HEADER RECOMBINATION 05-JUL-10 3NTU TITLE RADA RECOMBINASE D302K MUTANT IN COMPLEX WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA REPAIR AND RECOMBINATION PROTEIN RADA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 4-322; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS VOLTAE; SOURCE 3 ORGANISM_TAXID: 523842; SOURCE 4 STRAIN: DSM 1537 / PS; SOURCE 5 GENE: RADA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ATPASE, RECOMBINASE, ATP COMPLEX, ACTIVE CONFORMATION, RECA, RAD51, KEYWDS 2 DMC1, RADA, RECOMBINATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.LUO REVDAT 5 06-SEP-23 3NTU 1 REMARK SEQADV LINK REVDAT 4 08-NOV-17 3NTU 1 REMARK REVDAT 3 17-OCT-12 3NTU 1 JRNL REVDAT 2 01-FEB-12 3NTU 1 JRNL REVDAT 1 27-JUL-11 3NTU 0 JRNL AUTH R.AMUNUGAMA,Y.HE,S.WILLCOX,R.A.FORTIES,K.S.SHIM,R.BUNDSCHUH, JRNL AUTH 2 Y.LUO,J.GRIFFITH,R.FISHEL JRNL TITL RAD51 PROTEIN ATP CAP REGULATES NUCLEOPROTEIN FILAMENT JRNL TITL 2 STABILITY. JRNL REF J.BIOL.CHEM. V. 287 8724 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22275364 JRNL DOI 10.1074/JBC.M111.239426 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 31633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1714 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE : 0.3430 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 56 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.730 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6-8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33350 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.27800 REMARK 200 R SYM FOR SHELL (I) : 0.27800 REMARK 200 FOR SHELL : 10.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1T4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2MM AMP-PNP, 4-5% PEG 3350, 50 MM REMARK 280 MGCL2, 0.4 M NACL, 50 MM TRIS-HCL AND 14% SUCROSE, PH 6-8, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.77333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.54667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.16000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 86.93333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.38667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN FUNCTIONS AS A HELICAL FILAMENT OF INFINITE REMARK 300 SIZE. REMARK 350 REPRESENTS ONE HEXAMERIC SEGMENT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 127.45500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 73.58618 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 34.77333 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 147.17236 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 69.54667 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 84.97000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 147.17236 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 52.16000 REMARK 350 BIOMT1 5 0.500000 0.866025 0.000000 -42.48500 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 73.58618 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 86.93333 REMARK 350 BIOMT1 6 0.500000 -0.866025 0.000000 84.97000 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 17.38667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 223 REMARK 465 ARG A 224 REMARK 465 PRO A 262 REMARK 465 ASP A 263 REMARK 465 ALA A 264 REMARK 465 PHE A 265 REMARK 465 PHE A 266 REMARK 465 GLY A 267 REMARK 465 MET A 268 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 238 CG MET A 238 SD -0.157 REMARK 500 CYS A 250 CB CYS A 250 SG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 244 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 83 -5.89 83.92 REMARK 500 ALA A 228 -45.55 -175.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 98 O REMARK 620 2 ASP A 246 OD1 91.6 REMARK 620 3 HOH A 604 O 96.5 88.1 REMARK 620 4 HOH A 605 O 174.5 91.3 88.3 REMARK 620 5 HOH A 606 O 87.9 90.6 175.4 87.4 REMARK 620 6 HOH A 607 O 88.1 174.1 97.8 88.5 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 112 OG1 REMARK 620 2 ANP A 401 O2G 169.4 REMARK 620 3 ANP A 401 O1B 94.8 93.5 REMARK 620 4 HOH A 601 O 84.3 88.3 95.4 REMARK 620 5 HOH A 602 O 90.1 96.6 90.0 172.5 REMARK 620 6 HOH A 603 O 85.1 87.2 175.5 89.1 85.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 505 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 164 O REMARK 620 2 GLU A 164 OE2 79.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1T4G RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN IN COMPLEX WITH AMP-PNP REMARK 900 RELATED ID: 2I1Q RELATED DB: PDB REMARK 900 WILD-TYPE PROTEIN IN COMPLEX WITH AMP-PNP AND CALCIUM DBREF 3NTU A 4 322 UNP O73948 RADA_METVO 4 322 SEQADV 3NTU GLY A 4 UNP O73948 ASN 4 ENGINEERED MUTATION SEQADV 3NTU LYS A 302 UNP O73948 ASP 302 ENGINEERED MUTATION SEQRES 1 A 319 GLY LEU THR ASP LEU PRO GLY VAL GLY PRO SER THR ALA SEQRES 2 A 319 GLU LYS LEU VAL GLU ALA GLY TYR ILE ASP PHE MET LYS SEQRES 3 A 319 ILE ALA THR ALA THR VAL GLY GLU LEU THR ASP ILE GLU SEQRES 4 A 319 GLY ILE SER GLU LYS ALA ALA ALA LYS MET ILE MET GLY SEQRES 5 A 319 ALA ARG ASP LEU CYS ASP LEU GLY PHE LYS SER GLY ILE SEQRES 6 A 319 ASP LEU LEU LYS GLN ARG SER THR VAL TRP LYS LEU SER SEQRES 7 A 319 THR SER SER SER GLU LEU ASP SER VAL LEU GLY GLY GLY SEQRES 8 A 319 LEU GLU SER GLN SER VAL THR GLU PHE ALA GLY VAL PHE SEQRES 9 A 319 GLY SER GLY LYS THR GLN ILE MET HIS GLN SER CYS VAL SEQRES 10 A 319 ASN LEU GLN ASN PRO GLU PHE LEU PHE TYR ASP GLU GLU SEQRES 11 A 319 ALA VAL SER LYS GLY GLU VAL ALA GLN PRO LYS ALA VAL SEQRES 12 A 319 TYR ILE ASP THR GLU GLY THR PHE ARG PRO GLU ARG ILE SEQRES 13 A 319 MET GLN MET ALA GLU HIS ALA GLY ILE ASP GLY GLN THR SEQRES 14 A 319 VAL LEU ASP ASN THR PHE VAL ALA ARG ALA TYR ASN SER SEQRES 15 A 319 ASP MET GLN MET LEU PHE ALA GLU LYS ILE GLU ASP LEU SEQRES 16 A 319 ILE GLN GLU GLY ASN ASN ILE LYS LEU VAL VAL ILE ASP SEQRES 17 A 319 SER LEU THR SER THR PHE ARG ASN GLU TYR THR GLY ARG SEQRES 18 A 319 GLY LYS LEU ALA GLU ARG GLN GLN LYS LEU GLY ARG HIS SEQRES 19 A 319 MET ALA THR LEU ASN LYS LEU ALA ASP LEU PHE ASN CYS SEQRES 20 A 319 VAL VAL LEU VAL THR ASN GLN VAL SER ALA LYS PRO ASP SEQRES 21 A 319 ALA PHE PHE GLY MET ALA GLU GLN ALA ILE GLY GLY HIS SEQRES 22 A 319 ILE VAL GLY HIS ALA ALA THR PHE ARG PHE PHE VAL ARG SEQRES 23 A 319 LYS GLY LYS GLY ASP LYS ARG VAL ALA LYS LEU TYR LYS SEQRES 24 A 319 SER PRO HIS LEU PRO ASP ALA GLU ALA ILE PHE ARG ILE SEQRES 25 A 319 THR GLU LYS GLY ILE GLN ASP HET ANP A 401 31 HET MG A 501 1 HET MG A 502 1 HET NA A 505 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 NA NA 1+ FORMUL 6 HOH *92(H2 O) HELIX 1 1 GLY A 4 LEU A 8 5 5 HELIX 2 2 GLY A 12 ALA A 22 1 11 HELIX 3 3 ASP A 26 THR A 32 1 7 HELIX 4 4 THR A 34 ASP A 40 1 7 HELIX 5 5 SER A 45 CYS A 60 1 16 HELIX 6 6 GLY A 67 SER A 75 1 9 HELIX 7 7 SER A 84 LEU A 91 1 8 HELIX 8 8 GLY A 110 LEU A 122 1 13 HELIX 9 9 GLN A 123 GLU A 126 5 4 HELIX 10 10 ARG A 155 GLY A 167 1 13 HELIX 11 11 ASP A 169 ASN A 176 1 8 HELIX 12 12 ASN A 184 LYS A 194 1 11 HELIX 13 13 LYS A 194 GLU A 201 1 8 HELIX 14 14 THR A 214 TYR A 221 1 8 HELIX 15 15 ALA A 228 PHE A 248 1 21 HELIX 16 16 GLY A 274 ALA A 282 1 9 SHEET 1 A 3 LEU A 95 GLU A 96 0 SHEET 2 A 3 LYS A 79 LEU A 80 -1 N LEU A 80 O LEU A 95 SHEET 3 A 3 LEU A 128 PHE A 129 -1 O PHE A 129 N LYS A 79 SHEET 1 B 9 THR A 177 ARG A 181 0 SHEET 2 B 9 PRO A 143 ASP A 149 1 N TYR A 147 O PHE A 178 SHEET 3 B 9 ASN A 204 ASP A 211 1 O VAL A 209 N ILE A 148 SHEET 4 B 9 VAL A 251 ASN A 256 1 O LEU A 253 N VAL A 208 SHEET 5 B 9 SER A 99 GLY A 105 1 N THR A 101 O VAL A 252 SHEET 6 B 9 PHE A 284 LYS A 290 1 O PHE A 284 N GLU A 102 SHEET 7 B 9 LYS A 295 LYS A 302 -1 O LYS A 299 N PHE A 287 SHEET 8 B 9 ALA A 309 THR A 316 -1 O PHE A 313 N ARG A 296 SHEET 9 B 9 GLY A 319 GLN A 321 -1 O GLY A 319 N THR A 316 SHEET 1 C 2 VAL A 258 SER A 259 0 SHEET 2 C 2 GLN A 271 ALA A 272 -1 O GLN A 271 N SER A 259 LINK O GLN A 98 MG MG A 502 1555 1555 2.02 LINK OG1 THR A 112 MG MG A 501 1555 1555 2.18 LINK O GLU A 164 NA NA A 505 1555 1555 2.33 LINK OE2 GLU A 164 NA NA A 505 1555 1555 2.46 LINK OD1 ASP A 246 MG MG A 502 1555 1555 2.08 LINK O2G ANP A 401 MG MG A 501 1555 1555 2.00 LINK O1B ANP A 401 MG MG A 501 1555 1555 2.00 LINK MG MG A 501 O HOH A 601 1555 1555 2.13 LINK MG MG A 501 O HOH A 602 1555 1555 2.15 LINK MG MG A 501 O HOH A 603 1555 1555 2.11 LINK MG MG A 502 O HOH A 604 1555 1555 2.06 LINK MG MG A 502 O HOH A 605 1555 1555 2.20 LINK MG MG A 502 O HOH A 606 1555 1555 2.07 LINK MG MG A 502 O HOH A 607 1555 1555 1.93 CISPEP 1 ASP A 211 SER A 212 0 3.11 SITE 1 AC1 32 PHE A 107 GLY A 108 SER A 109 GLY A 110 SITE 2 AC1 32 LYS A 111 THR A 112 GLN A 113 GLU A 151 SITE 3 AC1 32 ARG A 158 GLN A 161 HIS A 280 ARG A 296 SITE 4 AC1 32 LYS A 302 SER A 303 PRO A 304 HIS A 305 SITE 5 AC1 32 LEU A 306 PRO A 307 ASP A 308 THR A 316 SITE 6 AC1 32 GLU A 317 MG A 501 HOH A 601 HOH A 602 SITE 7 AC1 32 HOH A 603 HOH A 609 HOH A 617 HOH A 623 SITE 8 AC1 32 HOH A 641 HOH A 660 HOH A 662 HOH A 691 SITE 1 AC2 5 THR A 112 ANP A 401 HOH A 601 HOH A 602 SITE 2 AC2 5 HOH A 603 SITE 1 AC3 6 GLN A 98 ASP A 246 HOH A 604 HOH A 605 SITE 2 AC3 6 HOH A 606 HOH A 607 SITE 1 AC4 4 THR A 6 LEU A 8 VAL A 11 GLU A 164 CRYST1 84.970 84.970 104.320 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011769 0.006795 0.000000 0.00000 SCALE2 0.000000 0.013590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009586 0.00000