HEADER CELL CYCLE 10-JUL-10 3NWS TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE YEAST TELOMERE- TITLE 2 BINDING AND TELOMERASE REGULATORY PROTEIN CDC13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 13; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 13-227); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CDC13, YDL220C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OB FOLD, OLIGONUCLEOTIDE/OLIGOSACCHARIDE BINDING FOLD - OB FOLD, KEYWDS 2 SINGLE STRANDED TELOMERIC DNA BINDING, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR M.T.MITCHELL,J.S.SMITH,M.MASON,S.HARPER,D.W.SPEICHER,F.B.JOHNSON, AUTHOR 2 E.SKORDALAKES REVDAT 3 21-FEB-24 3NWS 1 SEQADV REVDAT 2 19-JAN-11 3NWS 1 JRNL REVDAT 1 22-SEP-10 3NWS 0 JRNL AUTH M.T.MITCHELL,J.S.SMITH,M.MASON,S.HARPER,D.W.SPEICHER, JRNL AUTH 2 F.B.JOHNSON,E.SKORDALAKES JRNL TITL CDC13 N-TERMINAL DIMERIZATION, DNA BINDING, AND TELOMERE JRNL TITL 2 LENGTH REGULATION. JRNL REF MOL.CELL.BIOL. V. 30 5325 2010 JRNL REFN ISSN 0270-7306 JRNL PMID 20837709 JRNL DOI 10.1128/MCB.00515-10 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 29636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.47000 REMARK 3 B22 (A**2) : 4.46000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : -0.91000 REMARK 3 B13 (A**2) : -1.06000 REMARK 3 B23 (A**2) : 2.41000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.358 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.317 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6472 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8700 ; 1.295 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 768 ; 7.225 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 312 ;39.830 ;24.487 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1264 ;20.997 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;16.858 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1012 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4708 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2720 ; 0.253 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4383 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 198 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.299 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.073 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1873 12.7235 -47.7076 REMARK 3 T TENSOR REMARK 3 T11: 0.0229 T22: -0.1087 REMARK 3 T33: -0.0381 T12: -0.0163 REMARK 3 T13: 0.0183 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 3.4670 L22: 1.8412 REMARK 3 L33: 2.3716 L12: -0.2281 REMARK 3 L13: 0.4147 L23: 0.0476 REMARK 3 S TENSOR REMARK 3 S11: 0.0764 S12: 0.3607 S13: -0.0048 REMARK 3 S21: -0.3499 S22: -0.0371 S23: -0.0855 REMARK 3 S31: 0.1767 S32: 0.1847 S33: -0.0393 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 224 REMARK 3 ORIGIN FOR THE GROUP (A): -30.7905 31.6460 -42.9929 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: -0.1041 REMARK 3 T33: -0.0502 T12: 0.0085 REMARK 3 T13: 0.0287 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 2.4340 L22: 1.8995 REMARK 3 L33: 1.7823 L12: 0.8997 REMARK 3 L13: 0.1372 L23: 0.0842 REMARK 3 S TENSOR REMARK 3 S11: 0.1319 S12: -0.0875 S13: -0.1162 REMARK 3 S21: 0.3060 S22: -0.1371 S23: 0.0203 REMARK 3 S31: -0.1256 S32: -0.0863 S33: 0.0052 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 224 REMARK 3 ORIGIN FOR THE GROUP (A): -3.8937 0.0732 -20.5127 REMARK 3 T TENSOR REMARK 3 T11: 0.0132 T22: -0.0608 REMARK 3 T33: -0.0674 T12: 0.0057 REMARK 3 T13: 0.0026 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 1.9506 L22: 1.9176 REMARK 3 L33: 2.1664 L12: 0.7078 REMARK 3 L13: 0.4907 L23: 0.1223 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: -0.1828 S13: 0.0017 REMARK 3 S21: 0.1369 S22: -0.0600 S23: -0.1008 REMARK 3 S31: 0.3680 S32: -0.0363 S33: -0.0456 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 13 D 224 REMARK 3 ORIGIN FOR THE GROUP (A): -34.9836 15.3296 -8.4116 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: -0.0820 REMARK 3 T33: -0.0889 T12: 0.0139 REMARK 3 T13: 0.0059 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 3.2043 L22: 2.0178 REMARK 3 L33: 2.9501 L12: 0.4792 REMARK 3 L13: -0.7228 L23: -0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.1753 S13: 0.1707 REMARK 3 S21: -0.1519 S22: -0.0005 S23: 0.1362 REMARK 3 S31: -0.5349 S32: -0.1648 S33: -0.0942 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29636 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39600 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3,350K, 0.01 M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE AND 50 MM HEPES (PH 7.0), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 HIS A 10 REMARK 465 MET A 11 REMARK 465 MET A 12 REMARK 465 ASP A 106 REMARK 465 SER A 107 REMARK 465 GLY A 108 REMARK 465 ALA A 109 REMARK 465 SER A 110 REMARK 465 PRO A 111 REMARK 465 THR A 160 REMARK 465 LYS A 161 REMARK 465 SER A 162 REMARK 465 THR A 163 REMARK 465 ASN A 164 REMARK 465 SER A 165 REMARK 465 SER A 166 REMARK 465 LYS A 167 REMARK 465 HIS A 168 REMARK 465 SER A 169 REMARK 465 SER A 170 REMARK 465 SER A 225 REMARK 465 GLN A 226 REMARK 465 LYS A 227 REMARK 465 GLY B 9 REMARK 465 HIS B 10 REMARK 465 MET B 11 REMARK 465 MET B 12 REMARK 465 ASP B 106 REMARK 465 SER B 107 REMARK 465 GLY B 108 REMARK 465 ALA B 109 REMARK 465 SER B 110 REMARK 465 PRO B 111 REMARK 465 THR B 160 REMARK 465 LYS B 161 REMARK 465 SER B 162 REMARK 465 THR B 163 REMARK 465 ASN B 164 REMARK 465 SER B 165 REMARK 465 SER B 166 REMARK 465 LYS B 167 REMARK 465 HIS B 168 REMARK 465 SER B 169 REMARK 465 SER B 170 REMARK 465 SER B 225 REMARK 465 GLN B 226 REMARK 465 LYS B 227 REMARK 465 GLY C 9 REMARK 465 HIS C 10 REMARK 465 MET C 11 REMARK 465 MET C 12 REMARK 465 ASP C 106 REMARK 465 SER C 107 REMARK 465 GLY C 108 REMARK 465 ALA C 109 REMARK 465 SER C 110 REMARK 465 PRO C 111 REMARK 465 THR C 160 REMARK 465 LYS C 161 REMARK 465 SER C 162 REMARK 465 THR C 163 REMARK 465 ASN C 164 REMARK 465 SER C 165 REMARK 465 SER C 166 REMARK 465 LYS C 167 REMARK 465 HIS C 168 REMARK 465 SER C 169 REMARK 465 SER C 170 REMARK 465 SER C 225 REMARK 465 GLN C 226 REMARK 465 LYS C 227 REMARK 465 GLY D 9 REMARK 465 HIS D 10 REMARK 465 MET D 11 REMARK 465 MET D 12 REMARK 465 ASP D 106 REMARK 465 SER D 107 REMARK 465 GLY D 108 REMARK 465 ALA D 109 REMARK 465 SER D 110 REMARK 465 PRO D 111 REMARK 465 THR D 160 REMARK 465 LYS D 161 REMARK 465 SER D 162 REMARK 465 THR D 163 REMARK 465 ASN D 164 REMARK 465 SER D 165 REMARK 465 SER D 166 REMARK 465 LYS D 167 REMARK 465 HIS D 168 REMARK 465 SER D 169 REMARK 465 SER D 170 REMARK 465 SER D 225 REMARK 465 GLN D 226 REMARK 465 LYS D 227 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O CYS D 177 ND2 ASN D 180 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 78.67 -158.40 REMARK 500 ARG A 60 92.48 -59.73 REMARK 500 GLN A 64 -48.01 -156.92 REMARK 500 LYS A 77 -55.52 -142.37 REMARK 500 CYS A 124 72.21 -117.90 REMARK 500 ILE A 158 1.80 -63.41 REMARK 500 GLU A 176 -131.18 -89.68 REMARK 500 CYS A 177 43.13 -100.87 REMARK 500 GLN A 220 -50.53 -124.49 REMARK 500 ARG B 60 52.72 -54.14 REMARK 500 GLN B 64 -108.88 -92.17 REMARK 500 LYS B 77 -66.80 -140.66 REMARK 500 ASP B 104 35.19 -84.90 REMARK 500 GLU B 176 -126.38 -119.29 REMARK 500 ARG B 195 11.47 -69.82 REMARK 500 ASP B 219 -121.46 -64.27 REMARK 500 GLN B 220 -76.27 -19.66 REMARK 500 THR C 47 -168.46 -118.95 REMARK 500 THR C 49 -8.39 -140.36 REMARK 500 ARG C 60 103.44 -44.51 REMARK 500 GLN C 64 -104.02 -45.74 REMARK 500 LEU C 74 74.42 -109.38 REMARK 500 LYS C 77 -85.17 -123.20 REMARK 500 ASP C 78 -176.20 -62.23 REMARK 500 LEU C 103 -48.13 -28.43 REMARK 500 GLU C 176 -54.56 -156.08 REMARK 500 ASP C 210 141.96 -170.63 REMARK 500 PRO D 28 -171.50 -58.54 REMARK 500 ARG D 60 11.63 -66.07 REMARK 500 ARG D 61 -70.57 18.02 REMARK 500 ASP D 63 86.57 -62.66 REMARK 500 GLN D 64 68.61 -68.15 REMARK 500 LYS D 77 -56.44 -135.39 REMARK 500 ASP D 102 155.59 -42.94 REMARK 500 CYS D 124 73.55 -110.69 REMARK 500 HIS D 136 45.52 38.68 REMARK 500 GLU D 176 -141.03 -97.89 REMARK 500 ASP D 219 -130.39 -84.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 209 ASP A 210 -141.84 REMARK 500 TYR C 209 ASP C 210 -126.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NWT RELATED DB: PDB DBREF 3NWS A 13 227 UNP P32797 CDC13_YEAST 13 227 DBREF 3NWS B 13 227 UNP P32797 CDC13_YEAST 13 227 DBREF 3NWS C 13 227 UNP P32797 CDC13_YEAST 13 227 DBREF 3NWS D 13 227 UNP P32797 CDC13_YEAST 13 227 SEQADV 3NWS GLY A 9 UNP P32797 EXPRESSION TAG SEQADV 3NWS HIS A 10 UNP P32797 EXPRESSION TAG SEQADV 3NWS MET A 11 UNP P32797 EXPRESSION TAG SEQADV 3NWS MET A 12 UNP P32797 EXPRESSION TAG SEQADV 3NWS GLY B 9 UNP P32797 EXPRESSION TAG SEQADV 3NWS HIS B 10 UNP P32797 EXPRESSION TAG SEQADV 3NWS MET B 11 UNP P32797 EXPRESSION TAG SEQADV 3NWS MET B 12 UNP P32797 EXPRESSION TAG SEQADV 3NWS GLY C 9 UNP P32797 EXPRESSION TAG SEQADV 3NWS HIS C 10 UNP P32797 EXPRESSION TAG SEQADV 3NWS MET C 11 UNP P32797 EXPRESSION TAG SEQADV 3NWS MET C 12 UNP P32797 EXPRESSION TAG SEQADV 3NWS GLY D 9 UNP P32797 EXPRESSION TAG SEQADV 3NWS HIS D 10 UNP P32797 EXPRESSION TAG SEQADV 3NWS MET D 11 UNP P32797 EXPRESSION TAG SEQADV 3NWS MET D 12 UNP P32797 EXPRESSION TAG SEQRES 1 A 219 GLY HIS MET MET LYS ASN ARG ILE PHE VAL SER SER SER SEQRES 2 A 219 LYS ASP PHE GLU GLY TYR PRO SER LYS ALA ILE VAL PRO SEQRES 3 A 219 VAL GLN PHE VAL ALA LEU LEU THR SER ILE HIS LEU THR SEQRES 4 A 219 GLU THR LYS CYS LEU LEU GLY PHE SER ASN PHE GLU ARG SEQRES 5 A 219 ARG GLY ASP GLN SER GLN GLU ASP GLN TYR LEU ILE LYS SEQRES 6 A 219 LEU LYS PHE LYS ASP ARG GLY SER GLU ARG LEU ALA ARG SEQRES 7 A 219 ILE THR ILE SER LEU LEU CYS GLN TYR PHE ASP ILE GLU SEQRES 8 A 219 LEU PRO ASP LEU ASP SER ASP SER GLY ALA SER PRO THR SEQRES 9 A 219 VAL ILE LEU ARG ASP ILE HIS LEU GLU ARG LEU CYS PHE SEQRES 10 A 219 SER SER CYS LYS ALA LEU TYR VAL SER LYS HIS GLY ASN SEQRES 11 A 219 TYR THR LEU PHE LEU GLU ASP ILE LYS PRO LEU ASP LEU SEQRES 12 A 219 VAL SER VAL ILE SER THR ILE SER THR LYS SER THR ASN SEQRES 13 A 219 SER SER LYS HIS SER SER SER GLU LEU ILE SER GLU CYS SEQRES 14 A 219 ASP LEU ASN ASN SER LEU VAL ASP ILE PHE ASN ASN LEU SEQRES 15 A 219 ILE GLU MET ASN ARG ASP GLU LYS ASN ARG PHE LYS PHE SEQRES 16 A 219 VAL LYS LEU ILE HIS TYR ASP ILE GLU LEU LYS LYS PHE SEQRES 17 A 219 VAL GLN ASP GLN GLN LYS VAL LEU SER GLN LYS SEQRES 1 B 219 GLY HIS MET MET LYS ASN ARG ILE PHE VAL SER SER SER SEQRES 2 B 219 LYS ASP PHE GLU GLY TYR PRO SER LYS ALA ILE VAL PRO SEQRES 3 B 219 VAL GLN PHE VAL ALA LEU LEU THR SER ILE HIS LEU THR SEQRES 4 B 219 GLU THR LYS CYS LEU LEU GLY PHE SER ASN PHE GLU ARG SEQRES 5 B 219 ARG GLY ASP GLN SER GLN GLU ASP GLN TYR LEU ILE LYS SEQRES 6 B 219 LEU LYS PHE LYS ASP ARG GLY SER GLU ARG LEU ALA ARG SEQRES 7 B 219 ILE THR ILE SER LEU LEU CYS GLN TYR PHE ASP ILE GLU SEQRES 8 B 219 LEU PRO ASP LEU ASP SER ASP SER GLY ALA SER PRO THR SEQRES 9 B 219 VAL ILE LEU ARG ASP ILE HIS LEU GLU ARG LEU CYS PHE SEQRES 10 B 219 SER SER CYS LYS ALA LEU TYR VAL SER LYS HIS GLY ASN SEQRES 11 B 219 TYR THR LEU PHE LEU GLU ASP ILE LYS PRO LEU ASP LEU SEQRES 12 B 219 VAL SER VAL ILE SER THR ILE SER THR LYS SER THR ASN SEQRES 13 B 219 SER SER LYS HIS SER SER SER GLU LEU ILE SER GLU CYS SEQRES 14 B 219 ASP LEU ASN ASN SER LEU VAL ASP ILE PHE ASN ASN LEU SEQRES 15 B 219 ILE GLU MET ASN ARG ASP GLU LYS ASN ARG PHE LYS PHE SEQRES 16 B 219 VAL LYS LEU ILE HIS TYR ASP ILE GLU LEU LYS LYS PHE SEQRES 17 B 219 VAL GLN ASP GLN GLN LYS VAL LEU SER GLN LYS SEQRES 1 C 219 GLY HIS MET MET LYS ASN ARG ILE PHE VAL SER SER SER SEQRES 2 C 219 LYS ASP PHE GLU GLY TYR PRO SER LYS ALA ILE VAL PRO SEQRES 3 C 219 VAL GLN PHE VAL ALA LEU LEU THR SER ILE HIS LEU THR SEQRES 4 C 219 GLU THR LYS CYS LEU LEU GLY PHE SER ASN PHE GLU ARG SEQRES 5 C 219 ARG GLY ASP GLN SER GLN GLU ASP GLN TYR LEU ILE LYS SEQRES 6 C 219 LEU LYS PHE LYS ASP ARG GLY SER GLU ARG LEU ALA ARG SEQRES 7 C 219 ILE THR ILE SER LEU LEU CYS GLN TYR PHE ASP ILE GLU SEQRES 8 C 219 LEU PRO ASP LEU ASP SER ASP SER GLY ALA SER PRO THR SEQRES 9 C 219 VAL ILE LEU ARG ASP ILE HIS LEU GLU ARG LEU CYS PHE SEQRES 10 C 219 SER SER CYS LYS ALA LEU TYR VAL SER LYS HIS GLY ASN SEQRES 11 C 219 TYR THR LEU PHE LEU GLU ASP ILE LYS PRO LEU ASP LEU SEQRES 12 C 219 VAL SER VAL ILE SER THR ILE SER THR LYS SER THR ASN SEQRES 13 C 219 SER SER LYS HIS SER SER SER GLU LEU ILE SER GLU CYS SEQRES 14 C 219 ASP LEU ASN ASN SER LEU VAL ASP ILE PHE ASN ASN LEU SEQRES 15 C 219 ILE GLU MET ASN ARG ASP GLU LYS ASN ARG PHE LYS PHE SEQRES 16 C 219 VAL LYS LEU ILE HIS TYR ASP ILE GLU LEU LYS LYS PHE SEQRES 17 C 219 VAL GLN ASP GLN GLN LYS VAL LEU SER GLN LYS SEQRES 1 D 219 GLY HIS MET MET LYS ASN ARG ILE PHE VAL SER SER SER SEQRES 2 D 219 LYS ASP PHE GLU GLY TYR PRO SER LYS ALA ILE VAL PRO SEQRES 3 D 219 VAL GLN PHE VAL ALA LEU LEU THR SER ILE HIS LEU THR SEQRES 4 D 219 GLU THR LYS CYS LEU LEU GLY PHE SER ASN PHE GLU ARG SEQRES 5 D 219 ARG GLY ASP GLN SER GLN GLU ASP GLN TYR LEU ILE LYS SEQRES 6 D 219 LEU LYS PHE LYS ASP ARG GLY SER GLU ARG LEU ALA ARG SEQRES 7 D 219 ILE THR ILE SER LEU LEU CYS GLN TYR PHE ASP ILE GLU SEQRES 8 D 219 LEU PRO ASP LEU ASP SER ASP SER GLY ALA SER PRO THR SEQRES 9 D 219 VAL ILE LEU ARG ASP ILE HIS LEU GLU ARG LEU CYS PHE SEQRES 10 D 219 SER SER CYS LYS ALA LEU TYR VAL SER LYS HIS GLY ASN SEQRES 11 D 219 TYR THR LEU PHE LEU GLU ASP ILE LYS PRO LEU ASP LEU SEQRES 12 D 219 VAL SER VAL ILE SER THR ILE SER THR LYS SER THR ASN SEQRES 13 D 219 SER SER LYS HIS SER SER SER GLU LEU ILE SER GLU CYS SEQRES 14 D 219 ASP LEU ASN ASN SER LEU VAL ASP ILE PHE ASN ASN LEU SEQRES 15 D 219 ILE GLU MET ASN ARG ASP GLU LYS ASN ARG PHE LYS PHE SEQRES 16 D 219 VAL LYS LEU ILE HIS TYR ASP ILE GLU LEU LYS LYS PHE SEQRES 17 D 219 VAL GLN ASP GLN GLN LYS VAL LEU SER GLN LYS FORMUL 5 HOH *26(H2 O) HELIX 1 1 SER A 20 GLU A 25 5 6 HELIX 2 2 ASP A 78 PHE A 96 1 19 HELIX 3 3 ASP A 117 GLU A 121 5 5 HELIX 4 4 ASP A 150 ILE A 158 1 9 HELIX 5 5 CYS A 177 ARG A 195 1 19 HELIX 6 6 ASP A 210 GLN A 220 1 11 HELIX 7 7 SER B 20 TYR B 27 5 8 HELIX 8 8 ASP B 78 PHE B 96 1 19 HELIX 9 9 ASP B 117 ARG B 122 1 6 HELIX 10 10 ASP B 150 ILE B 158 1 9 HELIX 11 11 CYS B 177 ARG B 195 1 19 HELIX 12 12 LYS B 202 LEU B 206 5 5 HELIX 13 13 ASP B 210 ASP B 219 1 10 HELIX 14 14 ASP B 219 LEU B 224 1 6 HELIX 15 15 SER C 20 TYR C 27 5 8 HELIX 16 16 ASP C 78 PHE C 96 1 19 HELIX 17 17 ASP C 117 GLU C 121 5 5 HELIX 18 18 ASP C 150 SER C 159 1 10 HELIX 19 19 CYS C 177 ASP C 196 1 20 HELIX 20 20 LYS C 202 LEU C 206 5 5 HELIX 21 21 ASP C 210 GLN C 220 1 11 HELIX 22 22 SER D 20 TYR D 27 5 8 HELIX 23 23 ASP D 78 PHE D 96 1 19 HELIX 24 24 ASP D 117 GLU D 121 5 5 HELIX 25 25 ASP D 150 ILE D 158 1 9 HELIX 26 26 CYS D 177 ASP D 196 1 20 HELIX 27 27 LYS D 202 LEU D 206 5 5 HELIX 28 28 ASP D 210 ASP D 219 1 10 HELIX 29 29 ASP D 219 LEU D 224 1 6 SHEET 1 A 8 ILE A 16 PHE A 17 0 SHEET 2 A 8 VAL A 113 LEU A 115 0 SHEET 3 A 8 CYS A 51 SER A 56 0 SHEET 4 A 8 TYR A 70 LYS A 73 -1 O ILE A 72 N LEU A 53 SHEET 5 A 8 ASN A 138 PRO A 148 1 O LEU A 141 N LYS A 73 SHEET 6 A 8 PHE A 125 LYS A 135 -1 N LYS A 135 O ASN A 138 SHEET 7 A 8 ALA A 31 LEU A 46 -1 N VAL A 33 O TYR A 132 SHEET 8 A 8 VAL A 113 LEU A 115 -1 O LEU A 115 N ILE A 44 SHEET 1 B 8 ILE B 16 PHE B 17 0 SHEET 2 B 8 VAL B 113 LEU B 115 0 SHEET 3 B 8 CYS B 51 SER B 56 0 SHEET 4 B 8 TYR B 70 LYS B 73 -1 O ILE B 72 N LEU B 53 SHEET 5 B 8 ASN B 138 PRO B 148 1 O LEU B 141 N LYS B 73 SHEET 6 B 8 PHE B 125 LYS B 135 -1 N LYS B 129 O GLU B 144 SHEET 7 B 8 ILE B 32 LEU B 46 -1 N PHE B 37 O CYS B 128 SHEET 8 B 8 VAL B 113 LEU B 115 -1 O LEU B 115 N ILE B 44 SHEET 1 C 8 ILE C 16 PHE C 17 0 SHEET 2 C 8 VAL C 113 LEU C 115 0 SHEET 3 C 8 CYS C 51 SER C 56 0 SHEET 4 C 8 TYR C 70 LYS C 73 -1 O ILE C 72 N LEU C 53 SHEET 5 C 8 ASN C 138 PRO C 148 1 O LEU C 141 N LYS C 73 SHEET 6 C 8 PHE C 125 LYS C 135 -1 N SER C 127 O LYS C 147 SHEET 7 C 8 ALA C 31 LEU C 46 -1 N VAL C 33 O TYR C 132 SHEET 8 C 8 VAL C 113 LEU C 115 -1 O LEU C 115 N ILE C 44 SHEET 1 D 8 ILE D 16 PHE D 17 0 SHEET 2 D 8 VAL D 113 LEU D 115 0 SHEET 3 D 8 CYS D 51 SER D 56 0 SHEET 4 D 8 TYR D 70 LYS D 73 -1 O TYR D 70 N PHE D 55 SHEET 5 D 8 ASN D 138 PRO D 148 1 O LEU D 141 N LYS D 73 SHEET 6 D 8 PHE D 125 LYS D 135 -1 N LYS D 129 O GLU D 144 SHEET 7 D 8 ALA D 31 LEU D 46 -1 N VAL D 33 O TYR D 132 SHEET 8 D 8 VAL D 113 LEU D 115 -1 O LEU D 115 N ILE D 44 CISPEP 1 ARG A 61 GLY A 62 0 1.30 CISPEP 2 GLY B 62 ASP B 63 0 -0.10 CISPEP 3 GLY C 62 ASP C 63 0 -13.54 CRYST1 61.964 66.866 68.138 116.22 90.29 94.72 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016138 0.001333 0.000751 0.00000 SCALE2 0.000000 0.015006 0.007432 0.00000 SCALE3 0.000000 0.000000 0.016377 0.00000