HEADER TRANSFERASE 14-JUL-10 3NY5 TITLE CRYSTAL STRUCTURE OF THE RBD DOMAIN OF SERINE/THREONINE-PROTEIN KINASE TITLE 2 B-RAF FROM HOMO SAPIENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET HR4694F COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE B-RAF; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RBD DOMAIN RESIDUES 153-237; COMPND 5 SYNONYM: PROTO-ONCOGENE B-RAF, P94, V-RAF MURINE SARCOMA VIRAL COMPND 6 ONCOGENE HOMOLOG B1; COMPND 7 EC: 2.7.11.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRAF, BRAF1, RAFB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS NESG, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.VOROBIEV,M.SU,J.SEETHARAMAN,P.PATEL,R.XIAO,C.CICCOSANTI,R.SHASTRY, AUTHOR 2 J.K.EVERETT,R.NAIR,T.B.ACTON,B.ROST,G.T.MONTELIONE,J.F.HUNT,L.TONG, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 25-OCT-17 3NY5 1 REMARK REVDAT 2 22-FEB-12 3NY5 1 VERSN KEYWDS REVDAT 1 28-JUL-10 3NY5 0 JRNL AUTH S.VOROBIEV,M.SU,J.SEETHARAMAN,P.PATEL,R.XIAO,C.CICCOSANTI, JRNL AUTH 2 R.SHASTRY,J.K.EVERETT,R.NAIR,T.B.ACTON,B.ROST, JRNL AUTH 3 G.T.MONTELIONE,J.F.HUNT,L.TONG JRNL TITL CRYSTAL STRUCTURE OF THE RBD DOMAIN OF JRNL TITL 2 SERINE/THREONINE-PROTEIN KINASE B-RAF FROM HOMO SAPIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.230 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 41488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 2132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6080 - 4.9120 0.96 2574 127 0.2540 0.2830 REMARK 3 2 4.9120 - 3.9000 1.00 2624 143 0.1800 0.2310 REMARK 3 3 3.9000 - 3.4070 1.00 2671 126 0.1830 0.2360 REMARK 3 4 3.4070 - 3.0960 1.00 2605 167 0.1850 0.2730 REMARK 3 5 3.0960 - 2.8740 1.00 2648 151 0.2040 0.2530 REMARK 3 6 2.8740 - 2.7050 1.00 2661 136 0.2110 0.2900 REMARK 3 7 2.7050 - 2.5690 1.00 2606 169 0.2130 0.2890 REMARK 3 8 2.5690 - 2.4570 1.00 2635 156 0.2070 0.2860 REMARK 3 9 2.4570 - 2.3630 1.00 2635 144 0.2130 0.2750 REMARK 3 10 2.3630 - 2.2810 1.00 2685 126 0.1920 0.2820 REMARK 3 11 2.2810 - 2.2100 1.00 2622 133 0.2020 0.2320 REMARK 3 12 2.2100 - 2.1470 1.00 2652 155 0.1860 0.2950 REMARK 3 13 2.1470 - 2.0900 1.00 2625 121 0.2020 0.2830 REMARK 3 14 2.0900 - 2.0390 1.00 2691 150 0.1950 0.2450 REMARK 3 15 2.0390 - 1.9930 0.93 2422 128 0.1870 0.2500 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 60.59 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.19700 REMARK 3 B22 (A**2) : -3.22800 REMARK 3 B33 (A**2) : 9.42500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 2629 REMARK 3 ANGLE : 1.521 3569 REMARK 3 CHIRALITY : 0.104 423 REMARK 3 PLANARITY : 0.007 446 REMARK 3 DIHEDRAL : 15.316 1007 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 2.5554 44.4969 60.2131 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.0482 REMARK 3 T33: 0.0355 T12: 0.0003 REMARK 3 T13: 0.0127 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.4972 L22: 0.9762 REMARK 3 L33: 0.6417 L12: -0.1765 REMARK 3 L13: 0.2385 L23: -0.1284 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0000 S13: 0.0470 REMARK 3 S21: 0.0005 S22: 0.0002 S23: 0.0856 REMARK 3 S31: -0.0805 S32: 0.0268 S33: 0.0014 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 14.9142 25.1889 60.1907 REMARK 3 T TENSOR REMARK 3 T11: 0.0584 T22: 0.0574 REMARK 3 T33: 0.0619 T12: -0.0113 REMARK 3 T13: -0.0214 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.9312 L22: 0.8724 REMARK 3 L33: 0.6226 L12: -0.4140 REMARK 3 L13: -0.0397 L23: 0.1676 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0007 S13: -0.1125 REMARK 3 S21: 0.0183 S22: 0.0019 S23: -0.0718 REMARK 3 S31: 0.0352 S32: -0.0401 S33: -0.0182 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 4.3816 63.6584 82.4547 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0874 REMARK 3 T33: 0.1225 T12: -0.0104 REMARK 3 T13: -0.0101 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.7595 L22: 0.8146 REMARK 3 L33: 1.0578 L12: 0.4928 REMARK 3 L13: 0.0826 L23: -0.0808 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: 0.0718 S13: 0.2071 REMARK 3 S21: 0.0064 S22: -0.0389 S23: 0.3286 REMARK 3 S31: 0.0525 S32: -0.0226 S33: 0.0463 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 23.8530 48.1416 88.5362 REMARK 3 T TENSOR REMARK 3 T11: 0.0870 T22: 0.1081 REMARK 3 T33: 0.0840 T12: 0.0029 REMARK 3 T13: 0.0121 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.4777 L22: 0.8160 REMARK 3 L33: 0.6911 L12: -0.3333 REMARK 3 L13: 0.1604 L23: -0.0492 REMARK 3 S TENSOR REMARK 3 S11: -0.0680 S12: -0.0073 S13: -0.0460 REMARK 3 S21: 0.0594 S22: -0.0299 S23: 0.1502 REMARK 3 S31: -0.0602 S32: 0.0727 S33: 0.0784 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97903 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.19900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 2000, 0.1M BIS-TRIS, PH 6.5, REMARK 280 MICROBATCH UNDER PARAFFIN OIL, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.90250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.30350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.70900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.30350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.90250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.70900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER ACCORDING TO AGGREGATION SCREENING REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 39.80500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 34.70900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 171.91050 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 142 REMARK 465 GLY A 143 REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 SER A 150 REMARK 465 ASP A 202 REMARK 465 GLY A 203 REMARK 465 GLU A 204 REMARK 465 THR A 234 REMARK 465 HIS A 235 REMARK 465 ASN A 236 REMARK 465 PHE A 237 REMARK 465 MSE B 142 REMARK 465 GLY B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 ASP B 202 REMARK 465 GLY B 203 REMARK 465 ASN B 236 REMARK 465 PHE B 237 REMARK 465 MSE C 142 REMARK 465 GLY C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 HIS C 146 REMARK 465 HIS C 147 REMARK 465 HIS C 148 REMARK 465 HIS C 149 REMARK 465 SER C 150 REMARK 465 HIS C 151 REMARK 465 ASP C 202 REMARK 465 GLY C 203 REMARK 465 GLU C 204 REMARK 465 ASN C 236 REMARK 465 PHE C 237 REMARK 465 MSE D 142 REMARK 465 GLY D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 SER D 150 REMARK 465 GLN D 201 REMARK 465 ASP D 202 REMARK 465 GLY D 203 REMARK 465 GLU D 204 REMARK 465 THR D 233 REMARK 465 THR D 234 REMARK 465 HIS D 235 REMARK 465 ASN D 236 REMARK 465 PHE D 237 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 151 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 201 CG CD OE1 NE2 REMARK 470 LYS A 205 CG CD CE NZ REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 LYS C 205 CG CD CE NZ REMARK 470 GLN D 153 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 162 151.32 -49.60 REMARK 500 GLN C 153 -17.19 67.55 REMARK 500 THR C 233 11.86 -62.02 REMARK 500 ALA D 171 67.90 -105.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HR4694F RELATED DB: TARGETDB DBREF 3NY5 A 153 237 UNP P15056 BRAF_HUMAN 153 237 DBREF 3NY5 B 153 237 UNP P15056 BRAF_HUMAN 153 237 DBREF 3NY5 C 153 237 UNP P15056 BRAF_HUMAN 153 237 DBREF 3NY5 D 153 237 UNP P15056 BRAF_HUMAN 153 237 SEQADV 3NY5 MSE A 142 UNP P15056 EXPRESSION TAG SEQADV 3NY5 GLY A 143 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS A 144 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS A 145 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS A 146 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS A 147 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS A 148 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS A 149 UNP P15056 EXPRESSION TAG SEQADV 3NY5 SER A 150 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS A 151 UNP P15056 EXPRESSION TAG SEQADV 3NY5 MSE A 152 UNP P15056 EXPRESSION TAG SEQADV 3NY5 MSE B 142 UNP P15056 EXPRESSION TAG SEQADV 3NY5 GLY B 143 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS B 144 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS B 145 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS B 146 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS B 147 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS B 148 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS B 149 UNP P15056 EXPRESSION TAG SEQADV 3NY5 SER B 150 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS B 151 UNP P15056 EXPRESSION TAG SEQADV 3NY5 MSE B 152 UNP P15056 EXPRESSION TAG SEQADV 3NY5 MSE C 142 UNP P15056 EXPRESSION TAG SEQADV 3NY5 GLY C 143 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS C 144 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS C 145 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS C 146 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS C 147 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS C 148 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS C 149 UNP P15056 EXPRESSION TAG SEQADV 3NY5 SER C 150 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS C 151 UNP P15056 EXPRESSION TAG SEQADV 3NY5 MSE C 152 UNP P15056 EXPRESSION TAG SEQADV 3NY5 MSE D 142 UNP P15056 EXPRESSION TAG SEQADV 3NY5 GLY D 143 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS D 144 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS D 145 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS D 146 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS D 147 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS D 148 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS D 149 UNP P15056 EXPRESSION TAG SEQADV 3NY5 SER D 150 UNP P15056 EXPRESSION TAG SEQADV 3NY5 HIS D 151 UNP P15056 EXPRESSION TAG SEQADV 3NY5 MSE D 152 UNP P15056 EXPRESSION TAG SEQRES 1 A 96 MSE GLY HIS HIS HIS HIS HIS HIS SER HIS MSE GLN LYS SEQRES 2 A 96 PRO ILE VAL ARG VAL PHE LEU PRO ASN LYS GLN ARG THR SEQRES 3 A 96 VAL VAL PRO ALA ARG CYS GLY VAL THR VAL ARG ASP SER SEQRES 4 A 96 LEU LYS LYS ALA LEU MSE MSE ARG GLY LEU ILE PRO GLU SEQRES 5 A 96 CYS CYS ALA VAL TYR ARG ILE GLN ASP GLY GLU LYS LYS SEQRES 6 A 96 PRO ILE GLY TRP ASP THR ASP ILE SER TRP LEU THR GLY SEQRES 7 A 96 GLU GLU LEU HIS VAL GLU VAL LEU GLU ASN VAL PRO LEU SEQRES 8 A 96 THR THR HIS ASN PHE SEQRES 1 B 96 MSE GLY HIS HIS HIS HIS HIS HIS SER HIS MSE GLN LYS SEQRES 2 B 96 PRO ILE VAL ARG VAL PHE LEU PRO ASN LYS GLN ARG THR SEQRES 3 B 96 VAL VAL PRO ALA ARG CYS GLY VAL THR VAL ARG ASP SER SEQRES 4 B 96 LEU LYS LYS ALA LEU MSE MSE ARG GLY LEU ILE PRO GLU SEQRES 5 B 96 CYS CYS ALA VAL TYR ARG ILE GLN ASP GLY GLU LYS LYS SEQRES 6 B 96 PRO ILE GLY TRP ASP THR ASP ILE SER TRP LEU THR GLY SEQRES 7 B 96 GLU GLU LEU HIS VAL GLU VAL LEU GLU ASN VAL PRO LEU SEQRES 8 B 96 THR THR HIS ASN PHE SEQRES 1 C 96 MSE GLY HIS HIS HIS HIS HIS HIS SER HIS MSE GLN LYS SEQRES 2 C 96 PRO ILE VAL ARG VAL PHE LEU PRO ASN LYS GLN ARG THR SEQRES 3 C 96 VAL VAL PRO ALA ARG CYS GLY VAL THR VAL ARG ASP SER SEQRES 4 C 96 LEU LYS LYS ALA LEU MSE MSE ARG GLY LEU ILE PRO GLU SEQRES 5 C 96 CYS CYS ALA VAL TYR ARG ILE GLN ASP GLY GLU LYS LYS SEQRES 6 C 96 PRO ILE GLY TRP ASP THR ASP ILE SER TRP LEU THR GLY SEQRES 7 C 96 GLU GLU LEU HIS VAL GLU VAL LEU GLU ASN VAL PRO LEU SEQRES 8 C 96 THR THR HIS ASN PHE SEQRES 1 D 96 MSE GLY HIS HIS HIS HIS HIS HIS SER HIS MSE GLN LYS SEQRES 2 D 96 PRO ILE VAL ARG VAL PHE LEU PRO ASN LYS GLN ARG THR SEQRES 3 D 96 VAL VAL PRO ALA ARG CYS GLY VAL THR VAL ARG ASP SER SEQRES 4 D 96 LEU LYS LYS ALA LEU MSE MSE ARG GLY LEU ILE PRO GLU SEQRES 5 D 96 CYS CYS ALA VAL TYR ARG ILE GLN ASP GLY GLU LYS LYS SEQRES 6 D 96 PRO ILE GLY TRP ASP THR ASP ILE SER TRP LEU THR GLY SEQRES 7 D 96 GLU GLU LEU HIS VAL GLU VAL LEU GLU ASN VAL PRO LEU SEQRES 8 D 96 THR THR HIS ASN PHE MODRES 3NY5 MSE A 152 MET SELENOMETHIONINE MODRES 3NY5 MSE A 186 MET SELENOMETHIONINE MODRES 3NY5 MSE A 187 MET SELENOMETHIONINE MODRES 3NY5 MSE B 152 MET SELENOMETHIONINE MODRES 3NY5 MSE B 186 MET SELENOMETHIONINE MODRES 3NY5 MSE B 187 MET SELENOMETHIONINE MODRES 3NY5 MSE C 152 MET SELENOMETHIONINE MODRES 3NY5 MSE C 186 MET SELENOMETHIONINE MODRES 3NY5 MSE C 187 MET SELENOMETHIONINE MODRES 3NY5 MSE D 152 MET SELENOMETHIONINE MODRES 3NY5 MSE D 186 MET SELENOMETHIONINE MODRES 3NY5 MSE D 187 MET SELENOMETHIONINE HET MSE A 152 8 HET MSE A 186 16 HET MSE A 187 8 HET MSE B 152 8 HET MSE B 186 16 HET MSE B 187 8 HET MSE C 152 8 HET MSE C 186 8 HET MSE C 187 8 HET MSE D 152 8 HET MSE D 186 16 HET MSE D 187 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 HOH *250(H2 O) HELIX 1 1 THR A 176 MSE A 187 1 12 HELIX 2 2 ILE A 191 GLU A 193 5 3 HELIX 3 3 ASP A 213 THR A 218 5 6 HELIX 4 4 THR B 176 MSE B 187 1 12 HELIX 5 5 ILE B 191 GLU B 193 5 3 HELIX 6 6 ASP B 213 THR B 218 5 6 HELIX 7 7 THR C 176 MSE C 187 1 12 HELIX 8 8 ILE C 191 GLU C 193 5 3 HELIX 9 9 ASP C 213 THR C 218 5 6 HELIX 10 10 THR D 176 ARG D 188 1 13 HELIX 11 11 ILE D 191 GLU D 193 5 3 HELIX 12 12 ASP D 213 THR D 218 5 6 SHEET 1 A 5 GLN A 165 PRO A 170 0 SHEET 2 A 5 ILE A 156 LEU A 161 -1 N LEU A 161 O GLN A 165 SHEET 3 A 5 GLU A 221 VAL A 226 1 O LEU A 222 N PHE A 160 SHEET 4 A 5 CYS A 195 ARG A 199 -1 N ALA A 196 O GLU A 225 SHEET 5 A 5 LYS A 206 ILE A 208 -1 O LYS A 206 N ARG A 199 SHEET 1 B 5 GLN B 165 PRO B 170 0 SHEET 2 B 5 ILE B 156 LEU B 161 -1 N VAL B 159 O THR B 167 SHEET 3 B 5 GLU B 221 VAL B 226 1 O LEU B 222 N PHE B 160 SHEET 4 B 5 CYS B 195 ARG B 199 -1 N ALA B 196 O GLU B 225 SHEET 5 B 5 LYS B 206 ILE B 208 -1 O LYS B 206 N ARG B 199 SHEET 1 C 5 GLN C 165 PRO C 170 0 SHEET 2 C 5 ILE C 156 LEU C 161 -1 N VAL C 159 O THR C 167 SHEET 3 C 5 GLU C 221 VAL C 226 1 O LEU C 222 N PHE C 160 SHEET 4 C 5 CYS C 195 ARG C 199 -1 N TYR C 198 O HIS C 223 SHEET 5 C 5 LYS C 206 ILE C 208 -1 O LYS C 206 N ARG C 199 SHEET 1 D 5 GLN D 165 PRO D 170 0 SHEET 2 D 5 ILE D 156 LEU D 161 -1 N LEU D 161 O GLN D 165 SHEET 3 D 5 GLU D 221 VAL D 226 1 O LEU D 222 N PHE D 160 SHEET 4 D 5 CYS D 195 ARG D 199 -1 N ALA D 196 O GLU D 225 SHEET 5 D 5 LYS D 206 PRO D 207 -1 O LYS D 206 N ARG D 199 LINK C MSE A 152 N GLN A 153 1555 1555 1.33 LINK C LEU A 185 N AMSE A 186 1555 1555 1.33 LINK C LEU A 185 N BMSE A 186 1555 1555 1.33 LINK C AMSE A 186 N MSE A 187 1555 1555 1.33 LINK C BMSE A 186 N MSE A 187 1555 1555 1.32 LINK C MSE A 187 N ARG A 188 1555 1555 1.33 LINK C HIS B 151 N MSE B 152 1555 1555 1.33 LINK C MSE B 152 N GLN B 153 1555 1555 1.32 LINK C LEU B 185 N AMSE B 186 1555 1555 1.33 LINK C LEU B 185 N BMSE B 186 1555 1555 1.33 LINK C AMSE B 186 N MSE B 187 1555 1555 1.33 LINK C BMSE B 186 N MSE B 187 1555 1555 1.33 LINK C MSE B 187 N ARG B 188 1555 1555 1.32 LINK C MSE C 152 N GLN C 153 1555 1555 1.33 LINK C LEU C 185 N MSE C 186 1555 1555 1.32 LINK C MSE C 186 N MSE C 187 1555 1555 1.32 LINK C MSE C 187 N ARG C 188 1555 1555 1.33 LINK C HIS D 151 N MSE D 152 1555 1555 1.33 LINK C LEU D 185 N AMSE D 186 1555 1555 1.33 LINK C LEU D 185 N BMSE D 186 1555 1555 1.33 LINK C AMSE D 186 N MSE D 187 1555 1555 1.33 LINK C BMSE D 186 N MSE D 187 1555 1555 1.33 LINK C MSE D 187 N ARG D 188 1555 1555 1.33 LINK C HIS A 151 N MSE A 152 1555 1555 1.32 LINK C MSE D 152 N GLN D 153 1555 1555 1.33 CRYST1 39.805 69.418 114.607 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025122 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008725 0.00000