data_3NV3 # _entry.id 3NV3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NV3 pdb_00003nv3 10.2210/pdb3nv3/pdb RCSB RCSB060315 ? ? WWPDB D_1000060315 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NV1 'The same protein without ligand' unspecified PDB 3NV2 'The same protein with N-acetyllactosamine' unspecified PDB 3NV4 'The same protein with Sialyllactose' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NV3 _pdbx_database_status.recvd_initial_deposition_date 2010-07-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Yoshida, H.' 1 'Kamitori, S.' 2 # _citation.id primary _citation.title 'X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 36969 _citation.page_last 36976 _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20861009 _citation.pdbx_database_id_DOI 10.1074/jbc.M110.163402 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yoshida, H.' 1 ? primary 'Teraoka, M.' 2 ? primary 'Nishi, N.' 3 ? primary 'Nakakita, S.' 4 ? primary 'Nakamura, T.' 5 ? primary 'Hirashima, M.' 6 ? primary 'Kamitori, S.' 7 ? # _cell.entry_id 3NV3 _cell.length_a 71.003 _cell.length_b 71.003 _cell.length_c 49.741 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NV3 _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Galectin 9 short isoform variant' 15729.982 1 ? ? 'C-terminal carbohydrate recognition domain, residues 186-323' ? 2 branched man 'beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose' 545.490 1 ? ? ? ? 3 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ? 4 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Galectin-9 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT ; _entity_poly.pdbx_seq_one_letter_code_can ;YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 PRO n 1 3 HIS n 1 4 PRO n 1 5 ALA n 1 6 TYR n 1 7 PRO n 1 8 MET n 1 9 PRO n 1 10 PHE n 1 11 ILE n 1 12 THR n 1 13 THR n 1 14 ILE n 1 15 LEU n 1 16 GLY n 1 17 GLY n 1 18 LEU n 1 19 TYR n 1 20 PRO n 1 21 SER n 1 22 LYS n 1 23 SER n 1 24 ILE n 1 25 LEU n 1 26 LEU n 1 27 SER n 1 28 GLY n 1 29 THR n 1 30 VAL n 1 31 LEU n 1 32 PRO n 1 33 SER n 1 34 ALA n 1 35 GLN n 1 36 ARG n 1 37 PHE n 1 38 HIS n 1 39 ILE n 1 40 ASN n 1 41 LEU n 1 42 CYS n 1 43 SER n 1 44 GLY n 1 45 ASN n 1 46 HIS n 1 47 ILE n 1 48 ALA n 1 49 PHE n 1 50 HIS n 1 51 LEU n 1 52 ASN n 1 53 PRO n 1 54 ARG n 1 55 PHE n 1 56 ASP n 1 57 GLU n 1 58 ASN n 1 59 ALA n 1 60 VAL n 1 61 VAL n 1 62 ARG n 1 63 ASN n 1 64 THR n 1 65 GLN n 1 66 ILE n 1 67 ASP n 1 68 ASN n 1 69 SER n 1 70 TRP n 1 71 GLY n 1 72 SER n 1 73 GLU n 1 74 GLU n 1 75 ARG n 1 76 SER n 1 77 LEU n 1 78 PRO n 1 79 ARG n 1 80 LYS n 1 81 MET n 1 82 PRO n 1 83 PHE n 1 84 VAL n 1 85 ARG n 1 86 GLY n 1 87 GLN n 1 88 SER n 1 89 PHE n 1 90 SER n 1 91 VAL n 1 92 TRP n 1 93 ILE n 1 94 LEU n 1 95 CYS n 1 96 GLU n 1 97 ALA n 1 98 HIS n 1 99 CYS n 1 100 LEU n 1 101 LYS n 1 102 VAL n 1 103 ALA n 1 104 VAL n 1 105 ASP n 1 106 GLY n 1 107 GLN n 1 108 HIS n 1 109 LEU n 1 110 PHE n 1 111 GLU n 1 112 TYR n 1 113 TYR n 1 114 HIS n 1 115 ARG n 1 116 LEU n 1 117 ARG n 1 118 ASN n 1 119 LEU n 1 120 PRO n 1 121 THR n 1 122 ILE n 1 123 ASN n 1 124 ARG n 1 125 LEU n 1 126 GLU n 1 127 VAL n 1 128 GLY n 1 129 GLY n 1 130 ASP n 1 131 ILE n 1 132 GLN n 1 133 LEU n 1 134 THR n 1 135 HIS n 1 136 VAL n 1 137 GLN n 1 138 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pGEX-4T-2 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q53FQ0_HUMAN _struct_ref.pdbx_db_accession Q53FQ0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT ; _struct_ref.pdbx_align_begin 186 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NV3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 138 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q53FQ0 _struct_ref_seq.db_align_beg 186 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 323 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 186 _struct_ref_seq.pdbx_auth_seq_align_end 323 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose 'alpha-D-mannose; D-mannose; mannose' 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3NV3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '20% PEG MME 2000, 0.1M Tris pH 8.5, 0.01M nickel chloride hexahydrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2010-02-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-5A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-5A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 3NV3 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.57 _reflns.number_obs 19985 _reflns.number_all ? _reflns.pdbx_number_measured_all 96753 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.055 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.6 _reflns.B_iso_Wilson_estimate 20.5 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.57 _reflns_shell.d_res_low 1.60 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.356 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.5 _reflns_shell.pdbx_redundancy 3.9 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NV3 _refine.ls_number_reflns_obs 19402 _refine.ls_number_reflns_all 19402 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 144226.30 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 35.50 _refine.ls_d_res_high 1.57 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs 0.188 _refine.ls_R_factor_all 0.191 _refine.ls_R_factor_R_work 0.188 _refine.ls_R_factor_R_free 0.212 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1914 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.66 _refine.aniso_B[2][2] -0.66 _refine.aniso_B[3][3] 1.32 _refine.aniso_B[1][2] 0.88 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.367428 _refine.solvent_model_param_bsol 54.5776 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB entry 3KOE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3NV3 _refine_analyze.Luzzati_coordinate_error_obs 0.17 _refine_analyze.Luzzati_sigma_a_obs 0.11 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.19 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1091 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1272 _refine_hist.d_res_high 1.57 _refine_hist.d_res_low 35.50 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 26.9 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.83 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.57 _refine_ls_shell.d_res_low 1.67 _refine_ls_shell.number_reflns_R_work 2771 _refine_ls_shell.R_factor_R_work 0.226 _refine_ls_shell.percent_reflns_obs 91.7 _refine_ls_shell.R_factor_R_free 0.255 _refine_ls_shell.R_factor_R_free_error 0.015 _refine_ls_shell.percent_reflns_R_free 9.1 _refine_ls_shell.number_reflns_R_free 277 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 carbohydrate.param carbohydrate.top 'X-RAY DIFFRACTION' 3 ion.param ion.top 'X-RAY DIFFRACTION' 4 water_rep.param water.top # _struct.entry_id 3NV3 _struct.title 'Crystal structure of human galectin-9 C-terminal CRD in complex with biantennary oligosaccharide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NV3 _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.text 'Sugar Binding, Sugar Binding Protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details 'AUTHOR STATES THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN.' # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ASN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 118 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ILE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 122 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 303 _struct_conf.end_auth_comp_id ILE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 307 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B MAN . O2 ? ? ? 1_555 B NAG . C1 ? ? B MAN 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.385 ? ? covale2 covale both ? B NAG . O4 ? ? ? 1_555 B GAL . C1 ? ? B NAG 2 B GAL 3 1_555 ? ? ? ? ? ? ? 1.383 ? ? metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C NI . NI ? ? A HOH 17 A NI 401 1_555 ? ? ? ? ? ? ? 2.136 ? ? metalc2 metalc ? ? A HIS 135 NE2 ? ? ? 1_555 C NI . NI ? ? A HIS 320 A NI 401 1_555 ? ? ? ? ? ? ? 2.125 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id MET _struct_mon_prot_cis.label_seq_id 8 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id MET _struct_mon_prot_cis.auth_seq_id 193 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 9 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 194 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.09 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 10 ? THR A 13 ? PHE A 195 THR A 198 A 2 ARG A 124 ? GLY A 129 ? ARG A 309 GLY A 314 A 3 PHE A 37 ? SER A 43 ? PHE A 222 SER A 228 A 4 HIS A 46 ? ARG A 54 ? HIS A 231 ARG A 239 A 5 ALA A 59 ? ILE A 66 ? ALA A 244 ILE A 251 A 6 SER A 69 ? TRP A 70 ? SER A 254 TRP A 255 B 1 GLN A 107 ? TYR A 113 ? GLN A 292 TYR A 298 B 2 CYS A 99 ? VAL A 104 ? CYS A 284 VAL A 289 B 3 SER A 88 ? CYS A 95 ? SER A 273 CYS A 280 B 4 SER A 23 ? VAL A 30 ? SER A 208 VAL A 215 B 5 ILE A 131 ? GLN A 137 ? ILE A 316 GLN A 322 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 12 ? N THR A 197 O LEU A 125 ? O LEU A 310 A 2 3 O ARG A 124 ? O ARG A 309 N CYS A 42 ? N CYS A 227 A 3 4 N ILE A 39 ? N ILE A 224 O LEU A 51 ? O LEU A 236 A 4 5 N ARG A 54 ? N ARG A 239 O ALA A 59 ? O ALA A 244 A 5 6 N ILE A 66 ? N ILE A 251 O SER A 69 ? O SER A 254 B 1 2 O LEU A 109 ? O LEU A 294 N VAL A 102 ? N VAL A 287 B 2 3 O LYS A 101 ? O LYS A 286 N LEU A 94 ? N LEU A 279 B 3 4 O VAL A 91 ? O VAL A 276 N LEU A 26 ? N LEU A 211 B 4 5 N LEU A 25 ? N LEU A 210 O GLN A 137 ? O GLN A 322 # _database_PDB_matrix.entry_id 3NV3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NV3 _atom_sites.fract_transf_matrix[1][1] 0.014084 _atom_sites.fract_transf_matrix[1][2] 0.008131 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016263 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020104 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NI O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 186 ? ? ? A . n A 1 2 PRO 2 187 ? ? ? A . n A 1 3 HIS 3 188 188 HIS HIS A . n A 1 4 PRO 4 189 189 PRO PRO A . n A 1 5 ALA 5 190 190 ALA ALA A . n A 1 6 TYR 6 191 191 TYR TYR A . n A 1 7 PRO 7 192 192 PRO PRO A . n A 1 8 MET 8 193 193 MET MET A . n A 1 9 PRO 9 194 194 PRO PRO A . n A 1 10 PHE 10 195 195 PHE PHE A . n A 1 11 ILE 11 196 196 ILE ILE A . n A 1 12 THR 12 197 197 THR THR A . n A 1 13 THR 13 198 198 THR THR A . n A 1 14 ILE 14 199 199 ILE ILE A . n A 1 15 LEU 15 200 200 LEU LEU A . n A 1 16 GLY 16 201 201 GLY GLY A . n A 1 17 GLY 17 202 202 GLY GLY A . n A 1 18 LEU 18 203 203 LEU LEU A . n A 1 19 TYR 19 204 204 TYR TYR A . n A 1 20 PRO 20 205 205 PRO PRO A . n A 1 21 SER 21 206 206 SER SER A . n A 1 22 LYS 22 207 207 LYS LYS A . n A 1 23 SER 23 208 208 SER SER A . n A 1 24 ILE 24 209 209 ILE ILE A . n A 1 25 LEU 25 210 210 LEU LEU A . n A 1 26 LEU 26 211 211 LEU LEU A . n A 1 27 SER 27 212 212 SER SER A . n A 1 28 GLY 28 213 213 GLY GLY A . n A 1 29 THR 29 214 214 THR THR A . n A 1 30 VAL 30 215 215 VAL VAL A . n A 1 31 LEU 31 216 216 LEU LEU A . n A 1 32 PRO 32 217 217 PRO PRO A . n A 1 33 SER 33 218 218 SER SER A . n A 1 34 ALA 34 219 219 ALA ALA A . n A 1 35 GLN 35 220 220 GLN GLN A . n A 1 36 ARG 36 221 221 ARG ARG A . n A 1 37 PHE 37 222 222 PHE PHE A . n A 1 38 HIS 38 223 223 HIS HIS A . n A 1 39 ILE 39 224 224 ILE ILE A . n A 1 40 ASN 40 225 225 ASN ASN A . n A 1 41 LEU 41 226 226 LEU LEU A . n A 1 42 CYS 42 227 227 CYS CYS A . n A 1 43 SER 43 228 228 SER SER A . n A 1 44 GLY 44 229 229 GLY GLY A . n A 1 45 ASN 45 230 230 ASN ASN A . n A 1 46 HIS 46 231 231 HIS HIS A . n A 1 47 ILE 47 232 232 ILE ILE A . n A 1 48 ALA 48 233 233 ALA ALA A . n A 1 49 PHE 49 234 234 PHE PHE A . n A 1 50 HIS 50 235 235 HIS HIS A . n A 1 51 LEU 51 236 236 LEU LEU A . n A 1 52 ASN 52 237 237 ASN ASN A . n A 1 53 PRO 53 238 238 PRO PRO A . n A 1 54 ARG 54 239 239 ARG ARG A . n A 1 55 PHE 55 240 240 PHE PHE A . n A 1 56 ASP 56 241 241 ASP ASP A . n A 1 57 GLU 57 242 242 GLU GLU A . n A 1 58 ASN 58 243 243 ASN ASN A . n A 1 59 ALA 59 244 244 ALA ALA A . n A 1 60 VAL 60 245 245 VAL VAL A . n A 1 61 VAL 61 246 246 VAL VAL A . n A 1 62 ARG 62 247 247 ARG ARG A . n A 1 63 ASN 63 248 248 ASN ASN A . n A 1 64 THR 64 249 249 THR THR A . n A 1 65 GLN 65 250 250 GLN GLN A . n A 1 66 ILE 66 251 251 ILE ILE A . n A 1 67 ASP 67 252 252 ASP ASP A . n A 1 68 ASN 68 253 253 ASN ASN A . n A 1 69 SER 69 254 254 SER SER A . n A 1 70 TRP 70 255 255 TRP TRP A . n A 1 71 GLY 71 256 256 GLY GLY A . n A 1 72 SER 72 257 257 SER SER A . n A 1 73 GLU 73 258 258 GLU GLU A . n A 1 74 GLU 74 259 259 GLU GLU A . n A 1 75 ARG 75 260 260 ARG ARG A . n A 1 76 SER 76 261 261 SER SER A . n A 1 77 LEU 77 262 262 LEU LEU A . n A 1 78 PRO 78 263 263 PRO PRO A . n A 1 79 ARG 79 264 264 ARG ARG A . n A 1 80 LYS 80 265 265 LYS LYS A . n A 1 81 MET 81 266 266 MET MET A . n A 1 82 PRO 82 267 267 PRO PRO A . n A 1 83 PHE 83 268 268 PHE PHE A . n A 1 84 VAL 84 269 269 VAL VAL A . n A 1 85 ARG 85 270 270 ARG ARG A . n A 1 86 GLY 86 271 271 GLY GLY A . n A 1 87 GLN 87 272 272 GLN GLN A . n A 1 88 SER 88 273 273 SER SER A . n A 1 89 PHE 89 274 274 PHE PHE A . n A 1 90 SER 90 275 275 SER SER A . n A 1 91 VAL 91 276 276 VAL VAL A . n A 1 92 TRP 92 277 277 TRP TRP A . n A 1 93 ILE 93 278 278 ILE ILE A . n A 1 94 LEU 94 279 279 LEU LEU A . n A 1 95 CYS 95 280 280 CYS CYS A . n A 1 96 GLU 96 281 281 GLU GLU A . n A 1 97 ALA 97 282 282 ALA ALA A . n A 1 98 HIS 98 283 283 HIS HIS A . n A 1 99 CYS 99 284 284 CYS CYS A . n A 1 100 LEU 100 285 285 LEU LEU A . n A 1 101 LYS 101 286 286 LYS LYS A . n A 1 102 VAL 102 287 287 VAL VAL A . n A 1 103 ALA 103 288 288 ALA ALA A . n A 1 104 VAL 104 289 289 VAL VAL A . n A 1 105 ASP 105 290 290 ASP ASP A . n A 1 106 GLY 106 291 291 GLY GLY A . n A 1 107 GLN 107 292 292 GLN GLN A . n A 1 108 HIS 108 293 293 HIS HIS A . n A 1 109 LEU 109 294 294 LEU LEU A . n A 1 110 PHE 110 295 295 PHE PHE A . n A 1 111 GLU 111 296 296 GLU GLU A . n A 1 112 TYR 112 297 297 TYR TYR A . n A 1 113 TYR 113 298 298 TYR TYR A . n A 1 114 HIS 114 299 299 HIS HIS A . n A 1 115 ARG 115 300 300 ARG ARG A . n A 1 116 LEU 116 301 301 LEU LEU A . n A 1 117 ARG 117 302 302 ARG ARG A . n A 1 118 ASN 118 303 303 ASN ASN A . n A 1 119 LEU 119 304 304 LEU LEU A . n A 1 120 PRO 120 305 305 PRO PRO A . n A 1 121 THR 121 306 306 THR THR A . n A 1 122 ILE 122 307 307 ILE ILE A . n A 1 123 ASN 123 308 308 ASN ASN A . n A 1 124 ARG 124 309 309 ARG ARG A . n A 1 125 LEU 125 310 310 LEU LEU A . n A 1 126 GLU 126 311 311 GLU GLU A . n A 1 127 VAL 127 312 312 VAL VAL A . n A 1 128 GLY 128 313 313 GLY GLY A . n A 1 129 GLY 129 314 314 GLY GLY A . n A 1 130 ASP 130 315 315 ASP ASP A . n A 1 131 ILE 131 316 316 ILE ILE A . n A 1 132 GLN 132 317 317 GLN GLN A . n A 1 133 LEU 133 318 318 LEU LEU A . n A 1 134 THR 134 319 319 THR THR A . n A 1 135 HIS 135 320 320 HIS HIS A . n A 1 136 VAL 136 321 321 VAL VAL A . n A 1 137 GLN 137 322 322 GLN GLN A . n A 1 138 THR 138 323 323 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NI 1 401 401 NI NI2 A . D 4 HOH 1 1 1 HOH HOH A . D 4 HOH 2 2 2 HOH HOH A . D 4 HOH 3 3 3 HOH HOH A . D 4 HOH 4 4 4 HOH HOH A . D 4 HOH 5 5 5 HOH HOH A . D 4 HOH 6 6 6 HOH HOH A . D 4 HOH 7 7 7 HOH HOH A . D 4 HOH 8 8 8 HOH HOH A . D 4 HOH 9 9 9 HOH HOH A . D 4 HOH 10 10 10 HOH HOH A . D 4 HOH 11 11 11 HOH HOH A . D 4 HOH 12 12 12 HOH HOH A . D 4 HOH 13 13 13 HOH HOH A . D 4 HOH 14 14 14 HOH HOH A . D 4 HOH 15 15 15 HOH HOH A . D 4 HOH 16 16 16 HOH HOH A . D 4 HOH 17 17 17 HOH HOH A . D 4 HOH 18 18 18 HOH HOH A . D 4 HOH 19 19 19 HOH HOH A . D 4 HOH 20 20 20 HOH HOH A . D 4 HOH 21 21 21 HOH HOH A . D 4 HOH 22 22 22 HOH HOH A . D 4 HOH 23 23 23 HOH HOH A . D 4 HOH 24 24 24 HOH HOH A . D 4 HOH 25 25 25 HOH HOH A . D 4 HOH 26 26 26 HOH HOH A . D 4 HOH 27 27 27 HOH HOH A . D 4 HOH 28 28 28 HOH HOH A . D 4 HOH 29 29 29 HOH HOH A . D 4 HOH 30 30 30 HOH HOH A . D 4 HOH 31 31 31 HOH HOH A . D 4 HOH 32 32 32 HOH HOH A . D 4 HOH 33 33 33 HOH HOH A . D 4 HOH 34 34 34 HOH HOH A . D 4 HOH 35 35 35 HOH HOH A . D 4 HOH 36 36 36 HOH HOH A . D 4 HOH 37 37 37 HOH HOH A . D 4 HOH 38 38 38 HOH HOH A . D 4 HOH 39 39 39 HOH HOH A . D 4 HOH 40 40 40 HOH HOH A . D 4 HOH 41 41 41 HOH HOH A . D 4 HOH 42 42 42 HOH HOH A . D 4 HOH 43 43 43 HOH HOH A . D 4 HOH 44 44 44 HOH HOH A . D 4 HOH 45 45 45 HOH HOH A . D 4 HOH 46 46 46 HOH HOH A . D 4 HOH 47 47 47 HOH HOH A . D 4 HOH 48 48 48 HOH HOH A . D 4 HOH 49 49 49 HOH HOH A . D 4 HOH 50 50 50 HOH HOH A . D 4 HOH 51 51 51 HOH HOH A . D 4 HOH 52 52 52 HOH HOH A . D 4 HOH 53 53 53 HOH HOH A . D 4 HOH 54 54 54 HOH HOH A . D 4 HOH 55 55 55 HOH HOH A . D 4 HOH 56 56 56 HOH HOH A . D 4 HOH 57 57 57 HOH HOH A . D 4 HOH 58 58 58 HOH HOH A . D 4 HOH 59 59 59 HOH HOH A . D 4 HOH 60 60 60 HOH HOH A . D 4 HOH 61 61 61 HOH HOH A . D 4 HOH 62 62 62 HOH HOH A . D 4 HOH 63 63 63 HOH HOH A . D 4 HOH 64 64 64 HOH HOH A . D 4 HOH 65 65 65 HOH HOH A . D 4 HOH 66 66 66 HOH HOH A . D 4 HOH 67 67 67 HOH HOH A . D 4 HOH 68 68 68 HOH HOH A . D 4 HOH 69 69 69 HOH HOH A . D 4 HOH 70 70 70 HOH HOH A . D 4 HOH 71 71 71 HOH HOH A . D 4 HOH 72 72 72 HOH HOH A . D 4 HOH 73 73 73 HOH HOH A . D 4 HOH 74 74 74 HOH HOH A . D 4 HOH 75 75 75 HOH HOH A . D 4 HOH 76 76 76 HOH HOH A . D 4 HOH 77 77 77 HOH HOH A . D 4 HOH 78 78 78 HOH HOH A . D 4 HOH 79 79 79 HOH HOH A . D 4 HOH 80 80 80 HOH HOH A . D 4 HOH 81 81 81 HOH HOH A . D 4 HOH 82 82 82 HOH HOH A . D 4 HOH 83 83 83 HOH HOH A . D 4 HOH 84 84 84 HOH HOH A . D 4 HOH 85 85 85 HOH HOH A . D 4 HOH 86 86 86 HOH HOH A . D 4 HOH 87 87 87 HOH HOH A . D 4 HOH 88 88 88 HOH HOH A . D 4 HOH 89 89 89 HOH HOH A . D 4 HOH 90 90 90 HOH HOH A . D 4 HOH 91 91 91 HOH HOH A . D 4 HOH 92 92 92 HOH HOH A . D 4 HOH 93 93 93 HOH HOH A . D 4 HOH 94 94 94 HOH HOH A . D 4 HOH 95 95 95 HOH HOH A . D 4 HOH 96 96 96 HOH HOH A . D 4 HOH 97 97 97 HOH HOH A . D 4 HOH 98 98 98 HOH HOH A . D 4 HOH 99 99 99 HOH HOH A . D 4 HOH 100 100 100 HOH HOH A . D 4 HOH 101 101 101 HOH HOH A . D 4 HOH 102 102 102 HOH HOH A . D 4 HOH 103 103 103 HOH HOH A . D 4 HOH 104 104 104 HOH HOH A . D 4 HOH 105 105 105 HOH HOH A . D 4 HOH 106 106 106 HOH HOH A . D 4 HOH 107 107 107 HOH HOH A . D 4 HOH 108 108 108 HOH HOH A . D 4 HOH 109 109 109 HOH HOH A . D 4 HOH 110 110 110 HOH HOH A . D 4 HOH 111 111 111 HOH HOH A . D 4 HOH 112 112 112 HOH HOH A . D 4 HOH 113 113 113 HOH HOH A . D 4 HOH 114 114 114 HOH HOH A . D 4 HOH 115 115 115 HOH HOH A . D 4 HOH 116 116 116 HOH HOH A . D 4 HOH 117 117 117 HOH HOH A . D 4 HOH 118 118 118 HOH HOH A . D 4 HOH 119 119 119 HOH HOH A . D 4 HOH 120 120 120 HOH HOH A . D 4 HOH 121 121 121 HOH HOH A . D 4 HOH 122 122 122 HOH HOH A . D 4 HOH 123 123 123 HOH HOH A . D 4 HOH 124 124 124 HOH HOH A . D 4 HOH 125 125 125 HOH HOH A . D 4 HOH 126 126 126 HOH HOH A . D 4 HOH 127 127 127 HOH HOH A . D 4 HOH 128 128 128 HOH HOH A . D 4 HOH 129 129 129 HOH HOH A . D 4 HOH 130 130 130 HOH HOH A . D 4 HOH 131 131 131 HOH HOH A . D 4 HOH 132 132 132 HOH HOH A . D 4 HOH 133 133 133 HOH HOH A . D 4 HOH 134 134 134 HOH HOH A . D 4 HOH 135 135 135 HOH HOH A . D 4 HOH 136 136 136 HOH HOH A . D 4 HOH 137 137 137 HOH HOH A . D 4 HOH 138 138 138 HOH HOH A . D 4 HOH 139 139 139 HOH HOH A . D 4 HOH 140 140 140 HOH HOH A . D 4 HOH 141 141 141 HOH HOH A . D 4 HOH 142 142 142 HOH HOH A . D 4 HOH 143 143 143 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id NI _pdbx_struct_special_symmetry.auth_seq_id 401 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id C _pdbx_struct_special_symmetry.label_comp_id NI _pdbx_struct_special_symmetry.label_seq_id . # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id D _pdbx_struct_conn_angle.ptnr1_label_comp_id HOH _pdbx_struct_conn_angle.ptnr1_label_seq_id . _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id A _pdbx_struct_conn_angle.ptnr1_auth_comp_id HOH _pdbx_struct_conn_angle.ptnr1_auth_seq_id 17 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id NI _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id C _pdbx_struct_conn_angle.ptnr2_label_comp_id NI _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id A _pdbx_struct_conn_angle.ptnr2_auth_comp_id NI _pdbx_struct_conn_angle.ptnr2_auth_seq_id 401 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id NE2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id A _pdbx_struct_conn_angle.ptnr3_label_comp_id HIS _pdbx_struct_conn_angle.ptnr3_label_seq_id 135 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id A _pdbx_struct_conn_angle.ptnr3_auth_comp_id HIS _pdbx_struct_conn_angle.ptnr3_auth_seq_id 320 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 91.7 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 2 0 2020-07-29 4 'Structure model' 2 1 2023-11-01 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Refinement description' 9 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' chem_comp 3 3 'Structure model' entity 4 3 'Structure model' pdbx_branch_scheme 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_branch 7 3 'Structure model' pdbx_entity_branch_descriptor 8 3 'Structure model' pdbx_entity_branch_link 9 3 'Structure model' pdbx_entity_branch_list 10 3 'Structure model' pdbx_entity_nonpoly 11 3 'Structure model' pdbx_nonpoly_scheme 12 3 'Structure model' pdbx_struct_assembly_gen 13 3 'Structure model' pdbx_struct_conn_angle 14 3 'Structure model' pdbx_struct_special_symmetry 15 3 'Structure model' struct_asym 16 3 'Structure model' struct_conn 17 3 'Structure model' struct_site 18 3 'Structure model' struct_site_gen 19 4 'Structure model' chem_comp 20 4 'Structure model' chem_comp_atom 21 4 'Structure model' chem_comp_bond 22 4 'Structure model' database_2 23 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.auth_asym_id' 6 3 'Structure model' '_atom_site.auth_atom_id' 7 3 'Structure model' '_atom_site.auth_comp_id' 8 3 'Structure model' '_atom_site.auth_seq_id' 9 3 'Structure model' '_atom_site.label_asym_id' 10 3 'Structure model' '_atom_site.label_atom_id' 11 3 'Structure model' '_atom_site.label_comp_id' 12 3 'Structure model' '_atom_site.label_entity_id' 13 3 'Structure model' '_atom_site.occupancy' 14 3 'Structure model' '_atom_site.type_symbol' 15 3 'Structure model' '_chem_comp.name' 16 3 'Structure model' '_chem_comp.type' 17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 26 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 27 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 28 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 29 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 30 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 31 3 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 32 3 'Structure model' '_struct_conn.pdbx_dist_value' 33 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 34 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 35 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 36 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 37 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 38 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 39 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 40 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 41 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 42 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 43 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 44 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 45 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 46 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 47 4 'Structure model' '_chem_comp.pdbx_synonyms' 48 4 'Structure model' '_database_2.pdbx_DOI' 49 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 CNS refinement 1.1 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3NV3 _pdbx_entry_details.nonpolymer_details 'THE LIGANDS GAL, NAG AND MAN FORM BIANTENNARY OLIGOSACCHARIDE.' _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 189 ? ? -64.87 -164.87 2 1 SER A 206 ? ? 88.12 -3.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR 186 ? A TYR 1 2 1 Y 1 A PRO 187 ? A PRO 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GAL C1 C N R 88 GAL C2 C N R 89 GAL C3 C N S 90 GAL C4 C N R 91 GAL C5 C N R 92 GAL C6 C N N 93 GAL O1 O N N 94 GAL O2 O N N 95 GAL O3 O N N 96 GAL O4 O N N 97 GAL O5 O N N 98 GAL O6 O N N 99 GAL H1 H N N 100 GAL H2 H N N 101 GAL H3 H N N 102 GAL H4 H N N 103 GAL H5 H N N 104 GAL H61 H N N 105 GAL H62 H N N 106 GAL HO1 H N N 107 GAL HO2 H N N 108 GAL HO3 H N N 109 GAL HO4 H N N 110 GAL HO6 H N N 111 GLN N N N N 112 GLN CA C N S 113 GLN C C N N 114 GLN O O N N 115 GLN CB C N N 116 GLN CG C N N 117 GLN CD C N N 118 GLN OE1 O N N 119 GLN NE2 N N N 120 GLN OXT O N N 121 GLN H H N N 122 GLN H2 H N N 123 GLN HA H N N 124 GLN HB2 H N N 125 GLN HB3 H N N 126 GLN HG2 H N N 127 GLN HG3 H N N 128 GLN HE21 H N N 129 GLN HE22 H N N 130 GLN HXT H N N 131 GLU N N N N 132 GLU CA C N S 133 GLU C C N N 134 GLU O O N N 135 GLU CB C N N 136 GLU CG C N N 137 GLU CD C N N 138 GLU OE1 O N N 139 GLU OE2 O N N 140 GLU OXT O N N 141 GLU H H N N 142 GLU H2 H N N 143 GLU HA H N N 144 GLU HB2 H N N 145 GLU HB3 H N N 146 GLU HG2 H N N 147 GLU HG3 H N N 148 GLU HE2 H N N 149 GLU HXT H N N 150 GLY N N N N 151 GLY CA C N N 152 GLY C C N N 153 GLY O O N N 154 GLY OXT O N N 155 GLY H H N N 156 GLY H2 H N N 157 GLY HA2 H N N 158 GLY HA3 H N N 159 GLY HXT H N N 160 HIS N N N N 161 HIS CA C N S 162 HIS C C N N 163 HIS O O N N 164 HIS CB C N N 165 HIS CG C Y N 166 HIS ND1 N Y N 167 HIS CD2 C Y N 168 HIS CE1 C Y N 169 HIS NE2 N Y N 170 HIS OXT O N N 171 HIS H H N N 172 HIS H2 H N N 173 HIS HA H N N 174 HIS HB2 H N N 175 HIS HB3 H N N 176 HIS HD1 H N N 177 HIS HD2 H N N 178 HIS HE1 H N N 179 HIS HE2 H N N 180 HIS HXT H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 ILE N N N N 185 ILE CA C N S 186 ILE C C N N 187 ILE O O N N 188 ILE CB C N S 189 ILE CG1 C N N 190 ILE CG2 C N N 191 ILE CD1 C N N 192 ILE OXT O N N 193 ILE H H N N 194 ILE H2 H N N 195 ILE HA H N N 196 ILE HB H N N 197 ILE HG12 H N N 198 ILE HG13 H N N 199 ILE HG21 H N N 200 ILE HG22 H N N 201 ILE HG23 H N N 202 ILE HD11 H N N 203 ILE HD12 H N N 204 ILE HD13 H N N 205 ILE HXT H N N 206 LEU N N N N 207 LEU CA C N S 208 LEU C C N N 209 LEU O O N N 210 LEU CB C N N 211 LEU CG C N N 212 LEU CD1 C N N 213 LEU CD2 C N N 214 LEU OXT O N N 215 LEU H H N N 216 LEU H2 H N N 217 LEU HA H N N 218 LEU HB2 H N N 219 LEU HB3 H N N 220 LEU HG H N N 221 LEU HD11 H N N 222 LEU HD12 H N N 223 LEU HD13 H N N 224 LEU HD21 H N N 225 LEU HD22 H N N 226 LEU HD23 H N N 227 LEU HXT H N N 228 LYS N N N N 229 LYS CA C N S 230 LYS C C N N 231 LYS O O N N 232 LYS CB C N N 233 LYS CG C N N 234 LYS CD C N N 235 LYS CE C N N 236 LYS NZ N N N 237 LYS OXT O N N 238 LYS H H N N 239 LYS H2 H N N 240 LYS HA H N N 241 LYS HB2 H N N 242 LYS HB3 H N N 243 LYS HG2 H N N 244 LYS HG3 H N N 245 LYS HD2 H N N 246 LYS HD3 H N N 247 LYS HE2 H N N 248 LYS HE3 H N N 249 LYS HZ1 H N N 250 LYS HZ2 H N N 251 LYS HZ3 H N N 252 LYS HXT H N N 253 MAN C1 C N S 254 MAN C2 C N S 255 MAN C3 C N S 256 MAN C4 C N S 257 MAN C5 C N R 258 MAN C6 C N N 259 MAN O1 O N N 260 MAN O2 O N N 261 MAN O3 O N N 262 MAN O4 O N N 263 MAN O5 O N N 264 MAN O6 O N N 265 MAN H1 H N N 266 MAN H2 H N N 267 MAN H3 H N N 268 MAN H4 H N N 269 MAN H5 H N N 270 MAN H61 H N N 271 MAN H62 H N N 272 MAN HO1 H N N 273 MAN HO2 H N N 274 MAN HO3 H N N 275 MAN HO4 H N N 276 MAN HO6 H N N 277 MET N N N N 278 MET CA C N S 279 MET C C N N 280 MET O O N N 281 MET CB C N N 282 MET CG C N N 283 MET SD S N N 284 MET CE C N N 285 MET OXT O N N 286 MET H H N N 287 MET H2 H N N 288 MET HA H N N 289 MET HB2 H N N 290 MET HB3 H N N 291 MET HG2 H N N 292 MET HG3 H N N 293 MET HE1 H N N 294 MET HE2 H N N 295 MET HE3 H N N 296 MET HXT H N N 297 NAG C1 C N R 298 NAG C2 C N R 299 NAG C3 C N R 300 NAG C4 C N S 301 NAG C5 C N R 302 NAG C6 C N N 303 NAG C7 C N N 304 NAG C8 C N N 305 NAG N2 N N N 306 NAG O1 O N N 307 NAG O3 O N N 308 NAG O4 O N N 309 NAG O5 O N N 310 NAG O6 O N N 311 NAG O7 O N N 312 NAG H1 H N N 313 NAG H2 H N N 314 NAG H3 H N N 315 NAG H4 H N N 316 NAG H5 H N N 317 NAG H61 H N N 318 NAG H62 H N N 319 NAG H81 H N N 320 NAG H82 H N N 321 NAG H83 H N N 322 NAG HN2 H N N 323 NAG HO1 H N N 324 NAG HO3 H N N 325 NAG HO4 H N N 326 NAG HO6 H N N 327 NI NI NI N N 328 PHE N N N N 329 PHE CA C N S 330 PHE C C N N 331 PHE O O N N 332 PHE CB C N N 333 PHE CG C Y N 334 PHE CD1 C Y N 335 PHE CD2 C Y N 336 PHE CE1 C Y N 337 PHE CE2 C Y N 338 PHE CZ C Y N 339 PHE OXT O N N 340 PHE H H N N 341 PHE H2 H N N 342 PHE HA H N N 343 PHE HB2 H N N 344 PHE HB3 H N N 345 PHE HD1 H N N 346 PHE HD2 H N N 347 PHE HE1 H N N 348 PHE HE2 H N N 349 PHE HZ H N N 350 PHE HXT H N N 351 PRO N N N N 352 PRO CA C N S 353 PRO C C N N 354 PRO O O N N 355 PRO CB C N N 356 PRO CG C N N 357 PRO CD C N N 358 PRO OXT O N N 359 PRO H H N N 360 PRO HA H N N 361 PRO HB2 H N N 362 PRO HB3 H N N 363 PRO HG2 H N N 364 PRO HG3 H N N 365 PRO HD2 H N N 366 PRO HD3 H N N 367 PRO HXT H N N 368 SER N N N N 369 SER CA C N S 370 SER C C N N 371 SER O O N N 372 SER CB C N N 373 SER OG O N N 374 SER OXT O N N 375 SER H H N N 376 SER H2 H N N 377 SER HA H N N 378 SER HB2 H N N 379 SER HB3 H N N 380 SER HG H N N 381 SER HXT H N N 382 THR N N N N 383 THR CA C N S 384 THR C C N N 385 THR O O N N 386 THR CB C N R 387 THR OG1 O N N 388 THR CG2 C N N 389 THR OXT O N N 390 THR H H N N 391 THR H2 H N N 392 THR HA H N N 393 THR HB H N N 394 THR HG1 H N N 395 THR HG21 H N N 396 THR HG22 H N N 397 THR HG23 H N N 398 THR HXT H N N 399 TRP N N N N 400 TRP CA C N S 401 TRP C C N N 402 TRP O O N N 403 TRP CB C N N 404 TRP CG C Y N 405 TRP CD1 C Y N 406 TRP CD2 C Y N 407 TRP NE1 N Y N 408 TRP CE2 C Y N 409 TRP CE3 C Y N 410 TRP CZ2 C Y N 411 TRP CZ3 C Y N 412 TRP CH2 C Y N 413 TRP OXT O N N 414 TRP H H N N 415 TRP H2 H N N 416 TRP HA H N N 417 TRP HB2 H N N 418 TRP HB3 H N N 419 TRP HD1 H N N 420 TRP HE1 H N N 421 TRP HE3 H N N 422 TRP HZ2 H N N 423 TRP HZ3 H N N 424 TRP HH2 H N N 425 TRP HXT H N N 426 TYR N N N N 427 TYR CA C N S 428 TYR C C N N 429 TYR O O N N 430 TYR CB C N N 431 TYR CG C Y N 432 TYR CD1 C Y N 433 TYR CD2 C Y N 434 TYR CE1 C Y N 435 TYR CE2 C Y N 436 TYR CZ C Y N 437 TYR OH O N N 438 TYR OXT O N N 439 TYR H H N N 440 TYR H2 H N N 441 TYR HA H N N 442 TYR HB2 H N N 443 TYR HB3 H N N 444 TYR HD1 H N N 445 TYR HD2 H N N 446 TYR HE1 H N N 447 TYR HE2 H N N 448 TYR HH H N N 449 TYR HXT H N N 450 VAL N N N N 451 VAL CA C N S 452 VAL C C N N 453 VAL O O N N 454 VAL CB C N N 455 VAL CG1 C N N 456 VAL CG2 C N N 457 VAL OXT O N N 458 VAL H H N N 459 VAL H2 H N N 460 VAL HA H N N 461 VAL HB H N N 462 VAL HG11 H N N 463 VAL HG12 H N N 464 VAL HG13 H N N 465 VAL HG21 H N N 466 VAL HG22 H N N 467 VAL HG23 H N N 468 VAL HXT H N N 469 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GAL C1 C2 sing N N 83 GAL C1 O1 sing N N 84 GAL C1 O5 sing N N 85 GAL C1 H1 sing N N 86 GAL C2 C3 sing N N 87 GAL C2 O2 sing N N 88 GAL C2 H2 sing N N 89 GAL C3 C4 sing N N 90 GAL C3 O3 sing N N 91 GAL C3 H3 sing N N 92 GAL C4 C5 sing N N 93 GAL C4 O4 sing N N 94 GAL C4 H4 sing N N 95 GAL C5 C6 sing N N 96 GAL C5 O5 sing N N 97 GAL C5 H5 sing N N 98 GAL C6 O6 sing N N 99 GAL C6 H61 sing N N 100 GAL C6 H62 sing N N 101 GAL O1 HO1 sing N N 102 GAL O2 HO2 sing N N 103 GAL O3 HO3 sing N N 104 GAL O4 HO4 sing N N 105 GAL O6 HO6 sing N N 106 GLN N CA sing N N 107 GLN N H sing N N 108 GLN N H2 sing N N 109 GLN CA C sing N N 110 GLN CA CB sing N N 111 GLN CA HA sing N N 112 GLN C O doub N N 113 GLN C OXT sing N N 114 GLN CB CG sing N N 115 GLN CB HB2 sing N N 116 GLN CB HB3 sing N N 117 GLN CG CD sing N N 118 GLN CG HG2 sing N N 119 GLN CG HG3 sing N N 120 GLN CD OE1 doub N N 121 GLN CD NE2 sing N N 122 GLN NE2 HE21 sing N N 123 GLN NE2 HE22 sing N N 124 GLN OXT HXT sing N N 125 GLU N CA sing N N 126 GLU N H sing N N 127 GLU N H2 sing N N 128 GLU CA C sing N N 129 GLU CA CB sing N N 130 GLU CA HA sing N N 131 GLU C O doub N N 132 GLU C OXT sing N N 133 GLU CB CG sing N N 134 GLU CB HB2 sing N N 135 GLU CB HB3 sing N N 136 GLU CG CD sing N N 137 GLU CG HG2 sing N N 138 GLU CG HG3 sing N N 139 GLU CD OE1 doub N N 140 GLU CD OE2 sing N N 141 GLU OE2 HE2 sing N N 142 GLU OXT HXT sing N N 143 GLY N CA sing N N 144 GLY N H sing N N 145 GLY N H2 sing N N 146 GLY CA C sing N N 147 GLY CA HA2 sing N N 148 GLY CA HA3 sing N N 149 GLY C O doub N N 150 GLY C OXT sing N N 151 GLY OXT HXT sing N N 152 HIS N CA sing N N 153 HIS N H sing N N 154 HIS N H2 sing N N 155 HIS CA C sing N N 156 HIS CA CB sing N N 157 HIS CA HA sing N N 158 HIS C O doub N N 159 HIS C OXT sing N N 160 HIS CB CG sing N N 161 HIS CB HB2 sing N N 162 HIS CB HB3 sing N N 163 HIS CG ND1 sing Y N 164 HIS CG CD2 doub Y N 165 HIS ND1 CE1 doub Y N 166 HIS ND1 HD1 sing N N 167 HIS CD2 NE2 sing Y N 168 HIS CD2 HD2 sing N N 169 HIS CE1 NE2 sing Y N 170 HIS CE1 HE1 sing N N 171 HIS NE2 HE2 sing N N 172 HIS OXT HXT sing N N 173 HOH O H1 sing N N 174 HOH O H2 sing N N 175 ILE N CA sing N N 176 ILE N H sing N N 177 ILE N H2 sing N N 178 ILE CA C sing N N 179 ILE CA CB sing N N 180 ILE CA HA sing N N 181 ILE C O doub N N 182 ILE C OXT sing N N 183 ILE CB CG1 sing N N 184 ILE CB CG2 sing N N 185 ILE CB HB sing N N 186 ILE CG1 CD1 sing N N 187 ILE CG1 HG12 sing N N 188 ILE CG1 HG13 sing N N 189 ILE CG2 HG21 sing N N 190 ILE CG2 HG22 sing N N 191 ILE CG2 HG23 sing N N 192 ILE CD1 HD11 sing N N 193 ILE CD1 HD12 sing N N 194 ILE CD1 HD13 sing N N 195 ILE OXT HXT sing N N 196 LEU N CA sing N N 197 LEU N H sing N N 198 LEU N H2 sing N N 199 LEU CA C sing N N 200 LEU CA CB sing N N 201 LEU CA HA sing N N 202 LEU C O doub N N 203 LEU C OXT sing N N 204 LEU CB CG sing N N 205 LEU CB HB2 sing N N 206 LEU CB HB3 sing N N 207 LEU CG CD1 sing N N 208 LEU CG CD2 sing N N 209 LEU CG HG sing N N 210 LEU CD1 HD11 sing N N 211 LEU CD1 HD12 sing N N 212 LEU CD1 HD13 sing N N 213 LEU CD2 HD21 sing N N 214 LEU CD2 HD22 sing N N 215 LEU CD2 HD23 sing N N 216 LEU OXT HXT sing N N 217 LYS N CA sing N N 218 LYS N H sing N N 219 LYS N H2 sing N N 220 LYS CA C sing N N 221 LYS CA CB sing N N 222 LYS CA HA sing N N 223 LYS C O doub N N 224 LYS C OXT sing N N 225 LYS CB CG sing N N 226 LYS CB HB2 sing N N 227 LYS CB HB3 sing N N 228 LYS CG CD sing N N 229 LYS CG HG2 sing N N 230 LYS CG HG3 sing N N 231 LYS CD CE sing N N 232 LYS CD HD2 sing N N 233 LYS CD HD3 sing N N 234 LYS CE NZ sing N N 235 LYS CE HE2 sing N N 236 LYS CE HE3 sing N N 237 LYS NZ HZ1 sing N N 238 LYS NZ HZ2 sing N N 239 LYS NZ HZ3 sing N N 240 LYS OXT HXT sing N N 241 MAN C1 C2 sing N N 242 MAN C1 O1 sing N N 243 MAN C1 O5 sing N N 244 MAN C1 H1 sing N N 245 MAN C2 C3 sing N N 246 MAN C2 O2 sing N N 247 MAN C2 H2 sing N N 248 MAN C3 C4 sing N N 249 MAN C3 O3 sing N N 250 MAN C3 H3 sing N N 251 MAN C4 C5 sing N N 252 MAN C4 O4 sing N N 253 MAN C4 H4 sing N N 254 MAN C5 C6 sing N N 255 MAN C5 O5 sing N N 256 MAN C5 H5 sing N N 257 MAN C6 O6 sing N N 258 MAN C6 H61 sing N N 259 MAN C6 H62 sing N N 260 MAN O1 HO1 sing N N 261 MAN O2 HO2 sing N N 262 MAN O3 HO3 sing N N 263 MAN O4 HO4 sing N N 264 MAN O6 HO6 sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 NAG C1 C2 sing N N 285 NAG C1 O1 sing N N 286 NAG C1 O5 sing N N 287 NAG C1 H1 sing N N 288 NAG C2 C3 sing N N 289 NAG C2 N2 sing N N 290 NAG C2 H2 sing N N 291 NAG C3 C4 sing N N 292 NAG C3 O3 sing N N 293 NAG C3 H3 sing N N 294 NAG C4 C5 sing N N 295 NAG C4 O4 sing N N 296 NAG C4 H4 sing N N 297 NAG C5 C6 sing N N 298 NAG C5 O5 sing N N 299 NAG C5 H5 sing N N 300 NAG C6 O6 sing N N 301 NAG C6 H61 sing N N 302 NAG C6 H62 sing N N 303 NAG C7 C8 sing N N 304 NAG C7 N2 sing N N 305 NAG C7 O7 doub N N 306 NAG C8 H81 sing N N 307 NAG C8 H82 sing N N 308 NAG C8 H83 sing N N 309 NAG N2 HN2 sing N N 310 NAG O1 HO1 sing N N 311 NAG O3 HO3 sing N N 312 NAG O4 HO4 sing N N 313 NAG O6 HO6 sing N N 314 PHE N CA sing N N 315 PHE N H sing N N 316 PHE N H2 sing N N 317 PHE CA C sing N N 318 PHE CA CB sing N N 319 PHE CA HA sing N N 320 PHE C O doub N N 321 PHE C OXT sing N N 322 PHE CB CG sing N N 323 PHE CB HB2 sing N N 324 PHE CB HB3 sing N N 325 PHE CG CD1 doub Y N 326 PHE CG CD2 sing Y N 327 PHE CD1 CE1 sing Y N 328 PHE CD1 HD1 sing N N 329 PHE CD2 CE2 doub Y N 330 PHE CD2 HD2 sing N N 331 PHE CE1 CZ doub Y N 332 PHE CE1 HE1 sing N N 333 PHE CE2 CZ sing Y N 334 PHE CE2 HE2 sing N N 335 PHE CZ HZ sing N N 336 PHE OXT HXT sing N N 337 PRO N CA sing N N 338 PRO N CD sing N N 339 PRO N H sing N N 340 PRO CA C sing N N 341 PRO CA CB sing N N 342 PRO CA HA sing N N 343 PRO C O doub N N 344 PRO C OXT sing N N 345 PRO CB CG sing N N 346 PRO CB HB2 sing N N 347 PRO CB HB3 sing N N 348 PRO CG CD sing N N 349 PRO CG HG2 sing N N 350 PRO CG HG3 sing N N 351 PRO CD HD2 sing N N 352 PRO CD HD3 sing N N 353 PRO OXT HXT sing N N 354 SER N CA sing N N 355 SER N H sing N N 356 SER N H2 sing N N 357 SER CA C sing N N 358 SER CA CB sing N N 359 SER CA HA sing N N 360 SER C O doub N N 361 SER C OXT sing N N 362 SER CB OG sing N N 363 SER CB HB2 sing N N 364 SER CB HB3 sing N N 365 SER OG HG sing N N 366 SER OXT HXT sing N N 367 THR N CA sing N N 368 THR N H sing N N 369 THR N H2 sing N N 370 THR CA C sing N N 371 THR CA CB sing N N 372 THR CA HA sing N N 373 THR C O doub N N 374 THR C OXT sing N N 375 THR CB OG1 sing N N 376 THR CB CG2 sing N N 377 THR CB HB sing N N 378 THR OG1 HG1 sing N N 379 THR CG2 HG21 sing N N 380 THR CG2 HG22 sing N N 381 THR CG2 HG23 sing N N 382 THR OXT HXT sing N N 383 TRP N CA sing N N 384 TRP N H sing N N 385 TRP N H2 sing N N 386 TRP CA C sing N N 387 TRP CA CB sing N N 388 TRP CA HA sing N N 389 TRP C O doub N N 390 TRP C OXT sing N N 391 TRP CB CG sing N N 392 TRP CB HB2 sing N N 393 TRP CB HB3 sing N N 394 TRP CG CD1 doub Y N 395 TRP CG CD2 sing Y N 396 TRP CD1 NE1 sing Y N 397 TRP CD1 HD1 sing N N 398 TRP CD2 CE2 doub Y N 399 TRP CD2 CE3 sing Y N 400 TRP NE1 CE2 sing Y N 401 TRP NE1 HE1 sing N N 402 TRP CE2 CZ2 sing Y N 403 TRP CE3 CZ3 doub Y N 404 TRP CE3 HE3 sing N N 405 TRP CZ2 CH2 doub Y N 406 TRP CZ2 HZ2 sing N N 407 TRP CZ3 CH2 sing Y N 408 TRP CZ3 HZ3 sing N N 409 TRP CH2 HH2 sing N N 410 TRP OXT HXT sing N N 411 TYR N CA sing N N 412 TYR N H sing N N 413 TYR N H2 sing N N 414 TYR CA C sing N N 415 TYR CA CB sing N N 416 TYR CA HA sing N N 417 TYR C O doub N N 418 TYR C OXT sing N N 419 TYR CB CG sing N N 420 TYR CB HB2 sing N N 421 TYR CB HB3 sing N N 422 TYR CG CD1 doub Y N 423 TYR CG CD2 sing Y N 424 TYR CD1 CE1 sing Y N 425 TYR CD1 HD1 sing N N 426 TYR CD2 CE2 doub Y N 427 TYR CD2 HD2 sing N N 428 TYR CE1 CZ doub Y N 429 TYR CE1 HE1 sing N N 430 TYR CE2 CZ sing Y N 431 TYR CE2 HE2 sing N N 432 TYR CZ OH sing N N 433 TYR OH HH sing N N 434 TYR OXT HXT sing N N 435 VAL N CA sing N N 436 VAL N H sing N N 437 VAL N H2 sing N N 438 VAL CA C sing N N 439 VAL CA CB sing N N 440 VAL CA HA sing N N 441 VAL C O doub N N 442 VAL C OXT sing N N 443 VAL CB CG1 sing N N 444 VAL CB CG2 sing N N 445 VAL CB HB sing N N 446 VAL CG1 HG11 sing N N 447 VAL CG1 HG12 sing N N 448 VAL CG1 HG13 sing N N 449 VAL CG2 HG21 sing N N 450 VAL CG2 HG22 sing N N 451 VAL CG2 HG23 sing N N 452 VAL OXT HXT sing N N 453 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 MAN 1 B MAN 1 L MAN 503 n B 2 NAG 2 B NAG 2 L NAG 502 n B 2 GAL 3 B GAL 3 L GAL 501 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpb1-4DGlcpNAcb1-2DManpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/3,3,2/[a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3/a2-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 MAN O2 HO2 sing ? 2 2 3 GAL C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 NAG 2 n 2 GAL 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'NICKEL (II) ION' NI 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3KOE _pdbx_initial_refinement_model.details 'PDB entry 3KOE' #