HEADER TRANSPORT PROTEIN 14-JUL-10 3NXS TITLE CRYSTAL STRUCTURE OF LAO/AO TRANSPORT SYSTEM FROM MYCOBACTERIUM TITLE 2 SMEGMATIS BOUND TO GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAO/AO TRANSPORT SYSTEM ATPASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_3160; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: AVA0421 KEYWDS SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, KEYWDS 2 MYCOBACTERIUM, PATHOGENIC BACTERIUM, TUBERCULOSIS, METHYLMALONIC KEYWDS 3 ACIDURIA, ORTHOLOG, RAS-LIKE GTPASE SUPERFAMILY, G-DOMAIN, ARGININE, KEYWDS 4 ORNITHINE, TRANSPORT SYSTEM, GTPASE, MISLABELED AS AN ATPASE, KEYWDS 5 METALLOCHAPERONE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 06-SEP-23 3NXS 1 REMARK SEQADV REVDAT 3 03-JUN-15 3NXS 1 JRNL REVDAT 2 22-APR-15 3NXS 1 JRNL VERSN REVDAT 1 28-JUL-10 3NXS 0 JRNL AUTH T.E.EDWARDS,L.BAUGH,J.BULLEN,R.O.BAYDO,P.WITTE,K.THOMPKINS, JRNL AUTH 2 I.Q.PHAN,J.ABENDROTH,M.C.CLIFTON,B.SANKARAN,W.C.VAN VOORHIS, JRNL AUTH 3 P.J.MYLER,B.L.STAKER,C.GRUNDNER,D.D.LORIMER JRNL TITL CRYSTAL STRUCTURES OF MYCOBACTERIAL MEAB AND MMAA-LIKE JRNL TITL 2 GTPASES JRNL REF J.STRUCT.FUNCT.GENOM. V. 16 91 2015 JRNL REFN ISSN 1345-711X JRNL PMID 25832174 JRNL DOI 10.1007/S10969-015-9197-2 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, REMARK 1 AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, REMARK 1 AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, REMARK 1 AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, REMARK 1 AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, REMARK 1 AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, REMARK 1 AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER REMARK 1 TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG REMARK 1 TITL 2 TARGETS REMARK 1 REF TUBERCULOSIS (EDINB) V. 95 142 2015 REMARK 1 REFN ISSN 1472-9792 REMARK 1 PMID 25613812 REMARK 1 DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 18582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2283 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.13000 REMARK 3 B22 (A**2) : 1.18000 REMARK 3 B33 (A**2) : 1.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.140 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.700 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2354 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3212 ; 1.501 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ; 5.956 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;36.045 ;22.959 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 377 ;15.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.532 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1760 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1519 ; 0.931 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2425 ; 1.757 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 835 ; 2.658 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 786 ; 4.418 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 27.8404 10.5032 1.4216 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.1031 REMARK 3 T33: 0.1238 T12: 0.0289 REMARK 3 T13: -0.0361 T23: -0.0871 REMARK 3 L TENSOR REMARK 3 L11: 0.5643 L22: 0.4572 REMARK 3 L33: 0.0889 L12: -0.1544 REMARK 3 L13: -0.1166 L23: -0.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: -0.0874 S13: 0.1135 REMARK 3 S21: -0.0639 S22: -0.0365 S23: 0.1024 REMARK 3 S31: -0.0343 S32: -0.0153 S33: 0.0193 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3NXS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060412. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18658 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 8.700 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: 3MD0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ CONDITION F6, 0.1% BICINE PH REMARK 280 9.0, 10% MPD AS CRYSTALLANT, 28.66 MG/ML PROTEIN, CRYSTAL REMARK 280 TRACKING ID 215415F6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.31500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.31500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.63000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 92 REMARK 465 SER A 93 REMARK 465 SER A 94 REMARK 465 THR A 95 REMARK 465 ARG A 96 REMARK 465 THR A 97 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 SER A 100 REMARK 465 ILE A 101 REMARK 465 LEU A 102 REMARK 465 GLY A 103 REMARK 465 ASP A 104 REMARK 465 LYS A 105 REMARK 465 THR A 106 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 ARG A 33 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 THR A 124 OG1 CG2 REMARK 470 THR A 127 OG1 CG2 REMARK 470 VAL A 155 CG1 CG2 REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 211 CG CD CE NZ REMARK 470 ARG A 227 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 280 CB SER A 280 OG -0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 108 74.53 -115.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 327 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MD0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ARGININE/ORNITHINE TRANSPORT SYSTEM ATPASE REMARK 900 FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO GDP (A RAS-LIKE GTPASE REMARK 900 SUPERFAMILY PROTEIN) REMARK 900 RELATED ID: MYSMA.00200.B RELATED DB: TARGETDB DBREF 3NXS A 2 326 UNP A0QX37 A0QX37_MYCS2 1 325 SEQADV 3NXS GLY A -2 UNP A0QX37 EXPRESSION TAG SEQADV 3NXS PRO A -1 UNP A0QX37 EXPRESSION TAG SEQADV 3NXS GLY A 0 UNP A0QX37 EXPRESSION TAG SEQADV 3NXS SER A 1 UNP A0QX37 EXPRESSION TAG SEQRES 1 A 329 GLY PRO GLY SER MET LYS ALA VAL ASN VAL HIS GLU LEU SEQRES 2 A 329 ALA GLN SER ILE ARG ASP GLY ASP ARG SER ALA LEU ALA SEQRES 3 A 329 ARG ALA ILE THR LEU VAL GLU SER THR ARG ALA ASP HIS SEQRES 4 A 329 ARG GLU GLN ALA GLN GLN LEU LEU LEU ASP LEU MET PRO SEQRES 5 A 329 GLU ALA GLY SER ALA MET HIS VAL GLY ILE THR GLY VAL SEQRES 6 A 329 PRO GLY VAL GLY LYS SER THR THR ILE GLU ALA LEU GLY SEQRES 7 A 329 MET HIS LEU ILE GLU ALA GLY HIS ARG VAL ALA VAL LEU SEQRES 8 A 329 ALA VAL ASP PRO SER SER THR ARG THR GLY GLY SER ILE SEQRES 9 A 329 LEU GLY ASP LYS THR ARG MET ALA ARG LEU ALA VAL HIS SEQRES 10 A 329 PRO ASP ALA TYR ILE ARG PRO SER PRO THR SER GLY THR SEQRES 11 A 329 LEU GLY GLY VAL ALA LYS ALA THR ARG GLU THR ILE VAL SEQRES 12 A 329 LEU LEU GLU ALA ALA GLY TYR ASP VAL ILE LEU VAL GLU SEQRES 13 A 329 THR VAL GLY VAL GLY GLN SER GLU VAL THR VAL ALA GLY SEQRES 14 A 329 MET VAL ASP THR PHE VAL PHE LEU THR LEU ALA ARG THR SEQRES 15 A 329 GLY ASP GLN LEU GLN GLY ILE LYS LYS GLY VAL LEU GLU SEQRES 16 A 329 LEU ALA ASP VAL ILE VAL VAL ASN LYS ALA ASP GLY GLU SEQRES 17 A 329 HIS ALA VAL GLU ALA LYS ALA ALA ALA ARG GLU LEU SER SEQRES 18 A 329 GLY ALA ILE ARG LEU ILE TYR PRO ARG GLU SER LEU TRP SEQRES 19 A 329 ARG PRO PRO VAL LEU THR MET SER ALA VAL GLU GLY THR SEQRES 20 A 329 GLY LEU PRO GLU LEU TRP GLU THR VAL LEU ARG HIS ARG SEQRES 21 A 329 GLU VAL LEU GLU GLU ALA GLY GLU PHE GLU ALA ARG ARG SEQRES 22 A 329 ARG THR GLN GLN VAL GLU TRP THR TRP SER MET VAL ARG SEQRES 23 A 329 ASP ALA VAL LEU ASP ARG VAL MET ASN HIS PRO GLU VAL SEQRES 24 A 329 ARG ARG ILE ARG ASP ASP VAL GLU GLN ARG VAL ARG LEU SEQRES 25 A 329 GLY GLU LEU THR PRO ALA LEU ALA ALA GLN GLU ILE LEU SEQRES 26 A 329 ASP ALA ALA GLN HET GDP A 327 28 HET CL A 328 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM CL CHLORIDE ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 CL CL 1- FORMUL 4 HOH *90(H2 O) HELIX 1 1 ASN A 6 GLY A 17 1 12 HELIX 2 2 ASP A 18 SER A 31 1 14 HELIX 3 3 ARG A 33 LEU A 47 1 15 HELIX 4 4 GLY A 66 ALA A 81 1 16 HELIX 5 5 MET A 108 HIS A 114 1 7 HELIX 6 6 THR A 127 ALA A 145 1 19 HELIX 7 7 GLN A 159 GLY A 166 1 8 HELIX 8 8 VAL A 190 ALA A 194 5 5 HELIX 9 9 ASP A 203 GLU A 205 5 3 HELIX 10 10 HIS A 206 TYR A 225 1 20 HELIX 11 11 GLY A 245 ALA A 263 1 19 HELIX 12 12 GLU A 265 ASN A 292 1 28 HELIX 13 13 HIS A 293 LEU A 309 1 17 HELIX 14 14 THR A 313 ALA A 325 1 13 SHEET 1 A 6 ALA A 117 ARG A 120 0 SHEET 2 A 6 VAL A 85 ALA A 89 1 N VAL A 87 O TYR A 118 SHEET 3 A 6 VAL A 149 THR A 154 1 O LEU A 151 N ALA A 86 SHEET 4 A 6 MET A 55 THR A 60 1 N VAL A 57 O ILE A 150 SHEET 5 A 6 THR A 170 ALA A 177 1 O VAL A 172 N GLY A 58 SHEET 6 A 6 LEU A 183 GLN A 184 -1 O GLN A 184 N LEU A 176 SHEET 1 B 7 ALA A 117 ARG A 120 0 SHEET 2 B 7 VAL A 85 ALA A 89 1 N VAL A 87 O TYR A 118 SHEET 3 B 7 VAL A 149 THR A 154 1 O LEU A 151 N ALA A 86 SHEET 4 B 7 MET A 55 THR A 60 1 N VAL A 57 O ILE A 150 SHEET 5 B 7 THR A 170 ALA A 177 1 O VAL A 172 N GLY A 58 SHEET 6 B 7 VAL A 196 VAL A 199 1 O VAL A 198 N THR A 175 SHEET 7 B 7 VAL A 235 THR A 237 1 O LEU A 236 N VAL A 199 SITE 1 AC1 14 GLY A 64 VAL A 65 GLY A 66 LYS A 67 SITE 2 AC1 14 SER A 68 THR A 69 ASN A 200 LYS A 201 SITE 3 AC1 14 ASP A 203 SER A 239 ALA A 240 VAL A 241 SITE 4 AC1 14 HOH A 358 HOH A 410 CRYST1 78.630 91.460 57.470 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012718 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010934 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017400 0.00000