data_3NV4
#
_entry.id 3NV4
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.380
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 3NV4 pdb_00003nv4 10.2210/pdb3nv4/pdb
RCSB RCSB060316 ? ?
WWPDB D_1000060316 ? ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 3NV1 'The same protein without ligand' unspecified
PDB 3NV2 'The same protein with N-acetyllactosamine' unspecified
PDB 3NV3 'The same protein with biantennary oligosaccharide' unspecified
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 3NV4
_pdbx_database_status.recvd_initial_deposition_date 2010-07-07
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site PDBJ
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.status_code_nmr_data ?
_pdbx_database_status.methods_development_category ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Yoshida, H.' 1
'Kamitori, S.' 2
#
_citation.id primary
_citation.title
'X-ray structures of human galectin-9 C-terminal domain in complexes with a biantennary oligosaccharide and sialyllactose'
_citation.journal_abbrev J.Biol.Chem.
_citation.journal_volume 285
_citation.page_first 36969
_citation.page_last 36976
_citation.year 2010
_citation.journal_id_ASTM JBCHA3
_citation.country US
_citation.journal_id_ISSN 0021-9258
_citation.journal_id_CSD 0071
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 20861009
_citation.pdbx_database_id_DOI 10.1074/jbc.M110.163402
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Yoshida, H.' 1 ?
primary 'Teraoka, M.' 2 ?
primary 'Nishi, N.' 3 ?
primary 'Nakakita, S.' 4 ?
primary 'Nakamura, T.' 5 ?
primary 'Hirashima, M.' 6 ?
primary 'Kamitori, S.' 7 ?
#
_cell.entry_id 3NV4
_cell.length_a 70.766
_cell.length_b 70.766
_cell.length_c 50.480
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 120.00
_cell.Z_PDB 6
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 3NV4
_symmetry.space_group_name_H-M 'P 63'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 173
_symmetry.space_group_name_Hall ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'Galectin 9 short isoform variant' 15729.982 1 ? ?
'C-terminal carbohydrate recognition domain, residues 186-323' ?
2 branched man 'N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose' 633.552 1 ? ? ? ?
3 non-polymer syn 'NICKEL (II) ION' 58.693 1 ? ? ? ?
4 water nat water 18.015 128 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name Galectin-9
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK
MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT
;
_entity_poly.pdbx_seq_one_letter_code_can
;YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK
MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 TYR n
1 2 PRO n
1 3 HIS n
1 4 PRO n
1 5 ALA n
1 6 TYR n
1 7 PRO n
1 8 MET n
1 9 PRO n
1 10 PHE n
1 11 ILE n
1 12 THR n
1 13 THR n
1 14 ILE n
1 15 LEU n
1 16 GLY n
1 17 GLY n
1 18 LEU n
1 19 TYR n
1 20 PRO n
1 21 SER n
1 22 LYS n
1 23 SER n
1 24 ILE n
1 25 LEU n
1 26 LEU n
1 27 SER n
1 28 GLY n
1 29 THR n
1 30 VAL n
1 31 LEU n
1 32 PRO n
1 33 SER n
1 34 ALA n
1 35 GLN n
1 36 ARG n
1 37 PHE n
1 38 HIS n
1 39 ILE n
1 40 ASN n
1 41 LEU n
1 42 CYS n
1 43 SER n
1 44 GLY n
1 45 ASN n
1 46 HIS n
1 47 ILE n
1 48 ALA n
1 49 PHE n
1 50 HIS n
1 51 LEU n
1 52 ASN n
1 53 PRO n
1 54 ARG n
1 55 PHE n
1 56 ASP n
1 57 GLU n
1 58 ASN n
1 59 ALA n
1 60 VAL n
1 61 VAL n
1 62 ARG n
1 63 ASN n
1 64 THR n
1 65 GLN n
1 66 ILE n
1 67 ASP n
1 68 ASN n
1 69 SER n
1 70 TRP n
1 71 GLY n
1 72 SER n
1 73 GLU n
1 74 GLU n
1 75 ARG n
1 76 SER n
1 77 LEU n
1 78 PRO n
1 79 ARG n
1 80 LYS n
1 81 MET n
1 82 PRO n
1 83 PHE n
1 84 VAL n
1 85 ARG n
1 86 GLY n
1 87 GLN n
1 88 SER n
1 89 PHE n
1 90 SER n
1 91 VAL n
1 92 TRP n
1 93 ILE n
1 94 LEU n
1 95 CYS n
1 96 GLU n
1 97 ALA n
1 98 HIS n
1 99 CYS n
1 100 LEU n
1 101 LYS n
1 102 VAL n
1 103 ALA n
1 104 VAL n
1 105 ASP n
1 106 GLY n
1 107 GLN n
1 108 HIS n
1 109 LEU n
1 110 PHE n
1 111 GLU n
1 112 TYR n
1 113 TYR n
1 114 HIS n
1 115 ARG n
1 116 LEU n
1 117 ARG n
1 118 ASN n
1 119 LEU n
1 120 PRO n
1 121 THR n
1 122 ILE n
1 123 ASN n
1 124 ARG n
1 125 LEU n
1 126 GLU n
1 127 VAL n
1 128 GLY n
1 129 GLY n
1 130 ASP n
1 131 ILE n
1 132 GLN n
1 133 LEU n
1 134 THR n
1 135 HIS n
1 136 VAL n
1 137 GLN n
1 138 THR n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21(DE3)'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type PLASMID
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pGEX-4T-2
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code Q53FQ0_HUMAN
_struct_ref.pdbx_db_accession Q53FQ0
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;YPHPAYPMPFITTILGGLYPSKSILLSGTVLPSAQRFHINLCSGNHIAFHLNPRFDENAVVRNTQIDNSWGSEERSLPRK
MPFVRGQSFSVWILCEAHCLKVAVDGQHLFEYYHRLRNLPTINRLEVGGDIQLTHVQT
;
_struct_ref.pdbx_align_begin 218
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 3NV4
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 138
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession Q53FQ0
_struct_ref_seq.db_align_beg 186
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 323
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 186
_struct_ref_seq.pdbx_auth_seq_align_end 323
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
BGC 'D-saccharide, beta linking' . beta-D-glucopyranose 'beta-D-glucose; D-glucose; glucose' 'C6 H12 O6' 180.156
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GAL 'D-saccharide, beta linking' . beta-D-galactopyranose 'beta-D-galactose; D-galactose; galactose' 'C6 H12 O6'
180.156
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211
NI non-polymer . 'NICKEL (II) ION' ? 'Ni 2' 58.693
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
SIA 'D-saccharide, alpha linking' . 'N-acetyl-alpha-neuraminic acid'
'N-acetylneuraminic acid; sialic acid; alpha-sialic acid; O-SIALIC ACID' 'C11 H19 N O9' 309.270
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
#
_exptl.entry_id 3NV4
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number 1
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.32
_exptl_crystal.density_percent_sol 46.97
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pH 8.5
_exptl_crystal_grow.pdbx_details
'20% PEG MME 2000, 0.1M Tris pH 8.5, 0.01M nickel chloride hexahydrate, VAPOR DIFFUSION, HANGING DROP, temperature 293K'
_exptl_crystal_grow.pdbx_pH_range .
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 210r'
_diffrn_detector.pdbx_collection_date 2010-02-28
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A'
_diffrn_source.pdbx_synchrotron_site 'Photon Factory'
_diffrn_source.pdbx_synchrotron_beamline AR-NW12A
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_wavelength_list 1.0
#
_reflns.entry_id 3NV4
_reflns.observed_criterion_sigma_I 0.0
_reflns.observed_criterion_sigma_F 0.0
_reflns.d_resolution_low 50
_reflns.d_resolution_high 1.99
_reflns.number_obs 9959
_reflns.number_all ?
_reflns.pdbx_number_measured_all 55160
_reflns.percent_possible_obs 99.7
_reflns.pdbx_Rmerge_I_obs 0.047
_reflns.pdbx_Rsym_value ?
_reflns.pdbx_netI_over_sigmaI 16.4
_reflns.B_iso_Wilson_estimate 15.1
_reflns.pdbx_redundancy 5.5
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_diffrn_id 1
_reflns.pdbx_ordinal 1
#
_reflns_shell.d_res_high 1.99
_reflns_shell.d_res_low 2.02
_reflns_shell.percent_possible_all 95.5
_reflns_shell.Rmerge_I_obs 0.215
_reflns_shell.pdbx_Rsym_value ?
_reflns_shell.meanI_over_sigI_obs 7.9
_reflns_shell.pdbx_redundancy 5.1
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_rejects ?
_reflns_shell.pdbx_netI_over_sigmaI_obs ?
_reflns_shell.number_possible ?
_reflns_shell.Rmerge_F_all ?
_reflns_shell.Rmerge_F_obs ?
_reflns_shell.Rmerge_I_all ?
_reflns_shell.meanI_over_sigI_all ?
_reflns_shell.pdbx_Rrim_I_all ?
_reflns_shell.pdbx_Rpim_I_all ?
_reflns_shell.pdbx_diffrn_id ?
_reflns_shell.pdbx_ordinal 1
#
_refine.entry_id 3NV4
_refine.ls_number_reflns_obs 9744
_refine.ls_number_reflns_all 9744
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 0.0
_refine.pdbx_data_cutoff_high_absF 175887.84
_refine.pdbx_data_cutoff_low_absF 0.000000
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 30.64
_refine.ls_d_res_high 1.99
_refine.ls_percent_reflns_obs 97.8
_refine.ls_R_factor_obs 0.183
_refine.ls_R_factor_all 0.188
_refine.ls_R_factor_R_work 0.183
_refine.ls_R_factor_R_free 0.226
_refine.ls_R_factor_R_free_error 0.007
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free 10.3
_refine.ls_number_reflns_R_free 1005
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.B_iso_mean 30.8
_refine.aniso_B[1][1] 1.04
_refine.aniso_B[2][2] 1.04
_refine.aniso_B[3][3] -2.09
_refine.aniso_B[1][2] 1.86
_refine.aniso_B[1][3] 0.00
_refine.aniso_B[2][3] 0.00
_refine.solvent_model_details 'FLAT MODEL'
_refine.solvent_model_param_ksol 0.39339
_refine.solvent_model_param_bsol 70.7596
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.pdbx_ls_cross_valid_method THROUGHOUT
_refine.details ?
_refine.pdbx_starting_model 'PDB entry 3KOE'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_isotropic_thermal_model RESTRAINED
_refine.pdbx_stereochemistry_target_values 'Engh & Huber'
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details RANDOM
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.ls_redundancy_reflns_obs ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_overall_phase_error ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_analyze.entry_id 3NV4
_refine_analyze.Luzzati_coordinate_error_obs 0.19
_refine_analyze.Luzzati_sigma_a_obs 0.09
_refine_analyze.Luzzati_d_res_low_obs 5.00
_refine_analyze.Luzzati_coordinate_error_free 0.25
_refine_analyze.Luzzati_sigma_a_free 0.14
_refine_analyze.Luzzati_d_res_low_free ?
_refine_analyze.number_disordered_residues ?
_refine_analyze.occupancy_sum_hydrogen ?
_refine_analyze.occupancy_sum_non_hydrogen ?
_refine_analyze.pdbx_Luzzati_d_res_high_obs ?
_refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION'
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1091
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 44
_refine_hist.number_atoms_solvent 128
_refine_hist.number_atoms_total 1263
_refine_hist.d_res_high 1.99
_refine_hist.d_res_low 30.64
#
loop_
_refine_ls_restr.type
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.number
_refine_ls_restr.pdbx_refine_id
_refine_ls_restr.pdbx_restraint_function
c_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ?
c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ?
c_dihedral_angle_d 26.3 ? ? ? 'X-RAY DIFFRACTION' ?
c_improper_angle_d 0.86 ? ? ? 'X-RAY DIFFRACTION' ?
#
_refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_ls_shell.pdbx_total_number_of_bins_used 6
_refine_ls_shell.d_res_high 1.99
_refine_ls_shell.d_res_low 2.11
_refine_ls_shell.number_reflns_R_work 1390
_refine_ls_shell.R_factor_R_work 0.184
_refine_ls_shell.percent_reflns_obs 93.6
_refine_ls_shell.R_factor_R_free 0.229
_refine_ls_shell.R_factor_R_free_error 0.018
_refine_ls_shell.percent_reflns_R_free 10.2
_refine_ls_shell.number_reflns_R_free 158
_refine_ls_shell.number_reflns_all ?
_refine_ls_shell.R_factor_all ?
_refine_ls_shell.number_reflns_obs 1390
_refine_ls_shell.redundancy_reflns_obs ?
#
loop_
_pdbx_xplor_file.pdbx_refine_id
_pdbx_xplor_file.serial_no
_pdbx_xplor_file.param_file
_pdbx_xplor_file.topol_file
'X-RAY DIFFRACTION' 1 protein_rep.param protein.top
'X-RAY DIFFRACTION' 2 carbohydrate.param carbohydrate.top
'X-RAY DIFFRACTION' 3 ion.param ion.top
'X-RAY DIFFRACTION' 4 water_rep.param water.top
#
_struct.entry_id 3NV4
_struct.title 'Crystal structure of human galectin-9 C-terminal CRD in complex with Sialyllactose'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 3NV4
_struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN'
_struct_keywords.text 'Sugar Binding, Sugar Binding Protein'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
#
_struct_biol.id 1
_struct_biol.details 'AUTHOR STATES THAT THE BIOLOGICAL ASSEMBLY IS UNKNOWN.'
#
_struct_conf.conf_type_id HELX_P
_struct_conf.id HELX_P1
_struct_conf.pdbx_PDB_helix_id 1
_struct_conf.beg_label_comp_id ASN
_struct_conf.beg_label_asym_id A
_struct_conf.beg_label_seq_id 118
_struct_conf.pdbx_beg_PDB_ins_code ?
_struct_conf.end_label_comp_id ILE
_struct_conf.end_label_asym_id A
_struct_conf.end_label_seq_id 122
_struct_conf.pdbx_end_PDB_ins_code ?
_struct_conf.beg_auth_comp_id ASN
_struct_conf.beg_auth_asym_id A
_struct_conf.beg_auth_seq_id 303
_struct_conf.end_auth_comp_id ILE
_struct_conf.end_auth_asym_id A
_struct_conf.end_auth_seq_id 307
_struct_conf.pdbx_PDB_helix_class 5
_struct_conf.details ?
_struct_conf.pdbx_PDB_helix_length 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale both ? B BGC . O4 ? ? ? 1_555 B GAL . C1 ? ? B BGC 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.384 ? ?
covale2 covale both ? B GAL . O3 ? ? ? 1_555 B SIA . C2 ? ? B GAL 2 B SIA 3 1_555 ? ? ? ? ? ? ? 1.384 ? ?
metalc1 metalc ? ? D HOH . O ? ? ? 1_555 C NI . NI ? ? A HOH 12 A NI 401 1_555 ? ? ? ? ? ? ? 2.149 ? ?
metalc2 metalc ? ? A HIS 135 NE2 ? ? ? 1_555 C NI . NI ? ? A HIS 320 A NI 401 1_555 ? ? ? ? ? ? ? 2.193 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id MET
_struct_mon_prot_cis.label_seq_id 8
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id MET
_struct_mon_prot_cis.auth_seq_id 193
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 9
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 194
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle 0.17
#
loop_
_struct_sheet.id
_struct_sheet.type
_struct_sheet.number_strands
_struct_sheet.details
A ? 6 ?
B ? 5 ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? anti-parallel
A 3 4 ? anti-parallel
A 4 5 ? anti-parallel
A 5 6 ? anti-parallel
B 1 2 ? anti-parallel
B 2 3 ? anti-parallel
B 3 4 ? anti-parallel
B 4 5 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 PHE A 10 ? THR A 13 ? PHE A 195 THR A 198
A 2 ARG A 124 ? GLY A 129 ? ARG A 309 GLY A 314
A 3 PHE A 37 ? SER A 43 ? PHE A 222 SER A 228
A 4 HIS A 46 ? ARG A 54 ? HIS A 231 ARG A 239
A 5 ALA A 59 ? ILE A 66 ? ALA A 244 ILE A 251
A 6 SER A 69 ? TRP A 70 ? SER A 254 TRP A 255
B 1 GLN A 107 ? TYR A 113 ? GLN A 292 TYR A 298
B 2 CYS A 99 ? VAL A 104 ? CYS A 284 VAL A 289
B 3 SER A 88 ? CYS A 95 ? SER A 273 CYS A 280
B 4 SER A 23 ? VAL A 30 ? SER A 208 VAL A 215
B 5 ILE A 131 ? GLN A 137 ? ILE A 316 GLN A 322
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N THR A 12 ? N THR A 197 O LEU A 125 ? O LEU A 310
A 2 3 O ARG A 124 ? O ARG A 309 N CYS A 42 ? N CYS A 227
A 3 4 N ILE A 39 ? N ILE A 224 O LEU A 51 ? O LEU A 236
A 4 5 N ARG A 54 ? N ARG A 239 O ALA A 59 ? O ALA A 244
A 5 6 N ILE A 66 ? N ILE A 251 O SER A 69 ? O SER A 254
B 1 2 O LEU A 109 ? O LEU A 294 N VAL A 102 ? N VAL A 287
B 2 3 O LYS A 101 ? O LYS A 286 N LEU A 94 ? N LEU A 279
B 3 4 O VAL A 91 ? O VAL A 276 N LEU A 26 ? N LEU A 211
B 4 5 N THR A 29 ? N THR A 214 O GLN A 132 ? O GLN A 317
#
_database_PDB_matrix.entry_id 3NV4
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_atom_sites.entry_id 3NV4
_atom_sites.fract_transf_matrix[1][1] 0.014131
_atom_sites.fract_transf_matrix[1][2] 0.008159
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.016317
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.019810
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
loop_
_atom_type.symbol
C
N
NI
O
S
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 TYR 1 186 ? ? ? A . n
A 1 2 PRO 2 187 ? ? ? A . n
A 1 3 HIS 3 188 188 HIS HIS A . n
A 1 4 PRO 4 189 189 PRO PRO A . n
A 1 5 ALA 5 190 190 ALA ALA A . n
A 1 6 TYR 6 191 191 TYR TYR A . n
A 1 7 PRO 7 192 192 PRO PRO A . n
A 1 8 MET 8 193 193 MET MET A . n
A 1 9 PRO 9 194 194 PRO PRO A . n
A 1 10 PHE 10 195 195 PHE PHE A . n
A 1 11 ILE 11 196 196 ILE ILE A . n
A 1 12 THR 12 197 197 THR THR A . n
A 1 13 THR 13 198 198 THR THR A . n
A 1 14 ILE 14 199 199 ILE ILE A . n
A 1 15 LEU 15 200 200 LEU LEU A . n
A 1 16 GLY 16 201 201 GLY GLY A . n
A 1 17 GLY 17 202 202 GLY GLY A . n
A 1 18 LEU 18 203 203 LEU LEU A . n
A 1 19 TYR 19 204 204 TYR TYR A . n
A 1 20 PRO 20 205 205 PRO PRO A . n
A 1 21 SER 21 206 206 SER SER A . n
A 1 22 LYS 22 207 207 LYS LYS A . n
A 1 23 SER 23 208 208 SER SER A . n
A 1 24 ILE 24 209 209 ILE ILE A . n
A 1 25 LEU 25 210 210 LEU LEU A . n
A 1 26 LEU 26 211 211 LEU LEU A . n
A 1 27 SER 27 212 212 SER SER A . n
A 1 28 GLY 28 213 213 GLY GLY A . n
A 1 29 THR 29 214 214 THR THR A . n
A 1 30 VAL 30 215 215 VAL VAL A . n
A 1 31 LEU 31 216 216 LEU LEU A . n
A 1 32 PRO 32 217 217 PRO PRO A . n
A 1 33 SER 33 218 218 SER SER A . n
A 1 34 ALA 34 219 219 ALA ALA A . n
A 1 35 GLN 35 220 220 GLN GLN A . n
A 1 36 ARG 36 221 221 ARG ARG A . n
A 1 37 PHE 37 222 222 PHE PHE A . n
A 1 38 HIS 38 223 223 HIS HIS A . n
A 1 39 ILE 39 224 224 ILE ILE A . n
A 1 40 ASN 40 225 225 ASN ASN A . n
A 1 41 LEU 41 226 226 LEU LEU A . n
A 1 42 CYS 42 227 227 CYS CYS A . n
A 1 43 SER 43 228 228 SER SER A . n
A 1 44 GLY 44 229 229 GLY GLY A . n
A 1 45 ASN 45 230 230 ASN ASN A . n
A 1 46 HIS 46 231 231 HIS HIS A . n
A 1 47 ILE 47 232 232 ILE ILE A . n
A 1 48 ALA 48 233 233 ALA ALA A . n
A 1 49 PHE 49 234 234 PHE PHE A . n
A 1 50 HIS 50 235 235 HIS HIS A . n
A 1 51 LEU 51 236 236 LEU LEU A . n
A 1 52 ASN 52 237 237 ASN ASN A . n
A 1 53 PRO 53 238 238 PRO PRO A . n
A 1 54 ARG 54 239 239 ARG ARG A . n
A 1 55 PHE 55 240 240 PHE PHE A . n
A 1 56 ASP 56 241 241 ASP ASP A . n
A 1 57 GLU 57 242 242 GLU GLU A . n
A 1 58 ASN 58 243 243 ASN ASN A . n
A 1 59 ALA 59 244 244 ALA ALA A . n
A 1 60 VAL 60 245 245 VAL VAL A . n
A 1 61 VAL 61 246 246 VAL VAL A . n
A 1 62 ARG 62 247 247 ARG ARG A . n
A 1 63 ASN 63 248 248 ASN ASN A . n
A 1 64 THR 64 249 249 THR THR A . n
A 1 65 GLN 65 250 250 GLN GLN A . n
A 1 66 ILE 66 251 251 ILE ILE A . n
A 1 67 ASP 67 252 252 ASP ASP A . n
A 1 68 ASN 68 253 253 ASN ASN A . n
A 1 69 SER 69 254 254 SER SER A . n
A 1 70 TRP 70 255 255 TRP TRP A . n
A 1 71 GLY 71 256 256 GLY GLY A . n
A 1 72 SER 72 257 257 SER SER A . n
A 1 73 GLU 73 258 258 GLU GLU A . n
A 1 74 GLU 74 259 259 GLU GLU A . n
A 1 75 ARG 75 260 260 ARG ARG A . n
A 1 76 SER 76 261 261 SER SER A . n
A 1 77 LEU 77 262 262 LEU LEU A . n
A 1 78 PRO 78 263 263 PRO PRO A . n
A 1 79 ARG 79 264 264 ARG ARG A . n
A 1 80 LYS 80 265 265 LYS LYS A . n
A 1 81 MET 81 266 266 MET MET A . n
A 1 82 PRO 82 267 267 PRO PRO A . n
A 1 83 PHE 83 268 268 PHE PHE A . n
A 1 84 VAL 84 269 269 VAL VAL A . n
A 1 85 ARG 85 270 270 ARG ARG A . n
A 1 86 GLY 86 271 271 GLY GLY A . n
A 1 87 GLN 87 272 272 GLN GLN A . n
A 1 88 SER 88 273 273 SER SER A . n
A 1 89 PHE 89 274 274 PHE PHE A . n
A 1 90 SER 90 275 275 SER SER A . n
A 1 91 VAL 91 276 276 VAL VAL A . n
A 1 92 TRP 92 277 277 TRP TRP A . n
A 1 93 ILE 93 278 278 ILE ILE A . n
A 1 94 LEU 94 279 279 LEU LEU A . n
A 1 95 CYS 95 280 280 CYS CYS A . n
A 1 96 GLU 96 281 281 GLU GLU A . n
A 1 97 ALA 97 282 282 ALA ALA A . n
A 1 98 HIS 98 283 283 HIS HIS A . n
A 1 99 CYS 99 284 284 CYS CYS A . n
A 1 100 LEU 100 285 285 LEU LEU A . n
A 1 101 LYS 101 286 286 LYS LYS A . n
A 1 102 VAL 102 287 287 VAL VAL A . n
A 1 103 ALA 103 288 288 ALA ALA A . n
A 1 104 VAL 104 289 289 VAL VAL A . n
A 1 105 ASP 105 290 290 ASP ASP A . n
A 1 106 GLY 106 291 291 GLY GLY A . n
A 1 107 GLN 107 292 292 GLN GLN A . n
A 1 108 HIS 108 293 293 HIS HIS A . n
A 1 109 LEU 109 294 294 LEU LEU A . n
A 1 110 PHE 110 295 295 PHE PHE A . n
A 1 111 GLU 111 296 296 GLU GLU A . n
A 1 112 TYR 112 297 297 TYR TYR A . n
A 1 113 TYR 113 298 298 TYR TYR A . n
A 1 114 HIS 114 299 299 HIS HIS A . n
A 1 115 ARG 115 300 300 ARG ARG A . n
A 1 116 LEU 116 301 301 LEU LEU A . n
A 1 117 ARG 117 302 302 ARG ARG A . n
A 1 118 ASN 118 303 303 ASN ASN A . n
A 1 119 LEU 119 304 304 LEU LEU A . n
A 1 120 PRO 120 305 305 PRO PRO A . n
A 1 121 THR 121 306 306 THR THR A . n
A 1 122 ILE 122 307 307 ILE ILE A . n
A 1 123 ASN 123 308 308 ASN ASN A . n
A 1 124 ARG 124 309 309 ARG ARG A . n
A 1 125 LEU 125 310 310 LEU LEU A . n
A 1 126 GLU 126 311 311 GLU GLU A . n
A 1 127 VAL 127 312 312 VAL VAL A . n
A 1 128 GLY 128 313 313 GLY GLY A . n
A 1 129 GLY 129 314 314 GLY GLY A . n
A 1 130 ASP 130 315 315 ASP ASP A . n
A 1 131 ILE 131 316 316 ILE ILE A . n
A 1 132 GLN 132 317 317 GLN GLN A . n
A 1 133 LEU 133 318 318 LEU LEU A . n
A 1 134 THR 134 319 319 THR THR A . n
A 1 135 HIS 135 320 320 HIS HIS A . n
A 1 136 VAL 136 321 321 VAL VAL A . n
A 1 137 GLN 137 322 322 GLN GLN A . n
A 1 138 THR 138 323 323 THR THR A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NI 1 401 401 NI NI2 A .
D 4 HOH 1 1 1 HOH HOH A .
D 4 HOH 2 2 2 HOH HOH A .
D 4 HOH 3 3 3 HOH HOH A .
D 4 HOH 4 4 4 HOH HOH A .
D 4 HOH 5 5 5 HOH HOH A .
D 4 HOH 6 6 6 HOH HOH A .
D 4 HOH 7 7 7 HOH HOH A .
D 4 HOH 8 8 8 HOH HOH A .
D 4 HOH 9 9 9 HOH HOH A .
D 4 HOH 10 10 10 HOH HOH A .
D 4 HOH 11 11 11 HOH HOH A .
D 4 HOH 12 12 12 HOH HOH A .
D 4 HOH 13 13 13 HOH HOH A .
D 4 HOH 14 14 14 HOH HOH A .
D 4 HOH 15 15 15 HOH HOH A .
D 4 HOH 16 16 16 HOH HOH A .
D 4 HOH 17 17 17 HOH HOH A .
D 4 HOH 18 18 18 HOH HOH A .
D 4 HOH 19 19 19 HOH HOH A .
D 4 HOH 20 20 20 HOH HOH A .
D 4 HOH 21 21 21 HOH HOH A .
D 4 HOH 22 22 22 HOH HOH A .
D 4 HOH 23 23 23 HOH HOH A .
D 4 HOH 24 24 24 HOH HOH A .
D 4 HOH 25 25 25 HOH HOH A .
D 4 HOH 26 26 26 HOH HOH A .
D 4 HOH 27 27 27 HOH HOH A .
D 4 HOH 28 28 28 HOH HOH A .
D 4 HOH 29 29 29 HOH HOH A .
D 4 HOH 30 30 30 HOH HOH A .
D 4 HOH 31 31 31 HOH HOH A .
D 4 HOH 32 32 32 HOH HOH A .
D 4 HOH 33 33 33 HOH HOH A .
D 4 HOH 34 34 34 HOH HOH A .
D 4 HOH 35 35 35 HOH HOH A .
D 4 HOH 36 36 36 HOH HOH A .
D 4 HOH 37 37 37 HOH HOH A .
D 4 HOH 38 38 38 HOH HOH A .
D 4 HOH 39 39 39 HOH HOH A .
D 4 HOH 40 40 40 HOH HOH A .
D 4 HOH 41 41 41 HOH HOH A .
D 4 HOH 42 42 42 HOH HOH A .
D 4 HOH 43 43 43 HOH HOH A .
D 4 HOH 44 44 44 HOH HOH A .
D 4 HOH 45 45 45 HOH HOH A .
D 4 HOH 46 46 46 HOH HOH A .
D 4 HOH 47 47 47 HOH HOH A .
D 4 HOH 48 48 48 HOH HOH A .
D 4 HOH 49 49 49 HOH HOH A .
D 4 HOH 50 50 50 HOH HOH A .
D 4 HOH 51 51 51 HOH HOH A .
D 4 HOH 52 52 52 HOH HOH A .
D 4 HOH 53 53 53 HOH HOH A .
D 4 HOH 54 54 54 HOH HOH A .
D 4 HOH 55 55 55 HOH HOH A .
D 4 HOH 56 56 56 HOH HOH A .
D 4 HOH 57 57 57 HOH HOH A .
D 4 HOH 58 58 58 HOH HOH A .
D 4 HOH 59 59 59 HOH HOH A .
D 4 HOH 60 60 60 HOH HOH A .
D 4 HOH 61 61 61 HOH HOH A .
D 4 HOH 62 62 62 HOH HOH A .
D 4 HOH 63 63 63 HOH HOH A .
D 4 HOH 64 64 64 HOH HOH A .
D 4 HOH 65 65 65 HOH HOH A .
D 4 HOH 66 66 66 HOH HOH A .
D 4 HOH 67 67 67 HOH HOH A .
D 4 HOH 68 68 68 HOH HOH A .
D 4 HOH 69 69 69 HOH HOH A .
D 4 HOH 70 70 70 HOH HOH A .
D 4 HOH 71 71 71 HOH HOH A .
D 4 HOH 72 72 72 HOH HOH A .
D 4 HOH 73 73 73 HOH HOH A .
D 4 HOH 74 74 74 HOH HOH A .
D 4 HOH 75 75 75 HOH HOH A .
D 4 HOH 76 76 76 HOH HOH A .
D 4 HOH 77 77 77 HOH HOH A .
D 4 HOH 78 78 78 HOH HOH A .
D 4 HOH 79 79 79 HOH HOH A .
D 4 HOH 80 80 80 HOH HOH A .
D 4 HOH 81 81 81 HOH HOH A .
D 4 HOH 82 82 82 HOH HOH A .
D 4 HOH 83 83 83 HOH HOH A .
D 4 HOH 84 84 84 HOH HOH A .
D 4 HOH 85 85 85 HOH HOH A .
D 4 HOH 86 86 86 HOH HOH A .
D 4 HOH 87 87 87 HOH HOH A .
D 4 HOH 88 88 88 HOH HOH A .
D 4 HOH 89 89 89 HOH HOH A .
D 4 HOH 90 90 90 HOH HOH A .
D 4 HOH 91 91 91 HOH HOH A .
D 4 HOH 92 92 92 HOH HOH A .
D 4 HOH 93 93 93 HOH HOH A .
D 4 HOH 94 94 94 HOH HOH A .
D 4 HOH 95 95 95 HOH HOH A .
D 4 HOH 96 96 96 HOH HOH A .
D 4 HOH 97 97 97 HOH HOH A .
D 4 HOH 98 98 98 HOH HOH A .
D 4 HOH 99 99 99 HOH HOH A .
D 4 HOH 100 100 100 HOH HOH A .
D 4 HOH 101 101 101 HOH HOH A .
D 4 HOH 102 102 102 HOH HOH A .
D 4 HOH 103 103 103 HOH HOH A .
D 4 HOH 104 104 104 HOH HOH A .
D 4 HOH 105 105 105 HOH HOH A .
D 4 HOH 106 106 106 HOH HOH A .
D 4 HOH 107 107 107 HOH HOH A .
D 4 HOH 108 108 108 HOH HOH A .
D 4 HOH 109 109 109 HOH HOH A .
D 4 HOH 110 110 110 HOH HOH A .
D 4 HOH 111 111 111 HOH HOH A .
D 4 HOH 112 112 112 HOH HOH A .
D 4 HOH 113 113 113 HOH HOH A .
D 4 HOH 114 114 114 HOH HOH A .
D 4 HOH 115 115 115 HOH HOH A .
D 4 HOH 116 116 116 HOH HOH A .
D 4 HOH 117 117 117 HOH HOH A .
D 4 HOH 118 118 118 HOH HOH A .
D 4 HOH 119 119 119 HOH HOH A .
D 4 HOH 120 120 120 HOH HOH A .
D 4 HOH 121 121 121 HOH HOH A .
D 4 HOH 122 122 122 HOH HOH A .
D 4 HOH 123 123 123 HOH HOH A .
D 4 HOH 124 124 124 HOH HOH A .
D 4 HOH 125 125 125 HOH HOH A .
D 4 HOH 126 126 126 HOH HOH A .
D 4 HOH 127 127 127 HOH HOH A .
D 4 HOH 128 128 128 HOH HOH A .
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_pdbx_struct_special_symmetry.id 1
_pdbx_struct_special_symmetry.PDB_model_num 1
_pdbx_struct_special_symmetry.auth_asym_id A
_pdbx_struct_special_symmetry.auth_comp_id NI
_pdbx_struct_special_symmetry.auth_seq_id 401
_pdbx_struct_special_symmetry.PDB_ins_code ?
_pdbx_struct_special_symmetry.label_asym_id C
_pdbx_struct_special_symmetry.label_comp_id NI
_pdbx_struct_special_symmetry.label_seq_id .
#
_pdbx_struct_conn_angle.id 1
_pdbx_struct_conn_angle.ptnr1_label_atom_id O
_pdbx_struct_conn_angle.ptnr1_label_alt_id ?
_pdbx_struct_conn_angle.ptnr1_label_asym_id D
_pdbx_struct_conn_angle.ptnr1_label_comp_id HOH
_pdbx_struct_conn_angle.ptnr1_label_seq_id .
_pdbx_struct_conn_angle.ptnr1_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr1_auth_asym_id A
_pdbx_struct_conn_angle.ptnr1_auth_comp_id HOH
_pdbx_struct_conn_angle.ptnr1_auth_seq_id 12
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr1_symmetry 1_555
_pdbx_struct_conn_angle.ptnr2_label_atom_id NI
_pdbx_struct_conn_angle.ptnr2_label_alt_id ?
_pdbx_struct_conn_angle.ptnr2_label_asym_id C
_pdbx_struct_conn_angle.ptnr2_label_comp_id NI
_pdbx_struct_conn_angle.ptnr2_label_seq_id .
_pdbx_struct_conn_angle.ptnr2_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr2_auth_asym_id A
_pdbx_struct_conn_angle.ptnr2_auth_comp_id NI
_pdbx_struct_conn_angle.ptnr2_auth_seq_id 401
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr2_symmetry 1_555
_pdbx_struct_conn_angle.ptnr3_label_atom_id NE2
_pdbx_struct_conn_angle.ptnr3_label_alt_id ?
_pdbx_struct_conn_angle.ptnr3_label_asym_id A
_pdbx_struct_conn_angle.ptnr3_label_comp_id HIS
_pdbx_struct_conn_angle.ptnr3_label_seq_id 135
_pdbx_struct_conn_angle.ptnr3_auth_atom_id ?
_pdbx_struct_conn_angle.ptnr3_auth_asym_id A
_pdbx_struct_conn_angle.ptnr3_auth_comp_id HIS
_pdbx_struct_conn_angle.ptnr3_auth_seq_id 320
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code ?
_pdbx_struct_conn_angle.ptnr3_symmetry 1_555
_pdbx_struct_conn_angle.value 91.3
_pdbx_struct_conn_angle.value_esd ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2010-09-22
2 'Structure model' 1 1 2011-07-13
3 'Structure model' 2 0 2020-07-29
4 'Structure model' 2 1 2023-11-01
#
loop_
_pdbx_audit_revision_details.ordinal
_pdbx_audit_revision_details.revision_ordinal
_pdbx_audit_revision_details.data_content_type
_pdbx_audit_revision_details.provider
_pdbx_audit_revision_details.type
_pdbx_audit_revision_details.description
_pdbx_audit_revision_details.details
1 1 'Structure model' repository 'Initial release' ? ?
2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Atomic model'
3 3 'Structure model' 'Data collection'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Structure summary'
6 4 'Structure model' 'Data collection'
7 4 'Structure model' 'Database references'
8 4 'Structure model' 'Refinement description'
9 4 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' atom_site
2 3 'Structure model' chem_comp
3 3 'Structure model' entity
4 3 'Structure model' pdbx_branch_scheme
5 3 'Structure model' pdbx_chem_comp_identifier
6 3 'Structure model' pdbx_entity_branch
7 3 'Structure model' pdbx_entity_branch_descriptor
8 3 'Structure model' pdbx_entity_branch_link
9 3 'Structure model' pdbx_entity_branch_list
10 3 'Structure model' pdbx_entity_nonpoly
11 3 'Structure model' pdbx_nonpoly_scheme
12 3 'Structure model' pdbx_struct_assembly_gen
13 3 'Structure model' pdbx_struct_conn_angle
14 3 'Structure model' pdbx_struct_special_symmetry
15 3 'Structure model' struct_asym
16 3 'Structure model' struct_conn
17 3 'Structure model' struct_site
18 3 'Structure model' struct_site_gen
19 4 'Structure model' chem_comp
20 4 'Structure model' chem_comp_atom
21 4 'Structure model' chem_comp_bond
22 4 'Structure model' database_2
23 4 'Structure model' pdbx_initial_refinement_model
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 3 'Structure model' '_atom_site.B_iso_or_equiv'
2 3 'Structure model' '_atom_site.Cartn_x'
3 3 'Structure model' '_atom_site.Cartn_y'
4 3 'Structure model' '_atom_site.Cartn_z'
5 3 'Structure model' '_atom_site.auth_asym_id'
6 3 'Structure model' '_atom_site.auth_atom_id'
7 3 'Structure model' '_atom_site.auth_comp_id'
8 3 'Structure model' '_atom_site.auth_seq_id'
9 3 'Structure model' '_atom_site.label_asym_id'
10 3 'Structure model' '_atom_site.label_atom_id'
11 3 'Structure model' '_atom_site.label_comp_id'
12 3 'Structure model' '_atom_site.label_entity_id'
13 3 'Structure model' '_atom_site.occupancy'
14 3 'Structure model' '_atom_site.type_symbol'
15 3 'Structure model' '_chem_comp.name'
16 3 'Structure model' '_chem_comp.type'
17 3 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list'
18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id'
20 3 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id'
21 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
22 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id'
23 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
24 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
25 3 'Structure model' '_struct_conn.ptnr1_label_asym_id'
26 3 'Structure model' '_struct_conn.ptnr1_label_atom_id'
27 3 'Structure model' '_struct_conn.ptnr1_label_comp_id'
28 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id'
29 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
30 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
31 3 'Structure model' '_struct_conn.ptnr2_label_asym_id'
32 3 'Structure model' '_struct_conn.ptnr2_label_atom_id'
33 3 'Structure model' '_struct_conn.ptnr2_label_comp_id'
34 4 'Structure model' '_chem_comp.pdbx_synonyms'
35 4 'Structure model' '_database_2.pdbx_DOI'
36 4 'Structure model' '_database_2.pdbx_database_accession'
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
ADSC 'data collection' Quantum ? 1
MOLREP phasing . ? 2
CNS refinement 1.1 ? 3
HKL-2000 'data reduction' . ? 4
HKL-2000 'data scaling' . ? 5
#
_pdbx_entry_details.entry_id 3NV4
_pdbx_entry_details.nonpolymer_details 'THE LIGANDS SIA, GAL AND GLC FORM SIALYLLACTOSE.'
_pdbx_entry_details.sequence_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest ?
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 PRO A 189 ? ? -76.49 -154.38
2 1 SER A 206 ? ? 86.86 -6.10
3 1 ASP A 252 ? ? 65.40 -122.21
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A TYR 186 ? A TYR 1
2 1 Y 1 A PRO 187 ? A PRO 2
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
BGC C2 C N R 74
BGC C3 C N S 75
BGC C4 C N S 76
BGC C5 C N R 77
BGC C6 C N N 78
BGC C1 C N R 79
BGC O1 O N N 80
BGC O2 O N N 81
BGC O3 O N N 82
BGC O4 O N N 83
BGC O5 O N N 84
BGC O6 O N N 85
BGC H2 H N N 86
BGC H3 H N N 87
BGC H4 H N N 88
BGC H5 H N N 89
BGC H61 H N N 90
BGC H62 H N N 91
BGC H1 H N N 92
BGC HO1 H N N 93
BGC HO2 H N N 94
BGC HO3 H N N 95
BGC HO4 H N N 96
BGC HO6 H N N 97
CYS N N N N 98
CYS CA C N R 99
CYS C C N N 100
CYS O O N N 101
CYS CB C N N 102
CYS SG S N N 103
CYS OXT O N N 104
CYS H H N N 105
CYS H2 H N N 106
CYS HA H N N 107
CYS HB2 H N N 108
CYS HB3 H N N 109
CYS HG H N N 110
CYS HXT H N N 111
GAL C1 C N R 112
GAL C2 C N R 113
GAL C3 C N S 114
GAL C4 C N R 115
GAL C5 C N R 116
GAL C6 C N N 117
GAL O1 O N N 118
GAL O2 O N N 119
GAL O3 O N N 120
GAL O4 O N N 121
GAL O5 O N N 122
GAL O6 O N N 123
GAL H1 H N N 124
GAL H2 H N N 125
GAL H3 H N N 126
GAL H4 H N N 127
GAL H5 H N N 128
GAL H61 H N N 129
GAL H62 H N N 130
GAL HO1 H N N 131
GAL HO2 H N N 132
GAL HO3 H N N 133
GAL HO4 H N N 134
GAL HO6 H N N 135
GLN N N N N 136
GLN CA C N S 137
GLN C C N N 138
GLN O O N N 139
GLN CB C N N 140
GLN CG C N N 141
GLN CD C N N 142
GLN OE1 O N N 143
GLN NE2 N N N 144
GLN OXT O N N 145
GLN H H N N 146
GLN H2 H N N 147
GLN HA H N N 148
GLN HB2 H N N 149
GLN HB3 H N N 150
GLN HG2 H N N 151
GLN HG3 H N N 152
GLN HE21 H N N 153
GLN HE22 H N N 154
GLN HXT H N N 155
GLU N N N N 156
GLU CA C N S 157
GLU C C N N 158
GLU O O N N 159
GLU CB C N N 160
GLU CG C N N 161
GLU CD C N N 162
GLU OE1 O N N 163
GLU OE2 O N N 164
GLU OXT O N N 165
GLU H H N N 166
GLU H2 H N N 167
GLU HA H N N 168
GLU HB2 H N N 169
GLU HB3 H N N 170
GLU HG2 H N N 171
GLU HG3 H N N 172
GLU HE2 H N N 173
GLU HXT H N N 174
GLY N N N N 175
GLY CA C N N 176
GLY C C N N 177
GLY O O N N 178
GLY OXT O N N 179
GLY H H N N 180
GLY H2 H N N 181
GLY HA2 H N N 182
GLY HA3 H N N 183
GLY HXT H N N 184
HIS N N N N 185
HIS CA C N S 186
HIS C C N N 187
HIS O O N N 188
HIS CB C N N 189
HIS CG C Y N 190
HIS ND1 N Y N 191
HIS CD2 C Y N 192
HIS CE1 C Y N 193
HIS NE2 N Y N 194
HIS OXT O N N 195
HIS H H N N 196
HIS H2 H N N 197
HIS HA H N N 198
HIS HB2 H N N 199
HIS HB3 H N N 200
HIS HD1 H N N 201
HIS HD2 H N N 202
HIS HE1 H N N 203
HIS HE2 H N N 204
HIS HXT H N N 205
HOH O O N N 206
HOH H1 H N N 207
HOH H2 H N N 208
ILE N N N N 209
ILE CA C N S 210
ILE C C N N 211
ILE O O N N 212
ILE CB C N S 213
ILE CG1 C N N 214
ILE CG2 C N N 215
ILE CD1 C N N 216
ILE OXT O N N 217
ILE H H N N 218
ILE H2 H N N 219
ILE HA H N N 220
ILE HB H N N 221
ILE HG12 H N N 222
ILE HG13 H N N 223
ILE HG21 H N N 224
ILE HG22 H N N 225
ILE HG23 H N N 226
ILE HD11 H N N 227
ILE HD12 H N N 228
ILE HD13 H N N 229
ILE HXT H N N 230
LEU N N N N 231
LEU CA C N S 232
LEU C C N N 233
LEU O O N N 234
LEU CB C N N 235
LEU CG C N N 236
LEU CD1 C N N 237
LEU CD2 C N N 238
LEU OXT O N N 239
LEU H H N N 240
LEU H2 H N N 241
LEU HA H N N 242
LEU HB2 H N N 243
LEU HB3 H N N 244
LEU HG H N N 245
LEU HD11 H N N 246
LEU HD12 H N N 247
LEU HD13 H N N 248
LEU HD21 H N N 249
LEU HD22 H N N 250
LEU HD23 H N N 251
LEU HXT H N N 252
LYS N N N N 253
LYS CA C N S 254
LYS C C N N 255
LYS O O N N 256
LYS CB C N N 257
LYS CG C N N 258
LYS CD C N N 259
LYS CE C N N 260
LYS NZ N N N 261
LYS OXT O N N 262
LYS H H N N 263
LYS H2 H N N 264
LYS HA H N N 265
LYS HB2 H N N 266
LYS HB3 H N N 267
LYS HG2 H N N 268
LYS HG3 H N N 269
LYS HD2 H N N 270
LYS HD3 H N N 271
LYS HE2 H N N 272
LYS HE3 H N N 273
LYS HZ1 H N N 274
LYS HZ2 H N N 275
LYS HZ3 H N N 276
LYS HXT H N N 277
MET N N N N 278
MET CA C N S 279
MET C C N N 280
MET O O N N 281
MET CB C N N 282
MET CG C N N 283
MET SD S N N 284
MET CE C N N 285
MET OXT O N N 286
MET H H N N 287
MET H2 H N N 288
MET HA H N N 289
MET HB2 H N N 290
MET HB3 H N N 291
MET HG2 H N N 292
MET HG3 H N N 293
MET HE1 H N N 294
MET HE2 H N N 295
MET HE3 H N N 296
MET HXT H N N 297
NI NI NI N N 298
PHE N N N N 299
PHE CA C N S 300
PHE C C N N 301
PHE O O N N 302
PHE CB C N N 303
PHE CG C Y N 304
PHE CD1 C Y N 305
PHE CD2 C Y N 306
PHE CE1 C Y N 307
PHE CE2 C Y N 308
PHE CZ C Y N 309
PHE OXT O N N 310
PHE H H N N 311
PHE H2 H N N 312
PHE HA H N N 313
PHE HB2 H N N 314
PHE HB3 H N N 315
PHE HD1 H N N 316
PHE HD2 H N N 317
PHE HE1 H N N 318
PHE HE2 H N N 319
PHE HZ H N N 320
PHE HXT H N N 321
PRO N N N N 322
PRO CA C N S 323
PRO C C N N 324
PRO O O N N 325
PRO CB C N N 326
PRO CG C N N 327
PRO CD C N N 328
PRO OXT O N N 329
PRO H H N N 330
PRO HA H N N 331
PRO HB2 H N N 332
PRO HB3 H N N 333
PRO HG2 H N N 334
PRO HG3 H N N 335
PRO HD2 H N N 336
PRO HD3 H N N 337
PRO HXT H N N 338
SER N N N N 339
SER CA C N S 340
SER C C N N 341
SER O O N N 342
SER CB C N N 343
SER OG O N N 344
SER OXT O N N 345
SER H H N N 346
SER H2 H N N 347
SER HA H N N 348
SER HB2 H N N 349
SER HB3 H N N 350
SER HG H N N 351
SER HXT H N N 352
SIA C1 C N N 353
SIA C2 C N R 354
SIA C3 C N N 355
SIA C4 C N S 356
SIA C5 C N R 357
SIA C6 C N R 358
SIA C7 C N R 359
SIA C8 C N R 360
SIA C9 C N N 361
SIA C10 C N N 362
SIA C11 C N N 363
SIA N5 N N N 364
SIA O1A O N N 365
SIA O1B O N N 366
SIA O2 O N N 367
SIA O4 O N N 368
SIA O6 O N N 369
SIA O7 O N N 370
SIA O8 O N N 371
SIA O9 O N N 372
SIA O10 O N N 373
SIA H32 H N N 374
SIA H31 H N N 375
SIA H4 H N N 376
SIA H5 H N N 377
SIA H6 H N N 378
SIA H7 H N N 379
SIA H8 H N N 380
SIA H92 H N N 381
SIA H91 H N N 382
SIA H111 H N N 383
SIA H113 H N N 384
SIA H112 H N N 385
SIA HN5 H N N 386
SIA HO1B H N N 387
SIA HO2 H N N 388
SIA HO4 H N N 389
SIA HO7 H N N 390
SIA HO8 H N N 391
SIA HO9 H N N 392
THR N N N N 393
THR CA C N S 394
THR C C N N 395
THR O O N N 396
THR CB C N R 397
THR OG1 O N N 398
THR CG2 C N N 399
THR OXT O N N 400
THR H H N N 401
THR H2 H N N 402
THR HA H N N 403
THR HB H N N 404
THR HG1 H N N 405
THR HG21 H N N 406
THR HG22 H N N 407
THR HG23 H N N 408
THR HXT H N N 409
TRP N N N N 410
TRP CA C N S 411
TRP C C N N 412
TRP O O N N 413
TRP CB C N N 414
TRP CG C Y N 415
TRP CD1 C Y N 416
TRP CD2 C Y N 417
TRP NE1 N Y N 418
TRP CE2 C Y N 419
TRP CE3 C Y N 420
TRP CZ2 C Y N 421
TRP CZ3 C Y N 422
TRP CH2 C Y N 423
TRP OXT O N N 424
TRP H H N N 425
TRP H2 H N N 426
TRP HA H N N 427
TRP HB2 H N N 428
TRP HB3 H N N 429
TRP HD1 H N N 430
TRP HE1 H N N 431
TRP HE3 H N N 432
TRP HZ2 H N N 433
TRP HZ3 H N N 434
TRP HH2 H N N 435
TRP HXT H N N 436
TYR N N N N 437
TYR CA C N S 438
TYR C C N N 439
TYR O O N N 440
TYR CB C N N 441
TYR CG C Y N 442
TYR CD1 C Y N 443
TYR CD2 C Y N 444
TYR CE1 C Y N 445
TYR CE2 C Y N 446
TYR CZ C Y N 447
TYR OH O N N 448
TYR OXT O N N 449
TYR H H N N 450
TYR H2 H N N 451
TYR HA H N N 452
TYR HB2 H N N 453
TYR HB3 H N N 454
TYR HD1 H N N 455
TYR HD2 H N N 456
TYR HE1 H N N 457
TYR HE2 H N N 458
TYR HH H N N 459
TYR HXT H N N 460
VAL N N N N 461
VAL CA C N S 462
VAL C C N N 463
VAL O O N N 464
VAL CB C N N 465
VAL CG1 C N N 466
VAL CG2 C N N 467
VAL OXT O N N 468
VAL H H N N 469
VAL H2 H N N 470
VAL HA H N N 471
VAL HB H N N 472
VAL HG11 H N N 473
VAL HG12 H N N 474
VAL HG13 H N N 475
VAL HG21 H N N 476
VAL HG22 H N N 477
VAL HG23 H N N 478
VAL HXT H N N 479
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
BGC C2 C3 sing N N 70
BGC C2 C1 sing N N 71
BGC C2 O2 sing N N 72
BGC C2 H2 sing N N 73
BGC C3 C4 sing N N 74
BGC C3 O3 sing N N 75
BGC C3 H3 sing N N 76
BGC C4 C5 sing N N 77
BGC C4 O4 sing N N 78
BGC C4 H4 sing N N 79
BGC C5 C6 sing N N 80
BGC C5 O5 sing N N 81
BGC C5 H5 sing N N 82
BGC C6 O6 sing N N 83
BGC C6 H61 sing N N 84
BGC C6 H62 sing N N 85
BGC C1 O1 sing N N 86
BGC C1 O5 sing N N 87
BGC C1 H1 sing N N 88
BGC O1 HO1 sing N N 89
BGC O2 HO2 sing N N 90
BGC O3 HO3 sing N N 91
BGC O4 HO4 sing N N 92
BGC O6 HO6 sing N N 93
CYS N CA sing N N 94
CYS N H sing N N 95
CYS N H2 sing N N 96
CYS CA C sing N N 97
CYS CA CB sing N N 98
CYS CA HA sing N N 99
CYS C O doub N N 100
CYS C OXT sing N N 101
CYS CB SG sing N N 102
CYS CB HB2 sing N N 103
CYS CB HB3 sing N N 104
CYS SG HG sing N N 105
CYS OXT HXT sing N N 106
GAL C1 C2 sing N N 107
GAL C1 O1 sing N N 108
GAL C1 O5 sing N N 109
GAL C1 H1 sing N N 110
GAL C2 C3 sing N N 111
GAL C2 O2 sing N N 112
GAL C2 H2 sing N N 113
GAL C3 C4 sing N N 114
GAL C3 O3 sing N N 115
GAL C3 H3 sing N N 116
GAL C4 C5 sing N N 117
GAL C4 O4 sing N N 118
GAL C4 H4 sing N N 119
GAL C5 C6 sing N N 120
GAL C5 O5 sing N N 121
GAL C5 H5 sing N N 122
GAL C6 O6 sing N N 123
GAL C6 H61 sing N N 124
GAL C6 H62 sing N N 125
GAL O1 HO1 sing N N 126
GAL O2 HO2 sing N N 127
GAL O3 HO3 sing N N 128
GAL O4 HO4 sing N N 129
GAL O6 HO6 sing N N 130
GLN N CA sing N N 131
GLN N H sing N N 132
GLN N H2 sing N N 133
GLN CA C sing N N 134
GLN CA CB sing N N 135
GLN CA HA sing N N 136
GLN C O doub N N 137
GLN C OXT sing N N 138
GLN CB CG sing N N 139
GLN CB HB2 sing N N 140
GLN CB HB3 sing N N 141
GLN CG CD sing N N 142
GLN CG HG2 sing N N 143
GLN CG HG3 sing N N 144
GLN CD OE1 doub N N 145
GLN CD NE2 sing N N 146
GLN NE2 HE21 sing N N 147
GLN NE2 HE22 sing N N 148
GLN OXT HXT sing N N 149
GLU N CA sing N N 150
GLU N H sing N N 151
GLU N H2 sing N N 152
GLU CA C sing N N 153
GLU CA CB sing N N 154
GLU CA HA sing N N 155
GLU C O doub N N 156
GLU C OXT sing N N 157
GLU CB CG sing N N 158
GLU CB HB2 sing N N 159
GLU CB HB3 sing N N 160
GLU CG CD sing N N 161
GLU CG HG2 sing N N 162
GLU CG HG3 sing N N 163
GLU CD OE1 doub N N 164
GLU CD OE2 sing N N 165
GLU OE2 HE2 sing N N 166
GLU OXT HXT sing N N 167
GLY N CA sing N N 168
GLY N H sing N N 169
GLY N H2 sing N N 170
GLY CA C sing N N 171
GLY CA HA2 sing N N 172
GLY CA HA3 sing N N 173
GLY C O doub N N 174
GLY C OXT sing N N 175
GLY OXT HXT sing N N 176
HIS N CA sing N N 177
HIS N H sing N N 178
HIS N H2 sing N N 179
HIS CA C sing N N 180
HIS CA CB sing N N 181
HIS CA HA sing N N 182
HIS C O doub N N 183
HIS C OXT sing N N 184
HIS CB CG sing N N 185
HIS CB HB2 sing N N 186
HIS CB HB3 sing N N 187
HIS CG ND1 sing Y N 188
HIS CG CD2 doub Y N 189
HIS ND1 CE1 doub Y N 190
HIS ND1 HD1 sing N N 191
HIS CD2 NE2 sing Y N 192
HIS CD2 HD2 sing N N 193
HIS CE1 NE2 sing Y N 194
HIS CE1 HE1 sing N N 195
HIS NE2 HE2 sing N N 196
HIS OXT HXT sing N N 197
HOH O H1 sing N N 198
HOH O H2 sing N N 199
ILE N CA sing N N 200
ILE N H sing N N 201
ILE N H2 sing N N 202
ILE CA C sing N N 203
ILE CA CB sing N N 204
ILE CA HA sing N N 205
ILE C O doub N N 206
ILE C OXT sing N N 207
ILE CB CG1 sing N N 208
ILE CB CG2 sing N N 209
ILE CB HB sing N N 210
ILE CG1 CD1 sing N N 211
ILE CG1 HG12 sing N N 212
ILE CG1 HG13 sing N N 213
ILE CG2 HG21 sing N N 214
ILE CG2 HG22 sing N N 215
ILE CG2 HG23 sing N N 216
ILE CD1 HD11 sing N N 217
ILE CD1 HD12 sing N N 218
ILE CD1 HD13 sing N N 219
ILE OXT HXT sing N N 220
LEU N CA sing N N 221
LEU N H sing N N 222
LEU N H2 sing N N 223
LEU CA C sing N N 224
LEU CA CB sing N N 225
LEU CA HA sing N N 226
LEU C O doub N N 227
LEU C OXT sing N N 228
LEU CB CG sing N N 229
LEU CB HB2 sing N N 230
LEU CB HB3 sing N N 231
LEU CG CD1 sing N N 232
LEU CG CD2 sing N N 233
LEU CG HG sing N N 234
LEU CD1 HD11 sing N N 235
LEU CD1 HD12 sing N N 236
LEU CD1 HD13 sing N N 237
LEU CD2 HD21 sing N N 238
LEU CD2 HD22 sing N N 239
LEU CD2 HD23 sing N N 240
LEU OXT HXT sing N N 241
LYS N CA sing N N 242
LYS N H sing N N 243
LYS N H2 sing N N 244
LYS CA C sing N N 245
LYS CA CB sing N N 246
LYS CA HA sing N N 247
LYS C O doub N N 248
LYS C OXT sing N N 249
LYS CB CG sing N N 250
LYS CB HB2 sing N N 251
LYS CB HB3 sing N N 252
LYS CG CD sing N N 253
LYS CG HG2 sing N N 254
LYS CG HG3 sing N N 255
LYS CD CE sing N N 256
LYS CD HD2 sing N N 257
LYS CD HD3 sing N N 258
LYS CE NZ sing N N 259
LYS CE HE2 sing N N 260
LYS CE HE3 sing N N 261
LYS NZ HZ1 sing N N 262
LYS NZ HZ2 sing N N 263
LYS NZ HZ3 sing N N 264
LYS OXT HXT sing N N 265
MET N CA sing N N 266
MET N H sing N N 267
MET N H2 sing N N 268
MET CA C sing N N 269
MET CA CB sing N N 270
MET CA HA sing N N 271
MET C O doub N N 272
MET C OXT sing N N 273
MET CB CG sing N N 274
MET CB HB2 sing N N 275
MET CB HB3 sing N N 276
MET CG SD sing N N 277
MET CG HG2 sing N N 278
MET CG HG3 sing N N 279
MET SD CE sing N N 280
MET CE HE1 sing N N 281
MET CE HE2 sing N N 282
MET CE HE3 sing N N 283
MET OXT HXT sing N N 284
PHE N CA sing N N 285
PHE N H sing N N 286
PHE N H2 sing N N 287
PHE CA C sing N N 288
PHE CA CB sing N N 289
PHE CA HA sing N N 290
PHE C O doub N N 291
PHE C OXT sing N N 292
PHE CB CG sing N N 293
PHE CB HB2 sing N N 294
PHE CB HB3 sing N N 295
PHE CG CD1 doub Y N 296
PHE CG CD2 sing Y N 297
PHE CD1 CE1 sing Y N 298
PHE CD1 HD1 sing N N 299
PHE CD2 CE2 doub Y N 300
PHE CD2 HD2 sing N N 301
PHE CE1 CZ doub Y N 302
PHE CE1 HE1 sing N N 303
PHE CE2 CZ sing Y N 304
PHE CE2 HE2 sing N N 305
PHE CZ HZ sing N N 306
PHE OXT HXT sing N N 307
PRO N CA sing N N 308
PRO N CD sing N N 309
PRO N H sing N N 310
PRO CA C sing N N 311
PRO CA CB sing N N 312
PRO CA HA sing N N 313
PRO C O doub N N 314
PRO C OXT sing N N 315
PRO CB CG sing N N 316
PRO CB HB2 sing N N 317
PRO CB HB3 sing N N 318
PRO CG CD sing N N 319
PRO CG HG2 sing N N 320
PRO CG HG3 sing N N 321
PRO CD HD2 sing N N 322
PRO CD HD3 sing N N 323
PRO OXT HXT sing N N 324
SER N CA sing N N 325
SER N H sing N N 326
SER N H2 sing N N 327
SER CA C sing N N 328
SER CA CB sing N N 329
SER CA HA sing N N 330
SER C O doub N N 331
SER C OXT sing N N 332
SER CB OG sing N N 333
SER CB HB2 sing N N 334
SER CB HB3 sing N N 335
SER OG HG sing N N 336
SER OXT HXT sing N N 337
SIA C1 C2 sing N N 338
SIA C1 O1A doub N N 339
SIA C1 O1B sing N N 340
SIA C2 C3 sing N N 341
SIA C2 O2 sing N N 342
SIA C2 O6 sing N N 343
SIA C3 C4 sing N N 344
SIA C3 H32 sing N N 345
SIA C3 H31 sing N N 346
SIA C4 C5 sing N N 347
SIA C4 O4 sing N N 348
SIA C4 H4 sing N N 349
SIA C5 C6 sing N N 350
SIA C5 N5 sing N N 351
SIA C5 H5 sing N N 352
SIA C6 C7 sing N N 353
SIA C6 O6 sing N N 354
SIA C6 H6 sing N N 355
SIA C7 C8 sing N N 356
SIA C7 O7 sing N N 357
SIA C7 H7 sing N N 358
SIA C8 C9 sing N N 359
SIA C8 O8 sing N N 360
SIA C8 H8 sing N N 361
SIA C9 O9 sing N N 362
SIA C9 H92 sing N N 363
SIA C9 H91 sing N N 364
SIA C10 C11 sing N N 365
SIA C10 N5 sing N N 366
SIA C10 O10 doub N N 367
SIA C11 H111 sing N N 368
SIA C11 H113 sing N N 369
SIA C11 H112 sing N N 370
SIA N5 HN5 sing N N 371
SIA O1B HO1B sing N N 372
SIA O2 HO2 sing N N 373
SIA O4 HO4 sing N N 374
SIA O7 HO7 sing N N 375
SIA O8 HO8 sing N N 376
SIA O9 HO9 sing N N 377
THR N CA sing N N 378
THR N H sing N N 379
THR N H2 sing N N 380
THR CA C sing N N 381
THR CA CB sing N N 382
THR CA HA sing N N 383
THR C O doub N N 384
THR C OXT sing N N 385
THR CB OG1 sing N N 386
THR CB CG2 sing N N 387
THR CB HB sing N N 388
THR OG1 HG1 sing N N 389
THR CG2 HG21 sing N N 390
THR CG2 HG22 sing N N 391
THR CG2 HG23 sing N N 392
THR OXT HXT sing N N 393
TRP N CA sing N N 394
TRP N H sing N N 395
TRP N H2 sing N N 396
TRP CA C sing N N 397
TRP CA CB sing N N 398
TRP CA HA sing N N 399
TRP C O doub N N 400
TRP C OXT sing N N 401
TRP CB CG sing N N 402
TRP CB HB2 sing N N 403
TRP CB HB3 sing N N 404
TRP CG CD1 doub Y N 405
TRP CG CD2 sing Y N 406
TRP CD1 NE1 sing Y N 407
TRP CD1 HD1 sing N N 408
TRP CD2 CE2 doub Y N 409
TRP CD2 CE3 sing Y N 410
TRP NE1 CE2 sing Y N 411
TRP NE1 HE1 sing N N 412
TRP CE2 CZ2 sing Y N 413
TRP CE3 CZ3 doub Y N 414
TRP CE3 HE3 sing N N 415
TRP CZ2 CH2 doub Y N 416
TRP CZ2 HZ2 sing N N 417
TRP CZ3 CH2 sing Y N 418
TRP CZ3 HZ3 sing N N 419
TRP CH2 HH2 sing N N 420
TRP OXT HXT sing N N 421
TYR N CA sing N N 422
TYR N H sing N N 423
TYR N H2 sing N N 424
TYR CA C sing N N 425
TYR CA CB sing N N 426
TYR CA HA sing N N 427
TYR C O doub N N 428
TYR C OXT sing N N 429
TYR CB CG sing N N 430
TYR CB HB2 sing N N 431
TYR CB HB3 sing N N 432
TYR CG CD1 doub Y N 433
TYR CG CD2 sing Y N 434
TYR CD1 CE1 sing Y N 435
TYR CD1 HD1 sing N N 436
TYR CD2 CE2 doub Y N 437
TYR CD2 HD2 sing N N 438
TYR CE1 CZ doub Y N 439
TYR CE1 HE1 sing N N 440
TYR CE2 CZ sing Y N 441
TYR CE2 HE2 sing N N 442
TYR CZ OH sing N N 443
TYR OH HH sing N N 444
TYR OXT HXT sing N N 445
VAL N CA sing N N 446
VAL N H sing N N 447
VAL N H2 sing N N 448
VAL CA C sing N N 449
VAL CA CB sing N N 450
VAL CA HA sing N N 451
VAL C O doub N N 452
VAL C OXT sing N N 453
VAL CB CG1 sing N N 454
VAL CB CG2 sing N N 455
VAL CB HB sing N N 456
VAL CG1 HG11 sing N N 457
VAL CG1 HG12 sing N N 458
VAL CG1 HG13 sing N N 459
VAL CG2 HG21 sing N N 460
VAL CG2 HG22 sing N N 461
VAL CG2 HG23 sing N N 462
VAL OXT HXT sing N N 463
#
loop_
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_mon_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.hetero
B 2 BGC 1 B BGC 1 L GLC 502 n
B 2 GAL 2 B GAL 2 L GAL 501 n
B 2 SIA 3 B SIA 3 L SIA 500 n
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BGC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpb
BGC 'COMMON NAME' GMML 1.0 b-D-glucopyranose
BGC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Glcp
BGC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc
GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb
GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose
GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp
GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal
SIA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DNeup5Aca
SIA 'COMMON NAME' GMML 1.0 'N-acetyl-a-D-neuraminic acid'
SIA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Neup5Ac
SIA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Neu5Ac
#
_pdbx_entity_branch.entity_id 2
_pdbx_entity_branch.type oligosaccharide
#
loop_
_pdbx_entity_branch_descriptor.ordinal
_pdbx_entity_branch_descriptor.entity_id
_pdbx_entity_branch_descriptor.descriptor
_pdbx_entity_branch_descriptor.type
_pdbx_entity_branch_descriptor.program
_pdbx_entity_branch_descriptor.program_version
1 2 DNeup5Aca2-3DGalpb1-4DGlcpb1-ROH 'Glycam Condensed Sequence'
GMML 1.0
2 2 'WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a4-b1_b3-c2' WURCS
PDB2Glycan 1.1.0
3 2 '[][b-D-Glcp]{[(4+1)][b-D-Galp]{[(3+2)][a-D-Neup5Ac]{}}}' LINUCS
PDB-CARE ?
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.value_order
_pdbx_entity_branch_link.details
1 2 2 GAL C1 O1 1 BGC O4 HO4 sing ?
2 2 3 SIA C2 O2 2 GAL O3 HO3 sing ?
#
loop_
_pdbx_entity_branch_list.entity_id
_pdbx_entity_branch_list.comp_id
_pdbx_entity_branch_list.num
_pdbx_entity_branch_list.hetero
2 BGC 1 n
2 GAL 2 n
2 SIA 3 n
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
3 'NICKEL (II) ION' NI
4 water HOH
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3KOE
_pdbx_initial_refinement_model.details 'PDB entry 3KOE'
#