HEADER TRANSCRIPTION REGULATOR 06-JUL-10 3NUF TITLE CRYSTAL STRUCTURE OF A PRD-CONTAINING TRANSCRIPTION REGULATOR TITLE 2 (LSEI_2718) FROM LACTOBACILLUS CASEI ATCC 334 AT 1.38 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRD-CONTAINING TRANSCRIPTION REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS CASEI; SOURCE 3 ORGANISM_TAXID: 321967; SOURCE 4 STRAIN: ATCC 334; SOURCE 5 GENE: LSEI_2718; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, TRANSCRIPTION, KEYWDS 3 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 17-JUL-19 3NUF 1 REMARK LINK REVDAT 3 25-OCT-17 3NUF 1 REMARK REVDAT 2 20-JUL-11 3NUF 1 KEYWDS REVDAT 1 08-SEP-10 3NUF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PRD-CONTAINING TRANSCRIPTION JRNL TITL 2 REGULATOR (LSEI_2718) FROM LACTOBACILLUS CASEI ATCC 334 AT JRNL TITL 3 1.38 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 47498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2409 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3236 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 175 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.815 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2039 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1304 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2772 ; 1.567 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3262 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 4.575 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;36.322 ;27.159 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 357 ;12.195 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;13.886 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2323 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 343 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1294 ; 1.555 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 505 ; 0.409 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2107 ; 2.673 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 745 ; 4.511 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 665 ; 7.090 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4520 29.6430 16.0466 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0476 REMARK 3 T33: 0.0068 T12: 0.0187 REMARK 3 T13: 0.0018 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.3211 L22: 0.2019 REMARK 3 L33: 0.3123 L12: 0.1552 REMARK 3 L13: -0.1255 L23: -0.1348 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: -0.0189 S13: 0.0496 REMARK 3 S21: 0.0037 S22: -0.0003 S23: 0.0302 REMARK 3 S31: 0.0460 S32: 0.1128 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): 19.3825 6.1214 17.5185 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0180 REMARK 3 T33: 0.0154 T12: 0.0139 REMARK 3 T13: -0.0080 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.4164 L22: 0.1824 REMARK 3 L33: 0.2163 L12: -0.0581 REMARK 3 L13: -0.0467 L23: 0.1756 REMARK 3 S TENSOR REMARK 3 S11: -0.0306 S12: -0.0049 S13: -0.0583 REMARK 3 S21: -0.0032 S22: -0.0024 S23: -0.0004 REMARK 3 S31: -0.0483 S32: -0.0253 S33: 0.0330 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 3. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 3 5. SULFATE (SO4) IONS, AND PEG-400 FRAGMENTS (PG4 AND PEG) ARE REMARK 3 MODELED FROM CRYSTALLIZATION CONDITIONS. 6. ETHYLENE GLYCOL (EDO) REMARK 3 MOLECULES ARE MODELED FROM CRYO CONDITIONS. 7. THERE IS A 5.4 REMARK 3 SIGMA PEAK IN THE FOFC ELECTRON DENSITY MAP NEAR CARBONYL OXYGEN REMARK 3 OF VALINE 106, WHICH COULD BE A WATER OR AMMONIUM ION, THIS REMARK 3 REMAINS UNMODELLED. REMARK 4 REMARK 4 3NUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837,0.97954,0.97939 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47575 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 28.759 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.87700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6000M AMMONIUM SULFATE, 4.0000% REMARK 280 POLYETHYLENE GLYCOL 400, 0.1M HEPES PH 7.5, NANODROP, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.86650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.58000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.79975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.58000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.93325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.58000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.58000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.79975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.58000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.58000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.93325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.86650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT REMARK 300 SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS A SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE IN SOLUTION. ANALYSIS OF THE CRYSTAL PACKING REMARK 300 SUGGESTS BOTH THE MONOMER AND THE DIMER IN THE CRYSTAL MIGHT BE REMARK 300 STABLE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 PRO B 3 REMARK 465 LEU B 4 REMARK 465 ASP B 5 REMARK 465 ALA B 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 7 CG OD1 ND2 REMARK 470 LYS A 117 NZ REMARK 470 ASN B 7 CG OD1 ND2 REMARK 470 VAL B 8 CG1 CG2 REMARK 470 GLU B 9 CD OE1 OE2 REMARK 470 LYS B 15 NZ REMARK 470 GLN B 20 OE1 NE2 REMARK 470 LYS B 36 CE NZ REMARK 470 GLU B 80 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 6 148.61 -171.35 REMARK 500 ASP A 23 91.77 -162.01 REMARK 500 ASP B 23 75.97 -158.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 392607 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NUF A 1 118 UNP Q034D9 Q034D9_LACC3 1 118 DBREF 3NUF B 1 118 UNP Q034D9 Q034D9_LACC3 1 118 SEQADV 3NUF GLY A 0 UNP Q034D9 EXPRESSION TAG SEQADV 3NUF GLY B 0 UNP Q034D9 EXPRESSION TAG SEQRES 1 A 119 GLY MSE THR PRO LEU ASP ALA ASN VAL GLU LEU PRO THR SEQRES 2 A 119 GLU VAL LYS ALA MSE ILE GLU GLN SER SER ASP ALA GLN SEQRES 3 A 119 ALA ALA THR ALA LEU VAL ASN TYR VAL ILE LYS LEU ALA SEQRES 4 A 119 ALA ALA ALA GLU ILE HIS PHE THR ASP LEU GLN LEU GLN SEQRES 5 A 119 VAL LEU THR ASN HIS LEU ILE GLU MSE LEU GLY ARG SER SEQRES 6 A 119 LYS SER GLY GLU GLN LEU PRO ALA VAL ASP PRO THR MSE SEQRES 7 A 119 PHE ALA GLU VAL SER GLN LYS SER LEU ASP LEU ALA ASP SEQRES 8 A 119 GLN VAL VAL GLN HIS ILE GLY HIS LEU GLU VAL ALA GLU SEQRES 9 A 119 LYS TYR VAL LEU SER ILE HIS PHE GLU ALA ALA GLN ASP SEQRES 10 A 119 LYS ILE SEQRES 1 B 119 GLY MSE THR PRO LEU ASP ALA ASN VAL GLU LEU PRO THR SEQRES 2 B 119 GLU VAL LYS ALA MSE ILE GLU GLN SER SER ASP ALA GLN SEQRES 3 B 119 ALA ALA THR ALA LEU VAL ASN TYR VAL ILE LYS LEU ALA SEQRES 4 B 119 ALA ALA ALA GLU ILE HIS PHE THR ASP LEU GLN LEU GLN SEQRES 5 B 119 VAL LEU THR ASN HIS LEU ILE GLU MSE LEU GLY ARG SER SEQRES 6 B 119 LYS SER GLY GLU GLN LEU PRO ALA VAL ASP PRO THR MSE SEQRES 7 B 119 PHE ALA GLU VAL SER GLN LYS SER LEU ASP LEU ALA ASP SEQRES 8 B 119 GLN VAL VAL GLN HIS ILE GLY HIS LEU GLU VAL ALA GLU SEQRES 9 B 119 LYS TYR VAL LEU SER ILE HIS PHE GLU ALA ALA GLN ASP SEQRES 10 B 119 LYS ILE MODRES 3NUF MSE A 1 MET SELENOMETHIONINE MODRES 3NUF MSE A 17 MET SELENOMETHIONINE MODRES 3NUF MSE A 60 MET SELENOMETHIONINE MODRES 3NUF MSE A 77 MET SELENOMETHIONINE MODRES 3NUF MSE B 17 MET SELENOMETHIONINE MODRES 3NUF MSE B 60 MET SELENOMETHIONINE MODRES 3NUF MSE B 77 MET SELENOMETHIONINE HET MSE A 1 24 HET MSE A 17 16 HET MSE A 60 8 HET MSE A 77 8 HET MSE B 17 8 HET MSE B 60 16 HET MSE B 77 16 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 305 4 HET EDO A 307 4 HET EDO A 308 4 HET PEG A 309 7 HET SO4 B 301 5 HET EDO B 304 4 HET EDO B 306 4 HET PG4 B 310 13 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 3 EDO 7(C2 H6 O2) FORMUL 8 PEG C4 H10 O3 FORMUL 9 SO4 O4 S 2- FORMUL 12 PG4 C8 H18 O5 FORMUL 13 HOH *316(H2 O) HELIX 1 1 PRO A 11 SER A 21 1 11 HELIX 2 2 ASP A 23 ALA A 41 1 19 HELIX 3 3 THR A 46 GLY A 67 1 22 HELIX 4 4 ASP A 74 ALA A 79 5 6 HELIX 5 5 SER A 82 GLY A 97 1 16 HELIX 6 6 GLU A 100 ALA A 102 5 3 HELIX 7 7 GLU A 103 GLN A 115 1 13 HELIX 8 8 PRO B 11 SER B 21 1 11 HELIX 9 9 ASP B 23 ALA B 41 1 19 HELIX 10 10 THR B 46 GLY B 67 1 22 HELIX 11 11 ASP B 74 ALA B 79 5 6 HELIX 12 12 SER B 82 GLY B 97 1 16 HELIX 13 13 GLU B 100 ALA B 102 5 3 HELIX 14 14 GLU B 103 GLN B 115 1 13 LINK C AMSE A 1 N THR A 2 1555 1555 1.33 LINK C BMSE A 1 N THR A 2 1555 1555 1.34 LINK C CMSE A 1 N THR A 2 1555 1555 1.33 LINK C ALA A 16 N AMSE A 17 1555 1555 1.34 LINK C ALA A 16 N BMSE A 17 1555 1555 1.33 LINK C AMSE A 17 N ILE A 18 1555 1555 1.33 LINK C BMSE A 17 N ILE A 18 1555 1555 1.32 LINK C AGLU A 59 N MSE A 60 1555 1555 1.33 LINK C BGLU A 59 N MSE A 60 1555 1555 1.32 LINK C MSE A 60 N LEU A 61 1555 1555 1.34 LINK C THR A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N PHE A 78 1555 1555 1.34 LINK C ALA B 16 N MSE B 17 1555 1555 1.33 LINK C MSE B 17 N ILE B 18 1555 1555 1.31 LINK C AGLU B 59 N AMSE B 60 1555 1555 1.33 LINK C BGLU B 59 N BMSE B 60 1555 1555 1.34 LINK C AMSE B 60 N LEU B 61 1555 1555 1.34 LINK C BMSE B 60 N LEU B 61 1555 1555 1.31 LINK C THR B 76 N AMSE B 77 1555 1555 1.33 LINK C THR B 76 N BMSE B 77 1555 1555 1.33 LINK C AMSE B 77 N PHE B 78 1555 1555 1.34 LINK C BMSE B 77 N PHE B 78 1555 1555 1.34 SITE 1 AC1 7 GLU A 19 ASP A 74 THR A 76 HOH A 323 SITE 2 AC1 7 HOH A 564 THR B 46 GLN B 49 SITE 1 AC2 9 SER A 64 LYS A 65 GLY A 67 HOH A 580 SITE 2 AC2 9 LYS B 65 VAL B 101 HOH B 342 HOH B 551 SITE 3 AC2 9 HOH B 618 SITE 1 AC3 9 ASP A 23 LYS A 65 VAL A 101 HOH A 311 SITE 2 AC3 9 HOH A 625 SER B 64 LYS B 65 HIS B 98 SITE 3 AC3 9 HOH B 429 SITE 1 AC4 9 SER A 22 ASP A 23 ILE A 58 GLY A 62 SITE 2 AC4 9 LYS A 65 HOH A 437 HOH A 605 SER B 66 SITE 3 AC4 9 HOH B 436 SITE 1 AC5 3 TYR A 33 GLN A 91 HIS A 95 SITE 1 AC6 3 HIS A 110 HOH A 513 HOH A 563 SITE 1 AC7 4 TYR B 33 GLN B 91 HIS B 95 HOH B 339 SITE 1 AC8 9 SER A 66 HOH A 426 SER B 22 ASP B 23 SITE 2 AC8 9 ILE B 58 GLY B 62 LYS B 65 HOH B 414 SITE 3 AC8 9 HOH B 534 SITE 1 AC9 8 PRO B 71 ALA B 72 VAL B 73 GLU B 100 SITE 2 AC9 8 ALA B 102 GLU B 103 HOH B 331 HOH B 438 SITE 1 BC1 7 MSE A 77 PHE A 78 MSE B 77 PHE B 78 SITE 2 BC1 7 HOH B 422 HOH B 612 HOH B 624 CRYST1 67.160 67.160 99.733 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014890 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010027 0.00000 HETATM 1 N AMSE A 1 5.133 38.191 22.757 0.33 29.67 N ANISOU 1 N AMSE A 1 3566 3713 3994 3 181 -68 N HETATM 2 N BMSE A 1 4.690 38.475 22.582 0.33 30.89 N ANISOU 2 N BMSE A 1 3715 3849 4171 1 186 -63 N HETATM 3 N CMSE A 1 5.200 38.065 22.608 0.34 29.37 N ANISOU 3 N CMSE A 1 3528 3678 3952 5 177 -65 N HETATM 4 CA AMSE A 1 6.311 39.087 22.902 0.33 30.31 C ANISOU 4 CA AMSE A 1 3639 3812 4062 -14 185 -85 C HETATM 5 CA BMSE A 1 5.868 39.266 23.062 0.33 31.76 C ANISOU 5 CA BMSE A 1 3822 3980 4262 -16 194 -87 C HETATM 6 CA CMSE A 1 5.987 39.244 23.055 0.34 30.12 C ANISOU 6 CA CMSE A 1 3615 3777 4051 -16 193 -88 C HETATM 7 C AMSE A 1 6.386 40.046 21.726 0.33 29.68 C ANISOU 7 C AMSE A 1 3542 3715 4018 -20 180 -66 C HETATM 8 C BMSE A 1 6.499 40.002 21.871 0.33 30.36 C ANISOU 8 C BMSE A 1 3630 3806 4099 -21 181 -70 C HETATM 9 C CMSE A 1 6.500 40.010 21.844 0.34 29.56 C ANISOU 9 C CMSE A 1 3528 3704 3998 -21 180 -69 C HETATM 10 O AMSE A 1 6.226 39.643 20.578 0.33 29.07 O ANISOU 10 O AMSE A 1 3461 3638 3945 -8 159 -37 O HETATM 11 O BMSE A 1 6.870 39.382 20.881 0.33 29.15 O ANISOU 11 O BMSE A 1 3476 3672 3926 -8 155 -47 O HETATM 12 O CMSE A 1 6.793 39.422 20.810 0.34 28.61 O ANISOU 12 O CMSE A 1 3407 3600 3862 -8 155 -45 O HETATM 13 CB AMSE A 1 7.607 38.263 22.930 0.33 29.55 C ANISOU 13 CB AMSE A 1 3550 3768 3907 -6 164 -88 C HETATM 14 CB BMSE A 1 6.893 38.357 23.786 0.33 32.66 C ANISOU 14 CB BMSE A 1 3950 4144 4315 -11 183 -102 C HETATM 15 CB CMSE A 1 7.159 38.798 23.942 0.34 30.78 C ANISOU 15 CB CMSE A 1 3708 3906 4078 -20 189 -111 C HETATM 16 CG AMSE A 1 8.011 37.677 24.259 0.33 26.09 C ANISOU 16 CG AMSE A 1 3125 3358 3428 -7 171 -112 C HETATM 17 CG BMSE A 1 7.966 39.116 24.613 0.33 34.46 C ANISOU 17 CG BMSE A 1 4175 4395 4520 -34 195 -132 C HETATM 18 CG CMSE A 1 8.220 39.865 24.172 0.34 28.04 C ANISOU 18 CG CMSE A 1 3353 3575 3725 -44 196 -130 C HETATM 19 SE AMSE A 1 9.586 38.591 25.019 0.25 24.59 SE ANISOU 19 SE AMSE A 1 2927 3209 3205 -36 177 -141 SE HETATM 20 SE BMSE A 1 8.755 38.177 26.187 0.25 41.90 SE ANISOU 20 SE BMSE A 1 5134 5390 5396 -37 195 -157 SE HETATM 21 SE CMSE A 1 9.268 39.571 25.796 0.25 34.37 SE ANISOU 21 SE CMSE A 1 4165 4426 4466 -60 204 -166 SE HETATM 22 CE AMSE A 1 8.795 40.222 25.581 0.33 11.58 C ANISOU 22 CE AMSE A 1 1274 1511 1613 -67 215 -167 C HETATM 23 CE BMSE A 1 8.884 36.385 25.463 0.33 38.99 C ANISOU 23 CE BMSE A 1 4774 5046 4992 1 163 -125 C HETATM 24 CE CMSE A 1 8.055 40.302 27.122 0.34 36.50 C ANISOU 24 CE CMSE A 1 4444 4652 4770 -81 246 -198 C