HEADER HYDROLASE 09-JUL-10 3NWO TITLE CRYSTAL STRUCTURE OF PROLINE IMINOPEPTIDASE MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE IMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PIP; COMPND 5 EC: 3.4.11.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_2681; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, PROLINE IMINOPEPTIDASE, MYCOBACTERIUM KEYWDS 3 SMEGMATIS, MYCOBACTERIUM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 21-FEB-24 3NWO 1 REMARK SEQADV LINK REVDAT 3 11-OCT-17 3NWO 1 REMARK REVDAT 2 22-APR-15 3NWO 1 JRNL VERSN REVDAT 1 04-AUG-10 3NWO 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 21658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1104 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1478 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1990 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2443 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1598 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3353 ; 1.412 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3886 ; 0.957 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 5.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;28.803 ;23.417 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 345 ;12.861 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;20.089 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2789 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 503 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1518 ; 0.668 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 601 ; 0.208 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2463 ; 1.112 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 925 ; 1.904 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 883 ; 2.930 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 8 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 13.9510 51.2930 29.5690 REMARK 3 T TENSOR REMARK 3 T11: 0.0451 T22: 0.0059 REMARK 3 T33: 0.0193 T12: -0.0006 REMARK 3 T13: -0.0131 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.0983 L22: 2.8788 REMARK 3 L33: 1.2874 L12: 1.4229 REMARK 3 L13: 0.5960 L23: 1.7701 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: -0.0478 S13: -0.0518 REMARK 3 S21: 0.1729 S22: -0.1038 S23: -0.0232 REMARK 3 S31: 0.1099 S32: -0.0744 S33: 0.0265 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 145 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8960 54.5640 17.8720 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: 0.0268 REMARK 3 T33: 0.0227 T12: -0.0024 REMARK 3 T13: 0.0032 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0217 L22: 0.1658 REMARK 3 L33: 0.0689 L12: 0.0185 REMARK 3 L13: -0.0128 L23: 0.0385 REMARK 3 S TENSOR REMARK 3 S11: 0.0231 S12: 0.0072 S13: 0.0023 REMARK 3 S21: 0.0282 S22: -0.0081 S23: 0.0017 REMARK 3 S31: 0.0030 S32: -0.0220 S33: -0.0149 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6160 55.3670 -5.1960 REMARK 3 T TENSOR REMARK 3 T11: 0.0417 T22: 0.0148 REMARK 3 T33: 0.0299 T12: 0.0010 REMARK 3 T13: 0.0217 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.3396 L22: 0.3376 REMARK 3 L33: 0.3692 L12: -0.2938 REMARK 3 L13: 0.1010 L23: -0.2294 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: -0.0175 S13: -0.0150 REMARK 3 S21: -0.0386 S22: 0.0107 S23: -0.0022 REMARK 3 S31: -0.0051 S32: -0.0178 S33: -0.0217 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 228 REMARK 3 ORIGIN FOR THE GROUP (A): 18.2610 45.9410 5.4100 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0329 REMARK 3 T33: 0.0236 T12: 0.0092 REMARK 3 T13: 0.0266 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.0326 L22: 0.3780 REMARK 3 L33: 0.5053 L12: 0.3710 REMARK 3 L13: 1.0820 L23: -0.0665 REMARK 3 S TENSOR REMARK 3 S11: -0.0624 S12: 0.1632 S13: 0.0638 REMARK 3 S21: -0.0862 S22: 0.0070 S23: -0.0467 REMARK 3 S31: 0.0269 S32: 0.0672 S33: 0.0555 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 229 A 306 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7030 67.0840 12.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.0255 T22: 0.0059 REMARK 3 T33: 0.0174 T12: 0.0067 REMARK 3 T13: 0.0113 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.4398 L22: 0.1988 REMARK 3 L33: 0.5991 L12: -0.1061 REMARK 3 L13: -0.0448 L23: 0.1250 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: 0.0032 S13: 0.0400 REMARK 3 S21: -0.0224 S22: -0.0196 S23: -0.0127 REMARK 3 S31: -0.0435 S32: -0.0167 S33: -0.0148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3NWO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060372. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24228 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 55.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.52700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M SODIUM CITRATE, REMARK 280 0.1 M TRIS PROPANE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 35.96500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 35.96500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 ASN A -6 REMARK 465 THR A -5 REMARK 465 ASN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 MET A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 465 ALA A 307 REMARK 465 ARG A 308 REMARK 465 VAL A 309 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 271 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 46 173.33 70.00 REMARK 500 SER A 113 -118.41 64.62 REMARK 500 SER A 279 -126.07 -136.40 REMARK 500 CYS A 281 58.90 -98.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 310 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 500 O REMARK 620 2 HOH A 511 O 85.4 REMARK 620 3 HOH A 515 O 177.2 93.2 REMARK 620 4 HOH A 520 O 92.6 83.8 89.7 REMARK 620 5 HOH A 547 O 86.8 172.1 94.7 96.0 REMARK 620 6 HOH A 583 O 90.8 89.4 86.8 172.1 91.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 313 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYSMA.00560.A RELATED DB: TARGETDB DBREF 3NWO A 1 309 UNP A0QVS8 A0QVS8_MYCS2 1 309 SEQADV 3NWO MET A -20 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO ALA A -19 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO HIS A -18 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO HIS A -17 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO HIS A -16 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO HIS A -15 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO HIS A -14 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO HIS A -13 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO MET A -12 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO GLY A -11 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO THR A -10 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO LEU A -9 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO GLU A -8 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO ALA A -7 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO ASN A -6 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO THR A -5 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO ASN A -4 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO GLY A -3 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO PRO A -2 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO GLY A -1 UNP A0QVS8 EXPRESSION TAG SEQADV 3NWO SER A 0 UNP A0QVS8 EXPRESSION TAG SEQRES 1 A 330 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 330 ALA ASN THR ASN GLY PRO GLY SER MET LEU SER ARG MET SEQRES 3 A 330 PRO VAL SER SER ARG THR VAL PRO PHE GLY ASP HIS GLU SEQRES 4 A 330 THR TRP VAL GLN VAL THR THR PRO GLU ASN ALA GLN PRO SEQRES 5 A 330 HIS ALA LEU PRO LEU ILE VAL LEU HIS GLY GLY PRO GLY SEQRES 6 A 330 MET ALA HIS ASN TYR VAL ALA ASN ILE ALA ALA LEU ALA SEQRES 7 A 330 ASP GLU THR GLY ARG THR VAL ILE HIS TYR ASP GLN VAL SEQRES 8 A 330 GLY CYS GLY ASN SER THR HIS LEU PRO ASP ALA PRO ALA SEQRES 9 A 330 ASP PHE TRP THR PRO GLN LEU PHE VAL ASP GLU PHE HIS SEQRES 10 A 330 ALA VAL CYS THR ALA LEU GLY ILE GLU ARG TYR HIS VAL SEQRES 11 A 330 LEU GLY GLN SER TRP GLY GLY MET LEU GLY ALA GLU ILE SEQRES 12 A 330 ALA VAL ARG GLN PRO SER GLY LEU VAL SER LEU ALA ILE SEQRES 13 A 330 CYS ASN SER PRO ALA SER MET ARG LEU TRP SER GLU ALA SEQRES 14 A 330 ALA GLY ASP LEU ARG ALA GLN LEU PRO ALA GLU THR ARG SEQRES 15 A 330 ALA ALA LEU ASP ARG HIS GLU ALA ALA GLY THR ILE THR SEQRES 16 A 330 HIS PRO ASP TYR LEU GLN ALA ALA ALA GLU PHE TYR ARG SEQRES 17 A 330 ARG HIS VAL CYS ARG VAL VAL PRO THR PRO GLN ASP PHE SEQRES 18 A 330 ALA ASP SER VAL ALA GLN MET GLU ALA GLU PRO THR VAL SEQRES 19 A 330 TYR HIS THR MET ASN GLY PRO ASN GLU PHE HIS VAL VAL SEQRES 20 A 330 GLY THR LEU GLY ASP TRP SER VAL ILE ASP ARG LEU PRO SEQRES 21 A 330 ASP VAL THR ALA PRO VAL LEU VAL ILE ALA GLY GLU HIS SEQRES 22 A 330 ASP GLU ALA THR PRO LYS THR TRP GLN PRO PHE VAL ASP SEQRES 23 A 330 HIS ILE PRO ASP VAL ARG SER HIS VAL PHE PRO GLY THR SEQRES 24 A 330 SER HIS CYS THR HIS LEU GLU LYS PRO GLU GLU PHE ARG SEQRES 25 A 330 ALA VAL VAL ALA GLN PHE LEU HIS GLN HIS ASP LEU ALA SEQRES 26 A 330 ALA ASP ALA ARG VAL HET MG A 310 1 HET GOL A 311 6 HET EDO A 312 4 HET GOL A 313 6 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MG MG 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *333(H2 O) HELIX 1 1 HIS A 47 ALA A 54 5 8 HELIX 2 2 ALA A 55 GLY A 61 1 7 HELIX 3 3 PRO A 82 TRP A 86 5 5 HELIX 4 4 THR A 87 GLY A 103 1 17 HELIX 5 5 SER A 113 ARG A 125 1 13 HELIX 6 6 SER A 141 LEU A 156 1 16 HELIX 7 7 PRO A 157 GLY A 171 1 15 HELIX 8 8 HIS A 175 VAL A 190 1 16 HELIX 9 9 PRO A 197 GLU A 210 1 14 HELIX 10 10 PRO A 211 ASN A 218 1 8 HELIX 11 11 GLY A 227 TRP A 232 5 6 HELIX 12 12 VAL A 234 VAL A 241 5 8 HELIX 13 13 THR A 256 ILE A 267 1 12 HELIX 14 14 CYS A 281 LYS A 286 1 6 HELIX 15 15 LYS A 286 ASP A 306 1 21 SHEET 1 A 8 SER A 9 PHE A 14 0 SHEET 2 A 8 HIS A 17 THR A 24 -1 O VAL A 21 N ARG A 10 SHEET 3 A 8 VAL A 64 TYR A 67 -1 O HIS A 66 N GLN A 22 SHEET 4 A 8 LEU A 36 LEU A 39 1 N LEU A 36 O ILE A 65 SHEET 5 A 8 TYR A 107 GLN A 112 1 O LEU A 110 N LEU A 39 SHEET 6 A 8 LEU A 130 CYS A 136 1 O VAL A 131 N TYR A 107 SHEET 7 A 8 VAL A 245 GLY A 250 1 O ILE A 248 N ILE A 135 SHEET 8 A 8 VAL A 270 PHE A 275 1 O ARG A 271 N VAL A 247 LINK MG MG A 310 O HOH A 500 1555 1555 2.20 LINK MG MG A 310 O HOH A 511 1555 1555 2.10 LINK MG MG A 310 O HOH A 515 1555 1555 2.21 LINK MG MG A 310 O HOH A 520 1555 1555 2.05 LINK MG MG A 310 O HOH A 547 1555 1555 2.04 LINK MG MG A 310 O HOH A 583 1555 1555 2.16 CISPEP 1 GLY A 42 PRO A 43 0 -9.94 CISPEP 2 VAL A 194 PRO A 195 0 1.60 SITE 1 AC1 6 HOH A 500 HOH A 511 HOH A 515 HOH A 520 SITE 2 AC1 6 HOH A 547 HOH A 583 SITE 1 AC2 7 GLY A 42 PRO A 43 SER A 113 TRP A 114 SITE 2 AC2 7 ASN A 218 LEU A 229 HOH A 602 SITE 1 AC3 4 MET A 45 TYR A 49 HIS A 280 HOH A 569 SITE 1 AC4 8 ASN A 28 GLN A 30 GLU A 59 THR A 76 SITE 2 AC4 8 HOH A 410 HOH A 419 HOH A 512 HOH A 531 CRYST1 71.930 69.920 55.630 90.00 93.18 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013902 0.000000 0.000772 0.00000 SCALE2 0.000000 0.014302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018004 0.00000