU GLN SEQRES 8 A 398 ARG THR VAL ALA THR ALA GLN PHE PHE ILE THR GLY ALA SEQRES 9 A 398 PHE PRO GLY CYS ASP VAL PRO VAL HIS HIS GLN GLU LYS SEQRES 10 A 398 MET GLY THR MET ASP PRO THR PHE ASN PRO VAL ILE THR SEQRES 11 A 398 ASP ASN SER PRO GLU PHE ARG GLU LYS ALA LEU LYS ALA SEQRES 12 A 398 MET GLU THR GLU ARG GLN LYS MET GLN LEU THR GLU SER SEQRES 13 A 398 TYR LYS LEU LEU GLU GLN MET THR ASN TYR ALA ASP SER SEQRES 14 A 398 PRO SER CYS LYS GLU LYS LYS VAL CYS SER LEU ALA ASP SEQRES 15 A 398 ALA LYS ASP THR PHE SER ALA ASP TYR GLU LYS GLU PRO SEQRES 16 A 398 GLY VAL SER GLY PRO LEU LYS VAL GLY ASN SER LEU VAL SEQRES 17 A 398 ASP ALA PHE THR LEU GLN TYR TYR GLU GLY PHE PRO ALA SEQRES 18 A 398 ASP GLN VAL ALA TRP GLY GLU ILE LYS THR ASP GLN GLN SEQRES 19 A 398 TRP ARG VAL LEU SER LYS LEU LYS ASN GLY TYR GLN ASP SEQRES 20 A 398 SER LEU PHE THR SER THR GLU VAL ALA GLN ASN VAL ALA SEQRES 21 A 398 LYS PRO LEU VAL LYS TYR ILE ASP LYS THR LEU VAL THR SEQRES 22 A 398 GLU GLN ALA LYS ALA PRO LYS ILE THR LEU LEU VAL GLY SEQRES 23 A 398 HIS ASP SER ASN ILE ALA SER LEU LEU THR ALA LEU ASP SEQRES 24 A 398 PHE LYS PRO TYR GLN LEU HIS ASP GLN GLN GLU ARG THR SEQRES 25 A 398 PRO ILE GLY GLY LYS ILE VAL PHE GLN ARG TRP HIS ASP SEQRES 26 A 398 LYS ASN ALA ASN GLN GLU LEU MET LYS ILE GLU TYR VAL SEQRES 27 A 398 TYR GLN SER SER GLU GLN LEU ARG ASN ALA SER VAL LEU SEQRES 28 A 398 SER LEU GLN SER PRO ALA GLN ARG VAL THR LEU GLU LEU SEQRES 29 A 398 LYS GLY CYS PRO VAL ASP ALA ASN GLY PHE CYS PRO VAL SEQRES 30 A 398 ASP LYS PHE ASN ALA VAL MET ASN ASN ALA ALA LYS ARG SEQRES 31 A 398 SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 398 SER PRO GLU GLY TYR GLN LEU GLU GLN VAL LEU ILE MET SEQRES 2 B 398 SER ARG ALA ASN LEU ARG ALA PRO LEU ALA ASN ASN GLY SEQRES 3 B 398 SER VAL LEU GLU GLN SER THR PRO LYS GLN TRP PRO GLU SEQRES 4 B 398 TRP GLU VAL PRO GLY GLY GLN LEU THR THR LYS GLY GLY SEQRES 5 B 398 VAL LEU GLU VAL TYR MET GLY HIS TYR MET ARG GLU TRP SEQRES 6 B 398 LEU ALA GLN GLN GLY MET VAL LYS THR GLY GLU CYS PRO SEQRES 7 B 398 ALA ALA ASP SER VAL TYR ALA TYR ALA ASN SER LEU GLN SEQRES 8 B 398 ARG THR VAL ALA THR ALA GLN PHE PHE ILE THR GLY ALA SEQRES 9 B 398 PHE PRO GLY CYS ASP VAL PRO VAL HIS HIS GLN GLU LYS SEQRES 10 B 398 MET GLY THR MET ASP PRO THR PHE ASN PRO VAL ILE THR SEQRES 11 B 398 ASP ASN SER PRO GLU PHE ARG GLU LYS ALA LEU LYS ALA SEQRES 12 B 398 MET GLU THR GLU ARG GLN LYS MET GLN LEU THR GLU SER SEQRES 13 B 398 TYR LYS LEU LEU GLU GLN MET THR ASN TYR ALA ASP SER SEQRES 14 B 398 PRO SER CYS LYS GLU LYS LYS VAL CYS SER LEU ALA ASP SEQRES 15 B 398 ALA LYS ASP THR PHE SER ALA ASP TYR GLU LYS GLU PRO SEQRES 16 B 398 GLY VAL SER GLY PRO LEU LYS VAL GLY ASN SER LEU VAL SEQRES 17 B 398 ASP ALA PHE THR LEU GLN TYR TYR GLU GLY PHE PRO ALA SEQRES 18 B 398 ASP GLN VAL ALA TRP GLY GLU ILE LYS THR ASP GLN GLN SEQRES 19 B 398 TRP ARG VAL LEU SER LYS LEU LYS ASN GLY TYR GLN ASP SEQRES 20 B 398 SER LEU PHE THR SER THR GLU VAL ALA GLN ASN VAL ALA SEQRES 21 B 398 LYS PRO LEU VAL LYS TYR ILE ASP LYS THR LEU VAL THR SEQRES 22 B 398 GLU GLN ALA LYS ALA PRO LYS ILE THR LEU LEU VAL GLY SEQRES 23 B 398 HIS ASP SER ASN ILE ALA SER LEU LEU THR ALA LEU ASP SEQRES 24 B 398 PHE LYS PRO TYR GLN LEU HIS ASP GLN GLN GLU ARG THR SEQRES 25 B 398 PRO ILE GLY GLY LYS ILE VAL PHE GLN ARG TRP HIS ASP SEQRES 26 B 398 LYS ASN ALA ASN GLN GLU LEU MET LYS ILE GLU TYR VAL SEQRES 27 B 398 TYR GLN SER SER GLU GLN LEU ARG ASN ALA SER VAL LEU SEQRES 28 B 398 SER LEU GLN SER PRO ALA GLN ARG VAL THR LEU GLU LEU SEQRES 29 B 398 LYS GLY CYS PRO VAL ASP ALA ASN GLY PHE CYS PRO VAL SEQRES 30 B 398 ASP LYS PHE ASN ALA VAL MET ASN ASN ALA ALA LYS ARG SEQRES 31 B 398 SER GLY HIS HIS HIS HIS HIS HIS HET IHP A 550 36 HET PO4 A 399 5 HET IHP B 551 36 HET CA B 399 1 HETNAM IHP INOSITOL HEXAKISPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETSYN IHP MYO-INOSITOL HEXAKISPHOSPHATE; INOSITOL 1,2,3,4,5,6- HETSYN 2 IHP HEXAKISPHOSPHATE FORMUL 3 IHP 2(C6 H18 O24 P6) FORMUL 4 PO4 O4 P 3- FORMUL 6 CA CA 2+ FORMUL 7 HOH *706(H2 O) HELIX 1 1 LEU A 22 ASN A 24 5 3 HELIX 2 2 ASN A 25 SER A 32 1 8 HELIX 3 3 THR A 48 GLN A 69 1 22 HELIX 4 4 LEU A 90 PHE A 105 1 16 HELIX 5 5 ASP A 122 ASN A 126 5 5 HELIX 6 6 SER A 133 LYS A 150 1 18 HELIX 7 7 LEU A 153 THR A 164 1 12 HELIX 8 8 ASN A 165 ASP A 168 5 4 HELIX 9 9 SER A 169 GLU A 174 1 6 HELIX 10 10 GLY A 199 GLY A 218 1 20 HELIX 11 11 PRO A 220 GLU A 228 5 9 HELIX 12 12 THR A 231 THR A 251 1 21 HELIX 13 13 SER A 252 ALA A 260 1 9 HELIX 14 14 ALA A 260 VAL A 272 1 13 HELIX 15 15 GLU A 274 ALA A 278 5 5 HELIX 16 16 HIS A 287 LEU A 298 1 12 HELIX 17 17 SER A 341 ASN A 347 1 7 HELIX 18 18 VAL A 377 ALA A 388 1 12 HELIX 19 19 SER B 27 SER B 32 1 6 HELIX 20 20 THR B 48 GLN B 69 1 22 HELIX 21 21 LEU B 90 PHE B 105 1 16 HELIX 22 22 ASP B 122 ASN B 126 5 5 HELIX 23 23 SER B 133 LYS B 150 1 18 HELIX 24 24 LEU B 153 ASN B 165 1 13 HELIX 25 25 TYR B 166 ASP B 168 5 3 HELIX 26 26 SER B 169 LYS B 176 1 8 HELIX 27 27 GLY B 199 GLY B 218 1 20 HELIX 28 28 PRO B 220 GLU B 228 5 9 HELIX 29 29 THR B 231 THR B 251 1 21 HELIX 30 30 SER B 252 ALA B 260 1 9 HELIX 31 31 ALA B 260 VAL B 272 1 13 HELIX 32 32 HIS B 287 LEU B 298 1 12 HELIX 33 33 ASN B 327 GLN B 330 5 4 HELIX 34 34 SER B 341 ALA B 348 1 8 HELIX 35 35 VAL B 377 LYS B 389 1 13 SHEET 1 A 7 VAL A 112 HIS A 113 0 SHEET 2 A 7 VAL A 83 ALA A 87 1 N ALA A 85 O HIS A 113 SHEET 3 A 7 ILE A 281 GLY A 286 1 O ILE A 281 N TYR A 84 SHEET 4 A 7 TYR A 5 ARG A 15 1 N ILE A 12 O LEU A 284 SHEET 5 A 7 LYS A 317 ASP A 325 -1 O PHE A 320 N LEU A 11 SHEET 6 A 7 GLN A 330 TYR A 339 -1 O GLU A 336 N VAL A 319 SHEET 7 A 7 GLN A 358 LEU A 362 -1 O VAL A 360 N TYR A 337 SHEET 1 B 7 VAL A 112 HIS A 113 0 SHEET 2 B 7 VAL A 83 ALA A 87 1 N ALA A 85 O HIS A 113 SHEET 3 B 7 ILE A 281 GLY A 286 1 O ILE A 281 N TYR A 84 SHEET 4 B 7 TYR A 5 ARG A 15 1 N ILE A 12 O LEU A 284 SHEET 5 B 7 LYS A 317 ASP A 325 -1 O PHE A 320 N LEU A 11 SHEET 6 B 7 GLN A 330 TYR A 339 -1 O GLU A 336 N VAL A 319 SHEET 7 B 7 CYS A 375 PRO A 376 -1 O CYS A 375 N MET A 333 SHEET 1 C 2 THR A 186 SER A 188 0 SHEET 2 C 2 GLY A 196 SER A 198 -1 O SER A 198 N THR A 186 SHEET 1 D 7 VAL B 112 HIS B 113 0 SHEET 2 D 7 VAL B 83 ALA B 87 1 N ALA B 85 O HIS B 113 SHEET 3 D 7 ILE B 281 GLY B 286 1 O LEU B 283 N TYR B 86 SHEET 4 D 7 GLN B 6 ARG B 15 1 N SER B 14 O GLY B 286 SHEET 5 D 7 LYS B 317 HIS B 324 -1 O HIS B 324 N GLN B 6 SHEET 6 D 7 LEU B 332 TYR B 339 -1 O LEU B 332 N TRP B 323 SHEET 7 D 7 GLN B 358 LEU B 362 -1 O GLN B 358 N TYR B 339 SHEET 1 E 7 VAL B 112 HIS B 113 0 SHEET 2 E 7 VAL B 83 ALA B 87 1 N ALA B 85 O HIS B 113 SHEET 3 E 7 ILE B 281 GLY B 286 1 O LEU B 283 N TYR B 86 SHEET 4 E 7 GLN B 6 ARG B 15 1 N SER B 14 O GLY B 286 SHEET 5 E 7 LYS B 317 HIS B 324 -1 O HIS B 324 N GLN B 6 SHEET 6 E 7 LEU B 332 TYR B 339 -1 O LEU B 332 N TRP B 323 SHEET 7 E 7 CYS B 375 PRO B 376 -1 O CYS B 375 N MET B 333 SHEET 1 F 2 THR B 186 SER B 188 0 SHEET 2 F 2 GLY B 196 SER B 198 -1 O GLY B 196 N SER B 188 SSBOND 1 CYS A 77 CYS A 108 1555 1555 2.07 SSBOND 2 CYS A 172 CYS A 178 1555 1555 2.08 SSBOND 3 CYS A 367 CYS A 375 1555 1555 2.04 SSBOND 4 CYS B 77 CYS B 108 1555 1555 2.11 SSBOND 5 CYS B 172 CYS B 178 1555 1555 2.07 SSBOND 6 CYS B 367 CYS B 375 1555 1555 2.03 SITE 1 AC1 15 ARG A 15 ARG A 19 LEU A 22 ARG A 92 SITE 2 AC1 15 MET A 121 GLU A 194 ASP A 209 TYR A 245 SITE 3 AC1 15 HIS A 287 ASP A 288 SER A 289 HOH A 442 SITE 4 AC1 15 HOH A 481 HOH A 501 HOH A 653 SITE 1 AC2 5 LYS A 50 GLU A 217 GLY A 218 HOH A 459 SITE 2 AC2 5 HOH A 612 SITE 1 AC3 13 ARG B 15 ARG B 19 LEU B 90 ARG B 92 SITE 2 AC3 13 MET B 121 GLU B 194 ASN B 205 ASP B 209 SITE 3 AC3 13 GLN B 246 HIS B 287 ASP B 288 SER B 289 SITE 4 AC3 13 HOH B 483 SITE 1 AC4 2 MET B 151 LEU B 153 CRYST1 151.079 151.079 86.644 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006619 0.003822 0.000000 0.00000 SCALE2 0.000000 0.007643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011541 0.00000