HEADER PROTEIN BINDING 05-JUL-10 3NTW TITLE STRUCTURE OF THE MLLE DOMAIN OF EDD IN COMPLEX WITH A PAM2 PEPTIDE TITLE 2 FROM PAIP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UBR5; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 515-574, MLLE DOMAIN; COMPND 5 SYNONYM: E3 UBIQUITIN-PROTEIN LIGASE, HECT DOMAIN-CONTAINING 1, COMPND 6 HYPERPLASTIC DISCS PROTEIN HOMOLOG, 100 KDA PROTEIN; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 1; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: UNP RESIDUES 123-144, PAM2 MOTIF; COMPND 13 SYNONYM: POLY(A)-BINDING PROTEIN-INTERACTING PROTEIN 1, PABP- COMPND 14 INTERACTING PROTEIN 1, PAIP-1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: UBR5, DD5, EDD, EDD1, HYD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: CHEMICALLY SYNTHESIZED PEPTIDE KEYWDS PROTEIN-PROTEIN COMPLEX, MLLE DOMAIN, PABC DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.KOZLOV,K.GEHRING REVDAT 3 06-SEP-23 3NTW 1 SEQADV REVDAT 2 03-OCT-18 3NTW 1 JRNL REVDAT 1 06-JUL-11 3NTW 0 JRNL AUTH J.MUNOZ-ESCOBAR,E.MATTA-CAMACHO,G.KOZLOV,K.GEHRING JRNL TITL THE MLLE DOMAIN OF THE UBIQUITIN LIGASE UBR5 BINDS TO ITS JRNL TITL 2 CATALYTIC DOMAIN TO REGULATE SUBSTRATE BINDING. JRNL REF J. BIOL. CHEM. V. 290 22841 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26224628 JRNL DOI 10.1074/JBC.M115.672246 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 6999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 503 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 16 REMARK 3 BIN FREE R VALUE : 0.4180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1094 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.305 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.522 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.937 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.867 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1118 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1510 ; 2.060 ; 2.024 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 141 ; 5.508 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 44 ;39.680 ;23.409 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 203 ;22.017 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;24.092 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 178 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 816 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 500 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 766 ; 0.336 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 28 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.355 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 732 ; 0.670 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 1.199 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 420 ; 2.460 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 365 ; 4.184 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2382 A 2436 3 REMARK 3 1 C 2382 C 2436 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 219 ; 0.16 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 195 ; 0.66 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 219 ; 0.16 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 195 ; 1.57 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 127 B 138 3 REMARK 3 1 D 127 D 138 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 B (A): 48 ; 0.09 ; 0.05 REMARK 3 LOOSE POSITIONAL 2 B (A): 47 ; 0.82 ; 5.00 REMARK 3 TIGHT THERMAL 2 B (A**2): 48 ; 0.14 ; 0.50 REMARK 3 LOOSE THERMAL 2 B (A**2): 47 ; 1.89 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2377 A 2398 REMARK 3 ORIGIN FOR THE GROUP (A): -31.1476 -31.9581 1.7666 REMARK 3 T TENSOR REMARK 3 T11: 0.4835 T22: 0.3789 REMARK 3 T33: 0.4704 T12: 0.1415 REMARK 3 T13: 0.0650 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 4.8242 L22: 5.7047 REMARK 3 L33: 2.1475 L12: 1.8874 REMARK 3 L13: -1.8199 L23: 1.9816 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: 0.1053 S13: -0.2092 REMARK 3 S21: 0.6712 S22: -0.1436 S23: 0.0983 REMARK 3 S31: 0.3405 S32: 0.1002 S33: 0.3059 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2399 A 2426 REMARK 3 ORIGIN FOR THE GROUP (A): -25.0877 -31.1492 -4.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.4113 T22: 0.4778 REMARK 3 T33: 0.4133 T12: 0.1160 REMARK 3 T13: 0.0231 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 6.0147 L22: 7.9203 REMARK 3 L33: 4.4794 L12: -0.0428 REMARK 3 L13: -3.6264 L23: 4.2874 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: 0.0873 S13: -0.0402 REMARK 3 S21: 0.1724 S22: -0.1382 S23: -0.2643 REMARK 3 S31: -0.1200 S32: 0.2802 S33: 0.1292 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2427 A 2437 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9549 -20.7356 -1.8013 REMARK 3 T TENSOR REMARK 3 T11: 0.4896 T22: 0.5711 REMARK 3 T33: 0.4860 T12: 0.0353 REMARK 3 T13: 0.0399 T23: -0.0442 REMARK 3 L TENSOR REMARK 3 L11: 7.3851 L22: 4.1319 REMARK 3 L33: 2.3598 L12: 4.4981 REMARK 3 L13: 3.5777 L23: 3.1131 REMARK 3 S TENSOR REMARK 3 S11: -0.5585 S12: 0.3515 S13: 0.5006 REMARK 3 S21: -0.3861 S22: 0.5033 S23: -1.0713 REMARK 3 S31: -0.8469 S32: 1.3928 S33: 0.0552 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 127 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1008 -20.1212 -7.7347 REMARK 3 T TENSOR REMARK 3 T11: 0.5571 T22: 0.6024 REMARK 3 T33: 0.4566 T12: 0.0990 REMARK 3 T13: -0.0366 T23: -0.1665 REMARK 3 L TENSOR REMARK 3 L11: 35.5027 L22: 19.7195 REMARK 3 L33: 27.1402 L12: -10.9573 REMARK 3 L13: -20.7798 L23: -9.2297 REMARK 3 S TENSOR REMARK 3 S11: -2.5306 S12: 2.7016 S13: 0.6418 REMARK 3 S21: -0.6994 S22: 1.3176 S23: -0.3146 REMARK 3 S31: 0.1570 S32: 0.1080 S33: 1.2130 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 134 B 138 REMARK 3 ORIGIN FOR THE GROUP (A): -37.6471 -26.6646 2.4932 REMARK 3 T TENSOR REMARK 3 T11: 0.6093 T22: 0.3355 REMARK 3 T33: 0.4950 T12: 0.2064 REMARK 3 T13: 0.2553 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 42.3594 L22: 2.7416 REMARK 3 L33: 0.0195 L12: 10.7764 REMARK 3 L13: 0.9090 L23: 0.2313 REMARK 3 S TENSOR REMARK 3 S11: 0.1311 S12: -0.9951 S13: 0.3506 REMARK 3 S21: 1.2871 S22: -0.2610 S23: 1.6286 REMARK 3 S31: -0.2712 S32: 0.1681 S33: 0.1299 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2382 C 2395 REMARK 3 ORIGIN FOR THE GROUP (A): -44.3257 -13.1633 5.3861 REMARK 3 T TENSOR REMARK 3 T11: 0.5809 T22: 0.2071 REMARK 3 T33: 0.5166 T12: 0.0436 REMARK 3 T13: 0.0787 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 7.0580 L22: 2.6629 REMARK 3 L33: 13.6849 L12: -2.0256 REMARK 3 L13: -0.0239 L23: 5.3440 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: 0.5392 S13: -0.7250 REMARK 3 S21: 0.3375 S22: -0.4151 S23: 0.4003 REMARK 3 S31: 0.4074 S32: -0.5555 S33: 0.5331 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2396 C 2426 REMARK 3 ORIGIN FOR THE GROUP (A): -39.7418 -9.0763 9.9998 REMARK 3 T TENSOR REMARK 3 T11: 0.5885 T22: 0.2914 REMARK 3 T33: 0.4009 T12: 0.0337 REMARK 3 T13: 0.0208 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 4.0454 L22: 3.2497 REMARK 3 L33: 4.6762 L12: -0.3483 REMARK 3 L13: -3.0084 L23: 1.2304 REMARK 3 S TENSOR REMARK 3 S11: 0.0873 S12: 0.1264 S13: -0.0956 REMARK 3 S21: 0.0410 S22: -0.1634 S23: -0.0072 REMARK 3 S31: 0.1070 S32: 0.0867 S33: 0.0761 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2427 C 2437 REMARK 3 ORIGIN FOR THE GROUP (A): -29.8912 -7.7915 6.5119 REMARK 3 T TENSOR REMARK 3 T11: 0.5103 T22: 0.3154 REMARK 3 T33: 0.4262 T12: -0.0277 REMARK 3 T13: -0.0056 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 13.4506 L22: 22.8323 REMARK 3 L33: 13.5034 L12: -3.6321 REMARK 3 L13: -13.3463 L23: 5.9901 REMARK 3 S TENSOR REMARK 3 S11: 0.3089 S12: -0.6665 S13: 0.7662 REMARK 3 S21: -0.0435 S22: 0.3199 S23: -1.0238 REMARK 3 S31: -0.3967 S32: 1.4446 S33: -0.6288 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 126 D 133 REMARK 3 ORIGIN FOR THE GROUP (A): -30.1261 -13.6164 14.6128 REMARK 3 T TENSOR REMARK 3 T11: 0.7002 T22: 0.4688 REMARK 3 T33: 0.3845 T12: 0.0990 REMARK 3 T13: 0.0567 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 12.7244 L22: 16.1008 REMARK 3 L33: 1.3969 L12: -10.9148 REMARK 3 L13: 4.0814 L23: -4.2698 REMARK 3 S TENSOR REMARK 3 S11: 0.2568 S12: -0.9533 S13: 0.3649 REMARK 3 S21: 2.1748 S22: -0.4139 S23: -0.3059 REMARK 3 S31: 0.2344 S32: 1.1564 S33: 0.1571 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 134 D 139 REMARK 3 ORIGIN FOR THE GROUP (A): -40.9770 -22.8156 7.1939 REMARK 3 T TENSOR REMARK 3 T11: 0.8256 T22: 0.2100 REMARK 3 T33: 0.5807 T12: 0.0205 REMARK 3 T13: 0.1081 T23: -0.1097 REMARK 3 L TENSOR REMARK 3 L11: 7.8282 L22: 14.5810 REMARK 3 L33: 20.0586 L12: 3.0145 REMARK 3 L13: -4.1876 L23: -0.5508 REMARK 3 S TENSOR REMARK 3 S11: 0.6047 S12: 1.0937 S13: -0.1826 REMARK 3 S21: 0.7033 S22: -0.3488 S23: 0.4449 REMARK 3 S31: 0.4574 S32: -0.1655 S33: -0.2559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060274. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6999 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1I2T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M AMMONIUM SULFATE, 0.2 M LITHIUM REMARK 280 SULFATE, 10% GLYCEROL AND 0.1 M TRIS-HCL, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.64533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.29067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.64533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.29067 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 27.64533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 55.29067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 27.64533 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 55.29067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2374 REMARK 465 PRO A 2375 REMARK 465 LEU A 2376 REMARK 465 HIS A 2438 REMARK 465 VAL B 123 REMARK 465 LEU B 124 REMARK 465 MET B 125 REMARK 465 SER B 126 REMARK 465 GLY B 139 REMARK 465 TYR B 140 REMARK 465 SER B 141 REMARK 465 SER B 142 REMARK 465 SER B 143 REMARK 465 TYR B 144 REMARK 465 GLY C 2374 REMARK 465 PRO C 2375 REMARK 465 LEU C 2376 REMARK 465 GLY C 2377 REMARK 465 SER C 2378 REMARK 465 HIS C 2379 REMARK 465 ARG C 2380 REMARK 465 GLN C 2381 REMARK 465 HIS C 2438 REMARK 465 VAL D 123 REMARK 465 LEU D 124 REMARK 465 MET D 125 REMARK 465 TYR D 140 REMARK 465 SER D 141 REMARK 465 SER D 142 REMARK 465 SER D 143 REMARK 465 TYR D 144 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 8 O HOH C 3 6554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 137 -179.71 -59.75 REMARK 500 LYS D 127 71.75 -105.54 REMARK 500 ALA D 132 150.80 -45.53 REMARK 500 PRO D 137 -178.38 -65.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 3NTW A 2379 2438 UNP Q62671 UBR5_RAT 515 574 DBREF 3NTW B 123 144 UNP Q9H074 PAIP1_HUMAN 123 144 DBREF 3NTW C 2379 2438 UNP Q62671 UBR5_RAT 515 574 DBREF 3NTW D 123 144 UNP Q9H074 PAIP1_HUMAN 123 144 SEQADV 3NTW GLY A 2374 UNP Q62671 EXPRESSION TAG SEQADV 3NTW PRO A 2375 UNP Q62671 EXPRESSION TAG SEQADV 3NTW LEU A 2376 UNP Q62671 EXPRESSION TAG SEQADV 3NTW GLY A 2377 UNP Q62671 EXPRESSION TAG SEQADV 3NTW SER A 2378 UNP Q62671 EXPRESSION TAG SEQADV 3NTW GLY C 2374 UNP Q62671 EXPRESSION TAG SEQADV 3NTW PRO C 2375 UNP Q62671 EXPRESSION TAG SEQADV 3NTW LEU C 2376 UNP Q62671 EXPRESSION TAG SEQADV 3NTW GLY C 2377 UNP Q62671 EXPRESSION TAG SEQADV 3NTW SER C 2378 UNP Q62671 EXPRESSION TAG SEQRES 1 A 65 GLY PRO LEU GLY SER HIS ARG GLN ALA LEU GLY GLU ARG SEQRES 2 A 65 LEU TYR PRO ARG VAL GLN ALA MET GLN PRO ALA PHE ALA SEQRES 3 A 65 SER LYS ILE THR GLY MET LEU LEU GLU LEU SER PRO ALA SEQRES 4 A 65 GLN LEU LEU LEU LEU LEU ALA SER GLU ASP SER LEU ARG SEQRES 5 A 65 ALA ARG VAL GLU GLU ALA MET GLU LEU ILE VAL ALA HIS SEQRES 1 B 22 VAL LEU MET SER LYS LEU SER VAL ASN ALA PRO GLU PHE SEQRES 2 B 22 TYR PRO SER GLY TYR SER SER SER TYR SEQRES 1 C 65 GLY PRO LEU GLY SER HIS ARG GLN ALA LEU GLY GLU ARG SEQRES 2 C 65 LEU TYR PRO ARG VAL GLN ALA MET GLN PRO ALA PHE ALA SEQRES 3 C 65 SER LYS ILE THR GLY MET LEU LEU GLU LEU SER PRO ALA SEQRES 4 C 65 GLN LEU LEU LEU LEU LEU ALA SER GLU ASP SER LEU ARG SEQRES 5 C 65 ALA ARG VAL GLU GLU ALA MET GLU LEU ILE VAL ALA HIS SEQRES 1 D 22 VAL LEU MET SER LYS LEU SER VAL ASN ALA PRO GLU PHE SEQRES 2 D 22 TYR PRO SER GLY TYR SER SER SER TYR FORMUL 5 HOH *8(H2 O) HELIX 1 1 GLY A 2377 ALA A 2393 1 17 HELIX 2 2 GLN A 2395 ALA A 2397 5 3 HELIX 3 3 PHE A 2398 LEU A 2407 1 10 HELIX 4 4 SER A 2410 SER A 2420 1 11 HELIX 5 5 SER A 2420 VAL A 2436 1 17 HELIX 6 6 ALA C 2382 GLN C 2395 1 14 HELIX 7 7 PHE C 2398 LEU C 2407 1 10 HELIX 8 8 SER C 2410 SER C 2420 1 11 HELIX 9 9 SER C 2420 VAL C 2436 1 17 CRYST1 95.794 95.794 82.936 90.00 90.00 120.00 P 64 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010439 0.006027 0.000000 0.00000 SCALE2 0.000000 0.012054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012057 0.00000