HEADER METAL TRANSPORT 06-JUL-10 3NU1 TITLE STRUCTURE OF HOLO FORM OF A PERIPLASMIC HEME BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMIN-BINDING PERIPLASMIC PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 360102; SOURCE 4 STRAIN: ANTIQUA; SOURCE 5 GENE: HMUT, Y0541, YPA_4001, YPO0281, YP_0436; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORT PROTEIN, ALPHA BETA PROTEIN, RIGID HELICAL BACKBONE, KEYWDS 2 SUBSTRATE-BOUND, IRON TRANSPORT, HEME TRANSPORT, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR D.MATTLE,B.A.GOETZ,J.S.WOO,K.P.LOCHER REVDAT 3 20-MAR-24 3NU1 1 REMARK LINK REVDAT 2 09-OCT-13 3NU1 1 JRNL VERSN REVDAT 1 13-OCT-10 3NU1 0 JRNL AUTH D.MATTLE,A.ZELTINA,J.S.WOO,B.A.GOETZ,K.P.LOCHER JRNL TITL TWO STACKED HEME MOLECULES IN THE BINDING POCKET OF THE JRNL TITL 2 PERIPLASMIC HEME-BINDING PROTEIN HMUT FROM YERSINIA PESTIS. JRNL REF J.MOL.BIOL. V. 404 220 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20888343 JRNL DOI 10.1016/J.JMB.2010.09.005 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.390 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6467 - 5.3765 1.00 2530 172 0.1632 0.1902 REMARK 3 2 5.3765 - 4.2716 1.00 2354 161 0.1590 0.2145 REMARK 3 3 4.2716 - 3.7328 1.00 2305 158 0.1800 0.2331 REMARK 3 4 3.7328 - 3.3920 1.00 2304 157 0.1990 0.2375 REMARK 3 5 3.3920 - 3.1492 1.00 2263 155 0.2231 0.2400 REMARK 3 6 3.1492 - 2.9637 1.00 2254 154 0.2402 0.3017 REMARK 3 7 2.9637 - 2.8154 1.00 2261 154 0.2579 0.3259 REMARK 3 8 2.8154 - 2.6929 1.00 2243 153 0.2507 0.3222 REMARK 3 9 2.6929 - 2.5893 1.00 2234 152 0.2281 0.2948 REMARK 3 10 2.5893 - 2.5000 1.00 2227 152 0.2476 0.2947 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 59.68 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.53550 REMARK 3 B22 (A**2) : 2.53550 REMARK 3 B33 (A**2) : -5.07110 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3998 REMARK 3 ANGLE : 0.998 5482 REMARK 3 CHIRALITY : 0.050 624 REMARK 3 PLANARITY : 0.004 694 REMARK 3 DIHEDRAL : 15.254 1456 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 26:279) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9316 56.8012 5.8291 REMARK 3 T TENSOR REMARK 3 T11: 0.2701 T22: 0.5681 REMARK 3 T33: 0.4219 T12: -0.0514 REMARK 3 T13: 0.0576 T23: -0.1044 REMARK 3 L TENSOR REMARK 3 L11: 1.7519 L22: 2.5564 REMARK 3 L33: 1.7551 L12: 0.8956 REMARK 3 L13: 0.0029 L23: 0.6849 REMARK 3 S TENSOR REMARK 3 S11: 0.0438 S12: 0.5158 S13: 0.0404 REMARK 3 S21: -0.2622 S22: 0.2110 S23: 0.2545 REMARK 3 S31: -0.2005 S32: -0.1281 S33: -0.1911 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 26:279) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4451 19.8190 -17.7649 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.7764 REMARK 3 T33: 0.7659 T12: 0.0346 REMARK 3 T13: -0.0938 T23: -0.5896 REMARK 3 L TENSOR REMARK 3 L11: 2.7739 L22: 0.9181 REMARK 3 L33: 1.8207 L12: -0.2138 REMARK 3 L13: 0.6327 L23: -0.2503 REMARK 3 S TENSOR REMARK 3 S11: 0.4329 S12: 0.5838 S13: -0.8176 REMARK 3 S21: -0.0620 S22: 0.1133 S23: -0.2397 REMARK 3 S31: 0.0486 S32: 1.0370 S33: -0.5325 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 5.7789 51.0599 10.3259 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.5344 REMARK 3 T33: 0.6823 T12: 0.0517 REMARK 3 T13: 0.1319 T23: -0.3245 REMARK 3 L TENSOR REMARK 3 L11: 1.7991 L22: 7.1383 REMARK 3 L33: 6.3318 L12: -3.4468 REMARK 3 L13: 0.4719 L23: 0.9179 REMARK 3 S TENSOR REMARK 3 S11: 0.6610 S12: -0.0148 S13: 0.3693 REMARK 3 S21: -0.4103 S22: -0.0278 S23: -1.7111 REMARK 3 S31: 0.6701 S32: 1.1091 S33: -0.7749 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): -7.2298 14.8106 -13.1987 REMARK 3 T TENSOR REMARK 3 T11: 0.4517 T22: 1.0212 REMARK 3 T33: 0.9654 T12: 0.1704 REMARK 3 T13: -0.1732 T23: -0.2565 REMARK 3 L TENSOR REMARK 3 L11: 6.4734 L22: 8.1090 REMARK 3 L33: 1.3413 L12: -7.0875 REMARK 3 L13: 1.1025 L23: -1.8122 REMARK 3 S TENSOR REMARK 3 S11: 0.7800 S12: 0.4731 S13: -2.8428 REMARK 3 S21: -0.0650 S22: 0.3481 S23: 1.3635 REMARK 3 S31: 0.3410 S32: 0.0288 S33: -0.9793 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060279. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788, 0.9184, 0.9796, 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31308 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% (W/V) PEG 4000, 200MM MG-ACETATE, REMARK 280 100MM NA-CACODYLATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.30000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 192.60000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 144.45000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 240.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.15000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.30000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 192.60000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 240.75000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 144.45000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 48.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 199 -148.24 63.81 REMARK 500 PRO A 236 106.15 -51.14 REMARK 500 LEU A 240 36.60 -94.33 REMARK 500 LYS B 83 64.65 36.44 REMARK 500 ARG B 199 -144.59 64.56 REMARK 500 ALA B 212 55.83 -113.48 REMARK 500 PRO B 236 116.25 -38.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 70 OH REMARK 620 2 HEM A 302 NA 101.3 REMARK 620 3 HEM A 302 NB 99.0 88.7 REMARK 620 4 HEM A 302 NC 92.6 166.1 88.1 REMARK 620 5 HEM A 302 ND 97.1 90.8 163.7 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 167 NE2 REMARK 620 2 HEM A 301 NA 107.1 REMARK 620 3 HEM A 301 NB 95.6 87.1 REMARK 620 4 HEM A 301 NC 81.2 171.6 90.6 REMARK 620 5 HEM A 301 ND 92.4 92.4 171.8 88.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 70 OH REMARK 620 2 HEM B 302 NA 103.2 REMARK 620 3 HEM B 302 NB 104.0 90.0 REMARK 620 4 HEM B 302 NC 85.8 170.4 91.1 REMARK 620 5 HEM B 302 ND 89.3 87.7 166.7 89.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 167 NE2 REMARK 620 2 HEM B 301 NA 128.9 REMARK 620 3 HEM B 301 NB 94.1 88.3 REMARK 620 4 HEM B 301 NC 70.7 160.2 87.3 REMARK 620 5 HEM B 301 ND 100.5 90.1 162.5 88.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 302 DBREF 3NU1 A 26 279 UNP Q1C0R0 Q1C0R0_YERPA 26 279 DBREF 3NU1 B 26 279 UNP Q1C0R0 Q1C0R0_YERPA 26 279 SEQRES 1 A 254 ALA GLU ARG ILE VAL THR ILE GLY GLY ASP VAL THR GLU SEQRES 2 A 254 ILE ALA TYR ALA LEU GLY ALA GLY ASP GLU ILE VAL ALA SEQRES 3 A 254 ARG ASP SER THR SER GLN GLN PRO GLN ALA ALA GLN LYS SEQRES 4 A 254 LEU PRO ASP VAL GLY TYR MET ARG THR LEU ASN ALA GLU SEQRES 5 A 254 GLY ILE LEU ALA MET LYS PRO THR MET LEU LEU VAL SER SEQRES 6 A 254 GLU LEU ALA GLN PRO SER LEU VAL LEU THR GLN ILE ALA SEQRES 7 A 254 SER SER GLY VAL ASN VAL VAL THR VAL PRO GLY GLN THR SEQRES 8 A 254 THR PRO GLU SER VAL ALA MET LYS ILE ASN ALA VAL ALA SEQRES 9 A 254 THR ALA LEU HIS GLN THR GLU LYS GLY GLN LYS LEU ILE SEQRES 10 A 254 GLU ASP TYR GLN GLN ARG LEU ALA ALA VAL ASN LYS THR SEQRES 11 A 254 PRO LEU PRO VAL LYS VAL LEU PHE VAL MET SER HIS GLY SEQRES 12 A 254 GLY LEU THR PRO MET ALA ALA GLY GLN ASN THR ALA ALA SEQRES 13 A 254 ASP ALA MET ILE ARG ALA ALA GLY GLY SER ASN ALA MET SEQRES 14 A 254 GLN GLY PHE SER ARG TYR ARG PRO LEU SER GLN GLU GLY SEQRES 15 A 254 VAL ILE ALA SER ALA PRO ASP LEU LEU LEU ILE THR THR SEQRES 16 A 254 ASP GLY VAL LYS ALA LEU GLY SER SER GLU ASN ILE TRP SEQRES 17 A 254 LYS LEU PRO GLY MET ALA LEU THR PRO ALA GLY LYS HIS SEQRES 18 A 254 LYS ARG LEU LEU VAL VAL ASP ASP MET ALA LEU LEU GLY SEQRES 19 A 254 PHE GLY LEU GLU THR PRO GLN VAL LEU ALA GLN LEU ARG SEQRES 20 A 254 GLU LYS MET GLU GLN MET GLN SEQRES 1 B 254 ALA GLU ARG ILE VAL THR ILE GLY GLY ASP VAL THR GLU SEQRES 2 B 254 ILE ALA TYR ALA LEU GLY ALA GLY ASP GLU ILE VAL ALA SEQRES 3 B 254 ARG ASP SER THR SER GLN GLN PRO GLN ALA ALA GLN LYS SEQRES 4 B 254 LEU PRO ASP VAL GLY TYR MET ARG THR LEU ASN ALA GLU SEQRES 5 B 254 GLY ILE LEU ALA MET LYS PRO THR MET LEU LEU VAL SER SEQRES 6 B 254 GLU LEU ALA GLN PRO SER LEU VAL LEU THR GLN ILE ALA SEQRES 7 B 254 SER SER GLY VAL ASN VAL VAL THR VAL PRO GLY GLN THR SEQRES 8 B 254 THR PRO GLU SER VAL ALA MET LYS ILE ASN ALA VAL ALA SEQRES 9 B 254 THR ALA LEU HIS GLN THR GLU LYS GLY GLN LYS LEU ILE SEQRES 10 B 254 GLU ASP TYR GLN GLN ARG LEU ALA ALA VAL ASN LYS THR SEQRES 11 B 254 PRO LEU PRO VAL LYS VAL LEU PHE VAL MET SER HIS GLY SEQRES 12 B 254 GLY LEU THR PRO MET ALA ALA GLY GLN ASN THR ALA ALA SEQRES 13 B 254 ASP ALA MET ILE ARG ALA ALA GLY GLY SER ASN ALA MET SEQRES 14 B 254 GLN GLY PHE SER ARG TYR ARG PRO LEU SER GLN GLU GLY SEQRES 15 B 254 VAL ILE ALA SER ALA PRO ASP LEU LEU LEU ILE THR THR SEQRES 16 B 254 ASP GLY VAL LYS ALA LEU GLY SER SER GLU ASN ILE TRP SEQRES 17 B 254 LYS LEU PRO GLY MET ALA LEU THR PRO ALA GLY LYS HIS SEQRES 18 B 254 LYS ARG LEU LEU VAL VAL ASP ASP MET ALA LEU LEU GLY SEQRES 19 B 254 PHE GLY LEU GLU THR PRO GLN VAL LEU ALA GLN LEU ARG SEQRES 20 B 254 GLU LYS MET GLU GLN MET GLN HET HEM A 301 43 HET HEM A 302 43 HET HEM B 301 43 HET HEM B 302 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM 4(C34 H32 FE N4 O4) FORMUL 7 HOH *44(H2 O) HELIX 1 1 GLY A 33 LEU A 43 1 11 HELIX 2 2 GLY A 44 ASP A 47 5 4 HELIX 3 3 PRO A 59 LYS A 64 1 6 HELIX 4 4 ASN A 75 ALA A 81 1 7 HELIX 5 5 PRO A 95 SER A 105 1 11 HELIX 6 6 GLU A 119 HIS A 133 1 15 HELIX 7 7 GLN A 134 ALA A 151 1 18 HELIX 8 8 THR A 179 ALA A 188 1 10 HELIX 9 9 SER A 204 ALA A 212 1 9 HELIX 10 10 THR A 220 GLY A 227 1 8 HELIX 11 11 SER A 228 LYS A 234 1 7 HELIX 12 12 GLY A 237 LEU A 240 5 4 HELIX 13 13 THR A 241 HIS A 246 1 6 HELIX 14 14 ASP A 253 GLY A 259 1 7 HELIX 15 15 GLU A 263 GLN A 277 1 15 HELIX 16 16 GLY B 33 LEU B 43 1 11 HELIX 17 17 ALA B 45 ASP B 47 5 3 HELIX 18 18 GLN B 60 LEU B 65 1 6 HELIX 19 19 ASN B 75 ALA B 81 1 7 HELIX 20 20 PRO B 95 SER B 105 1 11 HELIX 21 21 GLU B 119 HIS B 133 1 15 HELIX 22 22 GLN B 134 ALA B 150 1 17 HELIX 23 23 THR B 179 ALA B 188 1 10 HELIX 24 24 SER B 204 SER B 211 1 8 HELIX 25 25 THR B 220 GLY B 227 1 8 HELIX 26 26 SER B 228 TRP B 233 1 6 HELIX 27 27 THR B 241 LYS B 247 1 7 HELIX 28 28 ASP B 253 GLY B 259 1 7 HELIX 29 29 GLU B 263 MET B 278 1 16 SHEET 1 A 4 ILE A 49 ARG A 52 0 SHEET 2 A 4 ILE A 29 ILE A 32 1 N ILE A 29 O VAL A 50 SHEET 3 A 4 MET A 86 SER A 90 1 O LEU A 88 N ILE A 32 SHEET 4 A 4 ASN A 108 VAL A 112 1 O VAL A 110 N LEU A 87 SHEET 1 B 4 SER A 191 ASN A 192 0 SHEET 2 B 4 LYS A 160 MET A 165 1 N VAL A 161 O SER A 191 SHEET 3 B 4 MET A 173 ALA A 175 -1 O MET A 173 N MET A 165 SHEET 4 B 4 TYR A 200 PRO A 202 -1 O ARG A 201 N ALA A 174 SHEET 1 C 4 SER A 191 ASN A 192 0 SHEET 2 C 4 LYS A 160 MET A 165 1 N VAL A 161 O SER A 191 SHEET 3 C 4 LEU A 215 THR A 219 1 O LEU A 217 N LEU A 162 SHEET 4 C 4 LEU A 249 VAL A 252 1 O LEU A 250 N ILE A 218 SHEET 1 D 4 ILE B 49 ARG B 52 0 SHEET 2 D 4 ILE B 29 ILE B 32 1 N THR B 31 O ALA B 51 SHEET 3 D 4 MET B 86 SER B 90 1 O LEU B 88 N ILE B 32 SHEET 4 D 4 ASN B 108 VAL B 112 1 O VAL B 112 N VAL B 89 SHEET 1 E 4 SER B 191 ASN B 192 0 SHEET 2 E 4 LYS B 160 MET B 165 1 N VAL B 161 O SER B 191 SHEET 3 E 4 MET B 173 ALA B 175 -1 O MET B 173 N MET B 165 SHEET 4 E 4 TYR B 200 PRO B 202 -1 O ARG B 201 N ALA B 174 SHEET 1 F 4 SER B 191 ASN B 192 0 SHEET 2 F 4 LYS B 160 MET B 165 1 N VAL B 161 O SER B 191 SHEET 3 F 4 LEU B 215 THR B 219 1 O LEU B 217 N LEU B 162 SHEET 4 F 4 LEU B 249 VAL B 252 1 O LEU B 250 N LEU B 216 LINK OH TYR A 70 FE HEM A 302 1555 1555 2.05 LINK NE2 HIS A 167 FE HEM A 301 1555 1555 2.33 LINK OH TYR B 70 FE HEM B 302 1555 1555 2.20 LINK NE2 HIS B 167 FE HEM B 301 1555 1555 2.63 CISPEP 1 GLN A 58 PRO A 59 0 1.08 CISPEP 2 GLN A 94 PRO A 95 0 -3.45 CISPEP 3 GLN B 58 PRO B 59 0 1.11 CISPEP 4 GLN B 94 PRO B 95 0 -1.50 SITE 1 AC1 7 THR A 100 SER A 104 MET A 165 HIS A 167 SITE 2 AC1 7 LEU A 170 TYR A 200 HEM A 302 SITE 1 AC2 12 TYR A 70 ARG A 72 GLN A 101 THR A 179 SITE 2 AC2 12 ALA A 180 ALA A 181 TYR A 200 MET A 255 SITE 3 AC2 12 LEU A 258 HEM A 301 HOH A 306 HOH A 339 SITE 1 AC3 8 SER B 104 MET B 165 HIS B 167 LEU B 170 SITE 2 AC3 8 MET B 173 TYR B 200 LEU B 258 HEM B 302 SITE 1 AC4 12 THR B 55 TYR B 70 ARG B 72 LEU B 97 SITE 2 AC4 12 GLN B 101 THR B 179 ALA B 180 ALA B 181 SITE 3 AC4 12 ARG B 199 TYR B 200 MET B 255 HEM B 301 CRYST1 89.240 89.240 288.900 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011206 0.006470 0.000000 0.00000 SCALE2 0.000000 0.012939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003461 0.00000