data_3NXN # _entry.id 3NXN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3NXN RCSB RCSB060407 WWPDB D_1000060407 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3NWX . unspecified PDB 3NWQ . unspecified PDB 3NXE . unspecified PDB 3HAU . unspecified PDB 3HDK . unspecified PDB 3HLO . unspecified PDB 3NYG . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NXN _pdbx_database_status.recvd_initial_deposition_date 2010-07-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Torbeev, V.Y.' 1 'Kent, S.B.H.' 2 # _citation.id primary _citation.title 'Protein conformational dynamics in the mechanism of HIV-1 protease catalysis.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 20982 _citation.page_last 20987 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22158985 _citation.pdbx_database_id_DOI 10.1073/pnas.1111202108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Torbeev, V.Y.' 1 ? primary 'Raghuraman, H.' 2 ? primary 'Hamelberg, D.' 3 ? primary 'Tonelli, M.' 4 ? primary 'Westler, W.M.' 5 ? primary 'Perozo, E.' 6 ? primary 'Kent, S.B.' 7 ? # _cell.entry_id 3NXN _cell.length_a 51.871 _cell.length_b 57.644 _cell.length_c 61.640 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NXN _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'protease covalent dimer' 21892.635 1 3.4.23.16 ? ? ? 2 non-polymer syn ;N~2~-[(2R,5S)-5-({(2S,3S)-2-[(N-acetyl-L-threonyl)amino]-3-methylpent-4-enoyl}amino)-2-butyl-4,4-dihydroxynonanoyl]-L-glutaminyl-L-argininamide ; 800.986 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 4 water nat water 18.015 98 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;PQITLWKRPLVTIRIGGQLKEALLDTGADDTVIEE(NLE)NLPG(YCM)WKPK(NLE)IGGIGGFIKVRQYDQIPVEI (ABA)GHKAIGTVLVGPTPVNIIGRNLLTQIG(ABA)TLNF(YCM)GGGGPQITLWKRPLVTIRIGGQLKEALLDTGADD TVIEE(NLE)NLPG(YCM)WKPK(NLE)IGG(OIL)GGFIKVRQYDQIPVEI(ABA)GHKAIGTVLVGPTPVNIIGRNLL TQIG(ABA)TLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQITLWKRPLVTIRIGGQLKEALLDTGADDTVIEELNLPGCWKPKLIGGIGGFIKVRQYDQIPVEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNFCGGGGPQITLWKRPLVTIRIGGQLKEALLDTGADDTVIEELNLPGCWKPKLIGGXGGFIKV RQYDQIPVEIAGHKAIGTVLVGPTPVNIIGRNLLTQIGATLNF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 ARG n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 ILE n 1 34 GLU n 1 35 GLU n 1 36 NLE n 1 37 ASN n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 YCM n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 NLE n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 PRO n 1 64 VAL n 1 65 GLU n 1 66 ILE n 1 67 ABA n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 ABA n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n 1 100 YCM n 1 101 GLY n 1 102 GLY n 1 103 GLY n 1 104 GLY n 1 105 PRO n 1 106 GLN n 1 107 ILE n 1 108 THR n 1 109 LEU n 1 110 TRP n 1 111 LYS n 1 112 ARG n 1 113 PRO n 1 114 LEU n 1 115 VAL n 1 116 THR n 1 117 ILE n 1 118 ARG n 1 119 ILE n 1 120 GLY n 1 121 GLY n 1 122 GLN n 1 123 LEU n 1 124 LYS n 1 125 GLU n 1 126 ALA n 1 127 LEU n 1 128 LEU n 1 129 ASP n 1 130 THR n 1 131 GLY n 1 132 ALA n 1 133 ASP n 1 134 ASP n 1 135 THR n 1 136 VAL n 1 137 ILE n 1 138 GLU n 1 139 GLU n 1 140 NLE n 1 141 ASN n 1 142 LEU n 1 143 PRO n 1 144 GLY n 1 145 YCM n 1 146 TRP n 1 147 LYS n 1 148 PRO n 1 149 LYS n 1 150 NLE n 1 151 ILE n 1 152 GLY n 1 153 GLY n 1 154 OIL n 1 155 GLY n 1 156 GLY n 1 157 PHE n 1 158 ILE n 1 159 LYS n 1 160 VAL n 1 161 ARG n 1 162 GLN n 1 163 TYR n 1 164 ASP n 1 165 GLN n 1 166 ILE n 1 167 PRO n 1 168 VAL n 1 169 GLU n 1 170 ILE n 1 171 ABA n 1 172 GLY n 1 173 HIS n 1 174 LYS n 1 175 ALA n 1 176 ILE n 1 177 GLY n 1 178 THR n 1 179 VAL n 1 180 LEU n 1 181 VAL n 1 182 GLY n 1 183 PRO n 1 184 THR n 1 185 PRO n 1 186 VAL n 1 187 ASN n 1 188 ILE n 1 189 ILE n 1 190 GLY n 1 191 ARG n 1 192 ASN n 1 193 LEU n 1 194 LEU n 1 195 THR n 1 196 GLN n 1 197 ILE n 1 198 GLY n 1 199 ABA n 1 200 THR n 1 201 LEU n 1 202 ASN n 1 203 PHE n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemical protein synthesis' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3NXN _struct_ref.pdbx_db_accession 3NXN _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NXN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 203 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3NXN _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 203 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 203 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ABA 'L-peptide linking' n 'ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KVS non-polymer . ;N~2~-[(2R,5S)-5-({(2S,3S)-2-[(N-acetyl-L-threonyl)amino]-3-methylpent-4-enoyl}amino)-2-butyl-4,4-dihydroxynonanoyl]-L-glutaminyl-L-argininamide ; ? 'C36 H68 N10 O10' 800.986 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 OIL non-polymer . '(2S,3S)-2-hydroxy-3-methylpentanoic acid' ? 'C6 H12 O3' 132.158 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 YCM 'L-peptide linking' n 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' CYSTEINE-S-ACETAMIDE 'C5 H10 N2 O3 S' 178.209 # _exptl.entry_id 3NXN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;0.1 M Citrate, 0.2 M Sodium Phosphate, 30% (w/v) Ammonium Sulfate, 10% (v/v) DMSO, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2007-07-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Bent Ge(111) monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.90020 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.90020 # _reflns.entry_id 3NXN _reflns.observed_criterion_sigma_I 102.9 _reflns.observed_criterion_sigma_F 102.9 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.80 _reflns.number_obs 17520 _reflns.number_all ? _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.404 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.51 _reflns_shell.pdbx_redundancy 4.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3NXN _refine.ls_number_reflns_obs 16574 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 99.33 _refine.ls_R_factor_obs 0.19513 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19351 _refine.ls_R_factor_R_free 0.22511 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 885 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.949 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.B_iso_mean 20.292 _refine.aniso_B[1][1] 0.95 _refine.aniso_B[2][2] 0.11 _refine.aniso_B[3][3] -1.06 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.133 _refine.overall_SU_ML 0.091 _refine.overall_SU_B 5.822 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1543 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 76 _refine_hist.number_atoms_solvent 98 _refine_hist.number_atoms_total 1717 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.018 0.022 ? 1639 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1094 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.807 2.005 ? 2216 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.928 3.000 ? 2693 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.993 5.000 ? 199 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44.064 24.915 ? 59 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.452 15.000 ? 284 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.425 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.112 0.200 ? 255 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1735 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 275 'X-RAY DIFFRACTION' ? r_nbd_refined 0.210 0.200 ? 246 'X-RAY DIFFRACTION' ? r_nbd_other 0.206 0.200 ? 1101 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.178 0.200 ? 759 'X-RAY DIFFRACTION' ? r_nbtor_other 0.093 0.200 ? 896 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.126 0.200 ? 58 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.199 0.200 ? 10 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.168 0.200 ? 35 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.211 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.170 1.500 ? 1049 'X-RAY DIFFRACTION' ? r_mcbond_other 0.329 1.500 ? 429 'X-RAY DIFFRACTION' ? r_mcangle_it 1.834 2.000 ? 1655 'X-RAY DIFFRACTION' ? r_scbond_it 2.584 3.000 ? 659 'X-RAY DIFFRACTION' ? r_scangle_it 4.163 4.500 ? 558 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.803 _refine_ls_shell.d_res_low 1.850 _refine_ls_shell.number_reflns_R_work 1141 _refine_ls_shell.R_factor_R_work 0.198 _refine_ls_shell.percent_reflns_obs 94.82 _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NXN _struct.title ;X-ray structure of ester chemical analogue 'covalent dimer' [Ile50,O-Ile50']HIV-1 protease complexed with KVS-1 inhibitor ; _struct.pdbx_descriptor 'protease (E.C.3.4.23.16)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NXN _struct_keywords.pdbx_keywords 'hydrolase/hydrolase inhibitor' _struct_keywords.text 'beta-barrel, hydrolase-hydrolase inhibitor complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLY A 190 ? THR A 195 ? GLY A 190 THR A 195 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A GLU 35 C ? ? ? 1_555 A NLE 36 N ? ? A GLU 35 A NLE 36 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale both ? A NLE 36 C ? ? ? 1_555 A ASN 37 N ? ? A NLE 36 A ASN 37 1_555 ? ? ? ? ? ? ? 1.339 ? covale3 covale both ? A GLY 40 C ? ? ? 1_555 A YCM 41 N ? ? A GLY 40 A YCM 41 1_555 ? ? ? ? ? ? ? 1.337 ? covale4 covale both ? A YCM 41 C ? ? ? 1_555 A TRP 42 N ? ? A YCM 41 A TRP 42 1_555 ? ? ? ? ? ? ? 1.333 ? covale5 covale both ? A LYS 45 C ? ? ? 1_555 A NLE 46 N ? ? A LYS 45 A NLE 46 1_555 ? ? ? ? ? ? ? 1.333 ? covale6 covale both ? A NLE 46 C ? ? ? 1_555 A ILE 47 N ? ? A NLE 46 A ILE 47 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale both ? A ILE 66 C ? ? ? 1_555 A ABA 67 N ? ? A ILE 66 A ABA 67 1_555 ? ? ? ? ? ? ? 1.327 ? covale8 covale both ? A ABA 67 C ? ? ? 1_555 A GLY 68 N ? ? A ABA 67 A GLY 68 1_555 ? ? ? ? ? ? ? 1.322 ? covale9 covale both ? A GLY 94 C ? ? ? 1_555 A ABA 95 N ? ? A GLY 94 A ABA 95 1_555 ? ? ? ? ? ? ? 1.344 ? covale10 covale both ? A ABA 95 C ? ? ? 1_555 A THR 96 N ? ? A ABA 95 A THR 96 1_555 ? ? ? ? ? ? ? 1.322 ? covale11 covale both ? A PHE 99 C ? ? ? 1_555 A YCM 100 N ? ? A PHE 99 A YCM 100 1_555 ? ? ? ? ? ? ? 1.342 ? covale12 covale both ? A YCM 100 C ? ? ? 1_555 A GLY 101 N ? ? A YCM 100 A GLY 101 1_555 ? ? ? ? ? ? ? 1.328 ? covale13 covale both ? A GLU 139 C ? ? ? 1_555 A NLE 140 N ? ? A GLU 139 A NLE 140 1_555 ? ? ? ? ? ? ? 1.327 ? covale14 covale both ? A NLE 140 C ? ? ? 1_555 A ASN 141 N ? ? A NLE 140 A ASN 141 1_555 ? ? ? ? ? ? ? 1.335 ? covale15 covale both ? A GLY 144 C ? ? ? 1_555 A YCM 145 N ? ? A GLY 144 A YCM 145 1_555 ? ? ? ? ? ? ? 1.324 ? covale16 covale both ? A YCM 145 C ? ? ? 1_555 A TRP 146 N ? ? A YCM 145 A TRP 146 1_555 ? ? ? ? ? ? ? 1.308 ? covale17 covale both ? A LYS 149 C ? ? ? 1_555 A NLE 150 N ? ? A LYS 149 A NLE 150 1_555 ? ? ? ? ? ? ? 1.318 ? covale18 covale both ? A NLE 150 C ? ? ? 1_555 A ILE 151 N ? ? A NLE 150 A ILE 151 1_555 ? ? ? ? ? ? ? 1.340 ? covale19 covale both ? A GLY 153 C ? ? ? 1_555 A OIL 154 O1 ? ? A GLY 153 A OIL 154 1_555 ? ? ? ? ? ? ? 1.268 ? covale20 covale both ? A OIL 154 C ? ? ? 1_555 A GLY 155 N ? ? A OIL 154 A GLY 155 1_555 ? ? ? ? ? ? ? 1.327 ? covale21 covale both ? A ILE 170 C ? ? ? 1_555 A ABA 171 N ? ? A ILE 170 A ABA 171 1_555 ? ? ? ? ? ? ? 1.323 ? covale22 covale both ? A ABA 171 C ? ? ? 1_555 A GLY 172 N ? ? A ABA 171 A GLY 172 1_555 ? ? ? ? ? ? ? 1.313 ? covale23 covale both ? A GLY 198 C ? ? ? 1_555 A ABA 199 N ? ? A GLY 198 A ABA 199 1_555 ? ? ? ? ? ? ? 1.326 ? covale24 covale both ? A ABA 199 C ? ? ? 1_555 A THR 200 N ? ? A ABA 199 A THR 200 1_555 ? ? ? ? ? ? ? 1.335 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 8 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 ABA A 199 ? ASN A 202 ? ABA A 199 ASN A 202 A 3 THR A 96 ? PHE A 99 ? THR A 96 PHE A 99 A 4 GLN A 106 ? ILE A 107 ? GLN A 106 ILE A 107 B 1 TRP A 42 ? GLY A 49 ? TRP A 42 GLY A 49 B 2 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 3 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 4 VAL A 32 ? ILE A 33 ? VAL A 32 ILE A 33 B 5 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 6 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 7 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 8 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS A 147 ? GLY A 152 ? LYS A 147 GLY A 152 C 2 GLY A 155 ? ILE A 170 ? GLY A 155 ILE A 170 C 3 HIS A 173 ? VAL A 181 ? HIS A 173 VAL A 181 C 4 VAL A 136 ? ILE A 137 ? VAL A 136 ILE A 137 C 5 ILE A 188 ? ILE A 188 ? ILE A 188 ILE A 188 C 6 GLN A 122 ? LEU A 127 ? GLN A 122 LEU A 127 C 7 LEU A 114 ? ILE A 119 ? LEU A 114 ILE A 119 C 8 GLY A 155 ? ILE A 170 ? GLY A 155 ILE A 170 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU A 201 ? O LEU A 201 A 2 3 O ASN A 202 ? O ASN A 202 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE A 107 ? O ILE A 107 B 1 2 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 2 3 N ILE A 66 ? N ILE A 66 O HIS A 69 ? O HIS A 69 B 3 4 O LEU A 76 ? O LEU A 76 N ILE A 33 ? N ILE A 33 B 4 5 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 5 6 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 6 7 O GLN A 18 ? O GLN A 18 N ILE A 15 ? N ILE A 15 B 7 8 N ARG A 14 ? N ARG A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS A 147 ? N LYS A 147 O GLN A 162 ? O GLN A 162 C 2 3 N TYR A 163 ? N TYR A 163 O VAL A 179 ? O VAL A 179 C 3 4 O LEU A 180 ? O LEU A 180 N ILE A 137 ? N ILE A 137 C 4 5 N VAL A 136 ? N VAL A 136 O ILE A 188 ? O ILE A 188 C 5 6 O ILE A 188 ? O ILE A 188 N LEU A 127 ? N LEU A 127 C 6 7 O LYS A 124 ? O LYS A 124 N ILE A 117 ? N ILE A 117 C 7 8 N ARG A 118 ? N ARG A 118 O GLU A 169 ? O GLU A 169 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 23 'BINDING SITE FOR RESIDUE KVS A 204' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 501' AC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 502' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 503' AC5 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 23 ASP A 25 ? ASP A 25 . ? 1_555 ? 3 AC1 23 GLY A 27 ? GLY A 27 . ? 1_555 ? 4 AC1 23 ALA A 28 ? ALA A 28 . ? 1_555 ? 5 AC1 23 ASP A 29 ? ASP A 29 . ? 1_555 ? 6 AC1 23 GLY A 48 ? GLY A 48 . ? 1_555 ? 7 AC1 23 GLY A 49 ? GLY A 49 . ? 1_555 ? 8 AC1 23 ILE A 50 ? ILE A 50 . ? 1_555 ? 9 AC1 23 VAL A 82 ? VAL A 82 . ? 1_555 ? 10 AC1 23 ARG A 112 ? ARG A 112 . ? 1_555 ? 11 AC1 23 ASP A 129 ? ASP A 129 . ? 1_555 ? 12 AC1 23 GLY A 131 ? GLY A 131 . ? 1_555 ? 13 AC1 23 ALA A 132 ? ALA A 132 . ? 1_555 ? 14 AC1 23 ASP A 133 ? ASP A 133 . ? 1_555 ? 15 AC1 23 ASP A 134 ? ASP A 134 . ? 1_555 ? 16 AC1 23 ILE A 151 ? ILE A 151 . ? 1_555 ? 17 AC1 23 GLY A 152 ? GLY A 152 . ? 1_555 ? 18 AC1 23 GLY A 153 ? GLY A 153 . ? 1_555 ? 19 AC1 23 VAL A 186 ? VAL A 186 . ? 1_555 ? 20 AC1 23 HOH G . ? HOH A 301 . ? 1_555 ? 21 AC1 23 HOH G . ? HOH A 303 . ? 1_555 ? 22 AC1 23 HOH G . ? HOH A 333 . ? 1_555 ? 23 AC1 23 HOH G . ? HOH A 334 . ? 1_555 ? 24 AC2 5 LEU A 114 ? LEU A 114 . ? 1_555 ? 25 AC2 5 GLU A 125 ? GLU A 125 . ? 1_555 ? 26 AC2 5 ALA A 126 ? ALA A 126 . ? 1_555 ? 27 AC2 5 VAL A 186 ? VAL A 186 . ? 1_555 ? 28 AC2 5 ASN A 187 ? ASN A 187 . ? 1_555 ? 29 AC3 7 ARG A 14 ? ARG A 14 . ? 1_555 ? 30 AC3 7 GLY A 16 ? GLY A 16 . ? 1_555 ? 31 AC3 7 GLY A 17 ? GLY A 17 . ? 1_555 ? 32 AC3 7 ARG A 118 ? ARG A 118 . ? 1_655 ? 33 AC3 7 HOH G . ? HOH A 323 . ? 1_555 ? 34 AC3 7 HOH G . ? HOH A 338 . ? 1_555 ? 35 AC3 7 HOH G . ? HOH A 382 . ? 1_555 ? 36 AC4 3 LYS A 45 ? LYS A 45 . ? 1_555 ? 37 AC4 3 NLE A 46 ? NLE A 46 . ? 1_555 ? 38 AC4 3 HOH G . ? HOH A 313 . ? 3_545 ? 39 AC5 8 THR A 116 ? THR A 116 . ? 1_555 ? 40 AC5 8 ILE A 117 ? ILE A 117 . ? 1_555 ? 41 AC5 8 ARG A 118 ? ARG A 118 . ? 1_555 ? 42 AC5 8 TRP A 146 ? TRP A 146 . ? 2_455 ? 43 AC5 8 GLU A 169 ? GLU A 169 . ? 1_555 ? 44 AC5 8 ILE A 170 ? ILE A 170 . ? 1_555 ? 45 AC5 8 ABA A 171 ? ABA A 171 . ? 1_555 ? 46 AC5 8 GLY A 172 ? GLY A 172 . ? 1_555 ? # _database_PDB_matrix.entry_id 3NXN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3NXN _atom_sites.fract_transf_matrix[1][1] 0.019279 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017348 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016223 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 NLE 36 36 36 NLE NLE A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 YCM 41 41 41 YCM YCM A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 NLE 46 46 46 NLE NLE A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 ABA 67 67 67 ABA ABA A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 ABA 95 95 95 ABA ABA A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n A 1 100 YCM 100 100 100 YCM YCM A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 TRP 110 110 110 TRP TRP A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 LEU 114 114 114 LEU LEU A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 THR 116 116 116 THR THR A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 ARG 118 118 118 ARG ARG A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 GLY 120 120 120 GLY GLY A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 GLN 122 122 122 GLN GLN A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 GLY 131 131 131 GLY GLY A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 ASP 133 133 133 ASP ASP A . n A 1 134 ASP 134 134 134 ASP ASP A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 NLE 140 140 140 NLE NLE A . n A 1 141 ASN 141 141 141 ASN ASN A . n A 1 142 LEU 142 142 142 LEU LEU A . n A 1 143 PRO 143 143 143 PRO PRO A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 YCM 145 145 145 YCM YCM A . n A 1 146 TRP 146 146 146 TRP TRP A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 NLE 150 150 150 NLE NLE A . n A 1 151 ILE 151 151 151 ILE ILE A . n A 1 152 GLY 152 152 152 GLY GLY A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 OIL 154 154 154 OIL OIL A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 PHE 157 157 157 PHE PHE A . n A 1 158 ILE 158 158 158 ILE ILE A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 VAL 160 160 160 VAL VAL A . n A 1 161 ARG 161 161 161 ARG ARG A . n A 1 162 GLN 162 162 162 GLN GLN A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 GLN 165 165 165 GLN GLN A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 VAL 168 168 168 VAL VAL A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 ABA 171 171 171 ABA ABA A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 HIS 173 173 173 HIS HIS A . n A 1 174 LYS 174 174 174 LYS LYS A . n A 1 175 ALA 175 175 175 ALA ALA A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 THR 178 178 178 THR THR A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 VAL 181 181 181 VAL VAL A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 PRO 183 183 183 PRO PRO A . n A 1 184 THR 184 184 184 THR THR A . n A 1 185 PRO 185 185 185 PRO PRO A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 ASN 187 187 187 ASN ASN A . n A 1 188 ILE 188 188 188 ILE ILE A . n A 1 189 ILE 189 189 189 ILE ILE A . n A 1 190 GLY 190 190 190 GLY GLY A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 ASN 192 192 192 ASN ASN A . n A 1 193 LEU 193 193 193 LEU LEU A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 GLN 196 196 196 GLN GLN A . n A 1 197 ILE 197 197 197 ILE ILE A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 ABA 199 199 199 ABA ABA A . n A 1 200 THR 200 200 200 THR THR A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 ASN 202 202 202 ASN ASN A . n A 1 203 PHE 203 203 203 PHE PHE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KVS 1 204 204 KVS KVS A . C 3 SO4 1 501 501 SO4 SO4 A . D 3 SO4 1 502 502 SO4 SO4 A . E 3 SO4 1 503 503 SO4 SO4 A . F 3 SO4 1 504 504 SO4 SO4 A . G 4 HOH 1 205 93 HOH HOH A . G 4 HOH 2 301 301 HOH HOH A . G 4 HOH 3 302 302 HOH HOH A . G 4 HOH 4 303 303 HOH HOH A . G 4 HOH 5 304 304 HOH HOH A . G 4 HOH 6 305 305 HOH HOH A . G 4 HOH 7 306 306 HOH HOH A . G 4 HOH 8 307 307 HOH HOH A . G 4 HOH 9 308 308 HOH HOH A . G 4 HOH 10 309 309 HOH HOH A . G 4 HOH 11 310 310 HOH HOH A . G 4 HOH 12 311 311 HOH HOH A . G 4 HOH 13 312 312 HOH HOH A . G 4 HOH 14 313 313 HOH HOH A . G 4 HOH 15 314 314 HOH HOH A . G 4 HOH 16 315 315 HOH HOH A . G 4 HOH 17 316 316 HOH HOH A . G 4 HOH 18 317 317 HOH HOH A . G 4 HOH 19 318 318 HOH HOH A . G 4 HOH 20 319 319 HOH HOH A . G 4 HOH 21 320 320 HOH HOH A . G 4 HOH 22 321 321 HOH HOH A . G 4 HOH 23 322 322 HOH HOH A . G 4 HOH 24 323 323 HOH HOH A . G 4 HOH 25 324 324 HOH HOH A . G 4 HOH 26 325 325 HOH HOH A . G 4 HOH 27 326 326 HOH HOH A . G 4 HOH 28 327 327 HOH HOH A . G 4 HOH 29 328 328 HOH HOH A . G 4 HOH 30 329 329 HOH HOH A . G 4 HOH 31 330 330 HOH HOH A . G 4 HOH 32 331 331 HOH HOH A . G 4 HOH 33 332 332 HOH HOH A . G 4 HOH 34 333 333 HOH HOH A . G 4 HOH 35 334 334 HOH HOH A . G 4 HOH 36 335 335 HOH HOH A . G 4 HOH 37 336 336 HOH HOH A . G 4 HOH 38 337 337 HOH HOH A . G 4 HOH 39 338 338 HOH HOH A . G 4 HOH 40 339 339 HOH HOH A . G 4 HOH 41 340 340 HOH HOH A . G 4 HOH 42 341 341 HOH HOH A . G 4 HOH 43 342 342 HOH HOH A . G 4 HOH 44 343 343 HOH HOH A . G 4 HOH 45 344 344 HOH HOH A . G 4 HOH 46 345 345 HOH HOH A . G 4 HOH 47 346 346 HOH HOH A . G 4 HOH 48 347 347 HOH HOH A . G 4 HOH 49 348 348 HOH HOH A . G 4 HOH 50 349 349 HOH HOH A . G 4 HOH 51 350 350 HOH HOH A . G 4 HOH 52 351 351 HOH HOH A . G 4 HOH 53 352 352 HOH HOH A . G 4 HOH 54 353 353 HOH HOH A . G 4 HOH 55 354 354 HOH HOH A . G 4 HOH 56 355 355 HOH HOH A . G 4 HOH 57 356 356 HOH HOH A . G 4 HOH 58 357 357 HOH HOH A . G 4 HOH 59 358 358 HOH HOH A . G 4 HOH 60 359 359 HOH HOH A . G 4 HOH 61 360 360 HOH HOH A . G 4 HOH 62 361 361 HOH HOH A . G 4 HOH 63 362 362 HOH HOH A . G 4 HOH 64 363 363 HOH HOH A . G 4 HOH 65 364 364 HOH HOH A . G 4 HOH 66 365 365 HOH HOH A . G 4 HOH 67 366 366 HOH HOH A . G 4 HOH 68 367 367 HOH HOH A . G 4 HOH 69 368 368 HOH HOH A . G 4 HOH 70 369 369 HOH HOH A . G 4 HOH 71 370 370 HOH HOH A . G 4 HOH 72 371 371 HOH HOH A . G 4 HOH 73 372 372 HOH HOH A . G 4 HOH 74 373 373 HOH HOH A . G 4 HOH 75 374 374 HOH HOH A . G 4 HOH 76 375 375 HOH HOH A . G 4 HOH 77 376 376 HOH HOH A . G 4 HOH 78 377 377 HOH HOH A . G 4 HOH 79 378 378 HOH HOH A . G 4 HOH 80 379 379 HOH HOH A . G 4 HOH 81 380 380 HOH HOH A . G 4 HOH 82 381 381 HOH HOH A . G 4 HOH 83 382 382 HOH HOH A . G 4 HOH 84 383 383 HOH HOH A . G 4 HOH 85 384 384 HOH HOH A . G 4 HOH 86 385 385 HOH HOH A . G 4 HOH 87 386 386 HOH HOH A . G 4 HOH 88 387 387 HOH HOH A . G 4 HOH 89 388 388 HOH HOH A . G 4 HOH 90 389 389 HOH HOH A . G 4 HOH 91 390 390 HOH HOH A . G 4 HOH 92 391 391 HOH HOH A . G 4 HOH 93 392 392 HOH HOH A . G 4 HOH 94 393 393 HOH HOH A . G 4 HOH 95 394 394 HOH HOH A . G 4 HOH 96 395 395 HOH HOH A . G 4 HOH 97 396 396 HOH HOH A . G 4 HOH 98 397 397 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_001037 _pdbx_molecule_features.name ;N~2~-[(2R,5S)-5-({(2S,3S)-2-[(N-ACETYL-L-THREONYL)AMINO]-3-METHYLPENT-4-ENOYL}AMINO)-2-BUTYL-4,4-DIHYDROXYNONANOYL]-L-GLUTAMINYL-L-ARGININAMIDE ; _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_001037 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A NLE 36 A NLE 36 ? LEU NORLEUCINE 2 A YCM 41 A YCM 41 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' 3 A NLE 46 A NLE 46 ? LEU NORLEUCINE 4 A ABA 67 A ABA 67 ? ALA 'ALPHA-AMINOBUTYRIC ACID' 5 A ABA 95 A ABA 95 ? ALA 'ALPHA-AMINOBUTYRIC ACID' 6 A YCM 100 A YCM 100 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' 7 A NLE 140 A NLE 140 ? LEU NORLEUCINE 8 A YCM 145 A YCM 145 ? CYS 'S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE' 9 A NLE 150 A NLE 150 ? LEU NORLEUCINE 10 A ABA 171 A ABA 171 ? ALA 'ALPHA-AMINOBUTYRIC ACID' 11 A ABA 199 A ABA 199 ? ALA 'ALPHA-AMINOBUTYRIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-11-02 2 'Structure model' 1 1 2012-01-11 3 'Structure model' 1 2 2012-12-12 4 'Structure model' 2 0 2019-07-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Non-polymer description' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.formula' 2 4 'Structure model' '_chem_comp.formula_weight' 3 4 'Structure model' '_chem_comp.type' 4 4 'Structure model' '_entity.formula_weight' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 5.0436 1.1682 18.3173 -0.0379 -0.0560 -0.0504 -0.0137 -0.0032 -0.0018 1.4158 0.7918 0.8416 -0.3106 0.5847 0.1527 -0.0357 0.0712 0.0111 -0.0195 0.0522 -0.0021 -0.0241 0.0687 -0.0164 'X-RAY DIFFRACTION' 2 ? refined 5.4503 -0.8046 13.1496 -0.0330 -0.0058 -0.0353 -0.0185 0.0207 -0.0185 16.9913 12.9251 25.8384 -13.2512 18.4757 -15.9547 0.1334 0.2966 0.0612 -0.6249 -0.4069 -0.2749 0.4377 0.6479 0.2735 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 202 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 204 ? ? A 204 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 MOLREP phasing . ? 2 REFMAC refinement 5.2.0019 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;N~2~-[(2R,5S)-5-({(2S,3S)-2-[(N-acetyl-L-threonyl)amino]-3-methylpent-4-enoyl}amino)-2-butyl-4,4-dihydroxynonanoyl]-L-glutaminyl-L-argininamide ; KVS 3 'SULFATE ION' SO4 4 water HOH #