HEADER HYDROLASE 09-JUL-10 3NWP TITLE CRYSTAL STRUCTURE OF A 6-PHOSPHOGLUCONOLACTONASE (SBAL_2240) FROM TITLE 2 SHEWANELLA BALTICA OS155 AT 1.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PHOSPHOGLUCONOLACTONASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA BALTICA; SOURCE 3 ORGANISM_TAXID: 407976; SOURCE 4 STRAIN: OS223; SOURCE 5 GENE: SBAL223_2253; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 3NWP 1 REMARK SEQADV REVDAT 4 17-JUL-19 3NWP 1 REMARK LINK REVDAT 3 25-OCT-17 3NWP 1 REMARK REVDAT 2 20-JUL-11 3NWP 1 KEYWDS REVDAT 1 28-JUL-10 3NWP 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A 6-PHOSPHOGLUCONOLACTONASE (SBAL_2240) JRNL TITL 2 FROM SHEWANELLA BALTICA OS155 AT 1.40 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 98361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4919 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5277 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 74.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 278 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -1.78000 REMARK 3 B33 (A**2) : 1.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4203 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2855 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5746 ; 1.625 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7014 ; 0.963 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 5.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;35.671 ;24.432 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 718 ;11.054 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;11.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 635 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4936 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 844 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2678 ; 1.594 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1054 ; 0.466 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4372 ; 2.565 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1525 ; 4.398 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1374 ; 6.627 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9247 4.6271 25.3837 REMARK 3 T TENSOR REMARK 3 T11: 0.0196 T22: 0.0370 REMARK 3 T33: 0.0291 T12: -0.0093 REMARK 3 T13: 0.0272 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.2111 L22: 0.7056 REMARK 3 L33: 0.1112 L12: -0.0990 REMARK 3 L13: 0.0062 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.0108 S13: -0.0156 REMARK 3 S21: 0.0354 S22: -0.0413 S23: -0.0199 REMARK 3 S31: 0.0209 S32: -0.0384 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9304 -32.6965 12.7083 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0126 REMARK 3 T33: 0.0398 T12: -0.0066 REMARK 3 T13: 0.0316 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.0107 L22: 0.5028 REMARK 3 L33: 0.4969 L12: -0.0081 REMARK 3 L13: -0.0371 L23: 0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.0159 S13: -0.0294 REMARK 3 S21: -0.0190 S22: 0.0030 S23: -0.0794 REMARK 3 S31: -0.0860 S32: -0.0398 S33: 0.0217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1.HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL REMARK 3 B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 3.A REMARK 3 MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE REMARK 3 ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REMARK 3 REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4.POLYETHYLENE GLYCOL (PEG), PEG-400 (P6G) AND GLYCEROL (GOL) REMARK 3 MOLECULES FROM CRYSTALLIZATION/CRYOPROTECTANT ARE MODELED IN THE REMARK 3 STRUCTURE. REMARK 4 REMARK 4 3NWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91162,0.97951,0.97936 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98437 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 27.367 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.250 REMARK 200 R MERGE (I) : 0.02100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10.0000% GLYCEROL, 5.0000% PEG-3000, REMARK 280 30.0000% PEG-400, 0.1M HEPES PH 7.5, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.08950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.06500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.06500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.08950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ANALYTICAL SIZE EXCLUSION CHROMATOGRAPHY INDICATES THE REMARK 300 ASSIGNMENT OF A MONOMER AS A SIGNIFICANT OLIGOMERIZATION STATE IN REMARK 300 SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 50 NZ REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 ASN A 124 CG OD1 ND2 REMARK 470 GLU A 195 CD OE1 OE2 REMARK 470 LYS A 223 CE NZ REMARK 470 GLU B 120 CD OE1 OE2 REMARK 470 LYS B 223 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE B 57 CG - SE - CE ANGL. DEV. = -16.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 94 -136.96 56.80 REMARK 500 CYS A 143 -137.06 46.89 REMARK 500 HIS A 172 137.31 80.97 REMARK 500 ASN B 94 -133.76 54.37 REMARK 500 CYS B 143 -134.36 49.69 REMARK 500 HIS B 172 140.32 83.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 253 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G B 255 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 398981 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3NWP A 1 232 UNP B8E528 B8E528_SHEB2 1 232 DBREF 3NWP B 1 232 UNP B8E528 B8E528_SHEB2 1 232 SEQADV 3NWP GLY A 0 UNP B8E528 EXPRESSION TAG SEQADV 3NWP GLY B 0 UNP B8E528 EXPRESSION TAG SEQRES 1 A 233 GLY MSE ILE LYS GLU THR VAL PHE LYS SER PHE ASP THR SEQRES 2 A 233 PRO SER ALA LEU GLU GLN GLN LEU ALA SER LYS ILE ALA SEQRES 3 A 233 SER GLN LEU GLN GLU ALA VAL ASP ALA ARG GLY LYS ALA SEQRES 4 A 233 SER LEU VAL VAL SER GLY GLY SER THR PRO LEU LYS LEU SEQRES 5 A 233 PHE GLN LEU LEU SER MSE LYS SER ILE ASP TRP SER ASP SEQRES 6 A 233 VAL TYR ILE THR LEU ALA ASP GLU ARG TRP VAL GLU ALA SEQRES 7 A 233 ASP ALA ASP ALA SER ASN GLU ARG LEU VAL ARG GLU HIS SEQRES 8 A 233 LEU LEU GLN ASN ARG ALA SER ASN ALA LYS PHE ARG GLY SEQRES 9 A 233 LEU LYS ASN MSE PHE SER THR ALA GLU ALA GLY ALA ASP SEQRES 10 A 233 MSE ALA ALA GLU SER LEU SER ASN PHE PRO ARG PRO PHE SEQRES 11 A 233 ASP VAL VAL VAL LEU GLY MSE GLY ASN ASP GLY HIS THR SEQRES 12 A 233 CYS SER TRP PHE PRO CYS SER ALA GLU LEU GLU ASN ALA SEQRES 13 A 233 LEU THR THR GLN ALA LEU CYS VAL ALA THR ASN PRO THR SEQRES 14 A 233 THR ALA PRO HIS GLY ARG ILE THR LEU SER LYS SER ALA SEQRES 15 A 233 ILE LEU ASN SER ARG GLN ILE TYR LEU HIS LEU VAL GLY SEQRES 16 A 233 GLU GLN LYS LEU SER VAL TYR ARG GLN ALA LEU GLU SER SEQRES 17 A 233 ASP ASP VAL HIS ALA MSE PRO ILE ARG ALA VAL LEU ALA SEQRES 18 A 233 GLN ARG LYS THR PRO VAL ASP VAL PHE TRP SER ALA SEQRES 1 B 233 GLY MSE ILE LYS GLU THR VAL PHE LYS SER PHE ASP THR SEQRES 2 B 233 PRO SER ALA LEU GLU GLN GLN LEU ALA SER LYS ILE ALA SEQRES 3 B 233 SER GLN LEU GLN GLU ALA VAL ASP ALA ARG GLY LYS ALA SEQRES 4 B 233 SER LEU VAL VAL SER GLY GLY SER THR PRO LEU LYS LEU SEQRES 5 B 233 PHE GLN LEU LEU SER MSE LYS SER ILE ASP TRP SER ASP SEQRES 6 B 233 VAL TYR ILE THR LEU ALA ASP GLU ARG TRP VAL GLU ALA SEQRES 7 B 233 ASP ALA ASP ALA SER ASN GLU ARG LEU VAL ARG GLU HIS SEQRES 8 B 233 LEU LEU GLN ASN ARG ALA SER ASN ALA LYS PHE ARG GLY SEQRES 9 B 233 LEU LYS ASN MSE PHE SER THR ALA GLU ALA GLY ALA ASP SEQRES 10 B 233 MSE ALA ALA GLU SER LEU SER ASN PHE PRO ARG PRO PHE SEQRES 11 B 233 ASP VAL VAL VAL LEU GLY MSE GLY ASN ASP GLY HIS THR SEQRES 12 B 233 CYS SER TRP PHE PRO CYS SER ALA GLU LEU GLU ASN ALA SEQRES 13 B 233 LEU THR THR GLN ALA LEU CYS VAL ALA THR ASN PRO THR SEQRES 14 B 233 THR ALA PRO HIS GLY ARG ILE THR LEU SER LYS SER ALA SEQRES 15 B 233 ILE LEU ASN SER ARG GLN ILE TYR LEU HIS LEU VAL GLY SEQRES 16 B 233 GLU GLN LYS LEU SER VAL TYR ARG GLN ALA LEU GLU SER SEQRES 17 B 233 ASP ASP VAL HIS ALA MSE PRO ILE ARG ALA VAL LEU ALA SEQRES 18 B 233 GLN ARG LYS THR PRO VAL ASP VAL PHE TRP SER ALA MODRES 3NWP MSE A 1 MET SELENOMETHIONINE MODRES 3NWP MSE A 57 MET SELENOMETHIONINE MODRES 3NWP MSE A 107 MET SELENOMETHIONINE MODRES 3NWP MSE A 117 MET SELENOMETHIONINE MODRES 3NWP MSE A 136 MET SELENOMETHIONINE MODRES 3NWP MSE A 213 MET SELENOMETHIONINE MODRES 3NWP MSE B 1 MET SELENOMETHIONINE MODRES 3NWP MSE B 57 MET SELENOMETHIONINE MODRES 3NWP MSE B 107 MET SELENOMETHIONINE MODRES 3NWP MSE B 117 MET SELENOMETHIONINE MODRES 3NWP MSE B 136 MET SELENOMETHIONINE MODRES 3NWP MSE B 213 MET SELENOMETHIONINE HET MSE A 1 16 HET MSE A 57 16 HET MSE A 107 16 HET MSE A 117 8 HET MSE A 136 8 HET MSE A 213 8 HET MSE B 1 8 HET MSE B 57 8 HET MSE B 107 16 HET MSE B 117 8 HET MSE B 136 8 HET MSE B 213 8 HET GOL A 250 6 HET P6G A 254 19 HET GOL B 251 6 HET PEG B 252 7 HET PG4 B 253 13 HET P6G B 255 19 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 P6G 2(C12 H26 O7) FORMUL 6 PEG C4 H10 O3 FORMUL 7 PG4 C8 H18 O5 FORMUL 9 HOH *487(H2 O) HELIX 1 1 THR A 12 GLY A 36 1 25 HELIX 2 2 PRO A 48 LYS A 58 1 11 HELIX 3 3 ASP A 61 SER A 63 5 3 HELIX 4 4 SER A 82 LEU A 91 1 10 HELIX 5 5 GLN A 93 ALA A 99 5 7 HELIX 6 6 THR A 110 LEU A 122 1 13 HELIX 7 7 GLU A 151 THR A 158 1 8 HELIX 8 8 SER A 178 ASN A 184 1 7 HELIX 9 9 GLY A 194 GLU A 206 1 13 HELIX 10 10 ILE A 215 ALA A 220 1 6 HELIX 11 11 THR B 12 GLY B 36 1 25 HELIX 12 12 PRO B 48 LYS B 58 1 11 HELIX 13 13 ASP B 61 SER B 63 5 3 HELIX 14 14 SER B 82 LEU B 91 1 10 HELIX 15 15 GLN B 93 ALA B 99 5 7 HELIX 16 16 THR B 110 LEU B 122 1 13 HELIX 17 17 GLU B 151 THR B 158 1 8 HELIX 18 18 SER B 178 ASN B 184 1 7 HELIX 19 19 GLY B 194 GLU B 206 1 13 HELIX 20 20 ILE B 215 ALA B 220 1 6 SHEET 1 A 7 PHE A 7 PHE A 10 0 SHEET 2 A 7 VAL A 226 SER A 231 1 O VAL A 228 N LYS A 8 SHEET 3 A 7 ILE A 188 VAL A 193 1 N LEU A 192 O PHE A 229 SHEET 4 A 7 VAL A 131 LEU A 134 1 N LEU A 134 O TYR A 189 SHEET 5 A 7 ALA A 38 VAL A 42 1 N VAL A 41 O VAL A 133 SHEET 6 A 7 VAL A 65 LEU A 69 1 O TYR A 66 N ALA A 38 SHEET 7 A 7 LYS A 100 PHE A 101 1 O LYS A 100 N VAL A 65 SHEET 1 B 3 ASP A 71 ARG A 73 0 SHEET 2 B 3 ARG A 174 LEU A 177 -1 O ILE A 175 N GLU A 72 SHEET 3 B 3 CYS A 162 THR A 165 -1 N THR A 165 O ARG A 174 SHEET 1 C 7 PHE B 7 SER B 9 0 SHEET 2 C 7 VAL B 226 SER B 231 1 O VAL B 228 N LYS B 8 SHEET 3 C 7 ILE B 188 VAL B 193 1 N LEU B 190 O PHE B 229 SHEET 4 C 7 VAL B 131 LEU B 134 1 N LEU B 134 O TYR B 189 SHEET 5 C 7 ALA B 38 VAL B 42 1 N VAL B 41 O VAL B 133 SHEET 6 C 7 VAL B 65 LEU B 69 1 O TYR B 66 N ALA B 38 SHEET 7 C 7 LYS B 100 PHE B 101 1 O LYS B 100 N VAL B 65 SHEET 1 D 3 ASP B 71 ARG B 73 0 SHEET 2 D 3 ARG B 174 LEU B 177 -1 O ILE B 175 N GLU B 72 SHEET 3 D 3 CYS B 162 THR B 165 -1 N THR B 165 O ARG B 174 LINK C GLY A 0 N AMSE A 1 1555 1555 1.32 LINK C GLY A 0 N BMSE A 1 1555 1555 1.34 LINK C AMSE A 1 N ILE A 2 1555 1555 1.33 LINK C BMSE A 1 N ILE A 2 1555 1555 1.33 LINK C SER A 56 N AMSE A 57 1555 1555 1.33 LINK C SER A 56 N BMSE A 57 1555 1555 1.33 LINK C AMSE A 57 N LYS A 58 1555 1555 1.35 LINK C BMSE A 57 N LYS A 58 1555 1555 1.34 LINK C ASN A 106 N AMSE A 107 1555 1555 1.35 LINK C ASN A 106 N BMSE A 107 1555 1555 1.34 LINK C AMSE A 107 N PHE A 108 1555 1555 1.33 LINK C BMSE A 107 N PHE A 108 1555 1555 1.33 LINK C ASP A 116 N MSE A 117 1555 1555 1.33 LINK C MSE A 117 N ALA A 118 1555 1555 1.33 LINK C GLY A 135 N MSE A 136 1555 1555 1.32 LINK C MSE A 136 N GLY A 137 1555 1555 1.35 LINK C ALA A 212 N MSE A 213 1555 1555 1.32 LINK C MSE A 213 N PRO A 214 1555 1555 1.35 LINK C GLY B 0 N MSE B 1 1555 1555 1.31 LINK C MSE B 1 N ILE B 2 1555 1555 1.33 LINK C SER B 56 N MSE B 57 1555 1555 1.32 LINK C MSE B 57 N LYS B 58 1555 1555 1.33 LINK C ASN B 106 N AMSE B 107 1555 1555 1.33 LINK C ASN B 106 N BMSE B 107 1555 1555 1.32 LINK C AMSE B 107 N PHE B 108 1555 1555 1.32 LINK C BMSE B 107 N PHE B 108 1555 1555 1.35 LINK C ASP B 116 N MSE B 117 1555 1555 1.33 LINK C MSE B 117 N ALA B 118 1555 1555 1.33 LINK C GLY B 135 N MSE B 136 1555 1555 1.34 LINK C MSE B 136 N GLY B 137 1555 1555 1.33 LINK C ALA B 212 N MSE B 213 1555 1555 1.35 LINK C MSE B 213 N PRO B 214 1555 1555 1.35 CISPEP 1 ARG A 127 PRO A 128 0 4.50 CISPEP 2 ARG B 127 PRO B 128 0 2.09 SITE 1 AC1 8 GLU A 4 LEU A 219 GLN A 221 VAL A 226 SITE 2 AC1 8 HOH A 257 HOH A 267 HOH A 471 HOH A 609 SITE 1 AC2 11 THR A 5 PHE A 7 SER A 59 ARG A 202 SITE 2 AC2 11 HOH A 416 HOH A 677 PHE B 7 LEU B 198 SITE 3 AC2 11 ARG B 202 P6G B 255 HOH B 583 SITE 1 AC3 9 GLU B 4 LEU B 219 PRO B 225 VAL B 226 SITE 2 AC3 9 HOH B 283 HOH B 285 HOH B 367 HOH B 566 SITE 3 AC3 9 HOH B 658 SITE 1 AC4 4 GLN B 19 SER B 22 LYS B 23 SER B 26 SITE 1 AC5 4 PRO B 167 THR B 168 ALA B 170 HIS B 172 SITE 1 AC6 12 PHE A 7 SER A 9 LEU A 198 ARG A 202 SITE 2 AC6 12 P6G A 254 MSE B 1 THR B 5 PHE B 7 SITE 3 AC6 12 ARG B 202 HOH B 385 HOH B 583 HOH B 633 CRYST1 46.179 72.019 154.130 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006488 0.00000