data_3NY6 # _entry.id 3NY6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NY6 pdb_00003ny6 10.2210/pdb3ny6/pdb RCSB RCSB060426 ? ? WWPDB D_1000060426 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2Q6M 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with the PJ34 inhibitor' unspecified PDB 3ESS 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with the 1,8-Naphthalimide inhibitor' unspecified PDB 3KI0 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with inhibitor GP-D' unspecified PDB 3KI1 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with inhibitor GP-F' unspecified PDB 3KI2 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with inhibitor GP-G' unspecified PDB 3KI3 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with inhibitor GP-H' unspecified PDB 3KI4 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with inhibitor GP-P' unspecified PDB 3KI5 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with inhibitor GP-M' unspecified PDB 3KI6 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with inhibitor GP-L' unspecified PDB 3KI7 'Catalytic fragment of Cholix toxin from Vibrio Cholerae in complex with inhibitor GP-I' unspecified # _pdbx_database_status.entry_id 3NY6 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-07-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Merrill, A.R.' 1 'Jorgensen, R.' 2 # _citation.id primary _citation.title 'Newly discovered and characterized antivirulence compounds inhibit bacterial mono-ADP-ribosyltransferase toxins.' _citation.journal_abbrev 'Antimicrob.Agents Chemother.' _citation.journal_volume 55 _citation.page_first 983 _citation.page_last 991 _citation.year 2011 _citation.journal_id_ASTM AMACCQ _citation.country US _citation.journal_id_ISSN 0066-4804 _citation.journal_id_CSD 0788 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21135177 _citation.pdbx_database_id_DOI 10.1128/AAC.01164-10 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Turgeon, Z.' 1 ? primary 'Jorgensen, R.' 2 ? primary 'Visschedyk, D.' 3 ? primary 'Edwards, P.R.' 4 ? primary 'Legree, S.' 5 ? primary 'McGregor, C.' 6 ? primary 'Fieldhouse, R.J.' 7 ? primary 'Mangroo, D.' 8 ? primary 'Schapira, M.' 9 ? primary 'Merrill, A.R.' 10 ? # _cell.length_a 35.489 _cell.length_b 64.973 _cell.length_c 86.603 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3NY6 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3NY6 _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cholix toxin' 23334.842 1 2.4.2.36 ? 'C-terminal catalytic domain, residues 459-665' ? 2 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 3 non-polymer syn '2-[(5,6-dimethyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-(2-hydroxyethyl)acetamide' 313.396 1 ? ? ? ? 4 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 5 water nat water 18.015 266 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMAVITPQGVTNWTYQELEATHQALTREGYVFVGYHGTNHVAAQTIVNRIAPVPRGNNTENEEKWGGLYVATHAEVAH GYARIKEGTGEYGLPTRAERDARGVMLRVYIPRASLERFYRTNTPLENAEEHITQVIGHSLPLRNEAFTGPESAGGEDET VIGWDMAIHAVAIPSTIPGNAYEELAIDEEAVAKEQSISTKPPYKERKDEL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMAVITPQGVTNWTYQELEATHQALTREGYVFVGYHGTNHVAAQTIVNRIAPVPRGNNTENEEKWGGLYVATHAEVAH GYARIKEGTGEYGLPTRAERDARGVMLRVYIPRASLERFYRTNTPLENAEEHITQVIGHSLPLRNEAFTGPESAGGEDET VIGWDMAIHAVAIPSTIPGNAYEELAIDEEAVAKEQSISTKPPYKERKDEL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 VAL n 1 7 ILE n 1 8 THR n 1 9 PRO n 1 10 GLN n 1 11 GLY n 1 12 VAL n 1 13 THR n 1 14 ASN n 1 15 TRP n 1 16 THR n 1 17 TYR n 1 18 GLN n 1 19 GLU n 1 20 LEU n 1 21 GLU n 1 22 ALA n 1 23 THR n 1 24 HIS n 1 25 GLN n 1 26 ALA n 1 27 LEU n 1 28 THR n 1 29 ARG n 1 30 GLU n 1 31 GLY n 1 32 TYR n 1 33 VAL n 1 34 PHE n 1 35 VAL n 1 36 GLY n 1 37 TYR n 1 38 HIS n 1 39 GLY n 1 40 THR n 1 41 ASN n 1 42 HIS n 1 43 VAL n 1 44 ALA n 1 45 ALA n 1 46 GLN n 1 47 THR n 1 48 ILE n 1 49 VAL n 1 50 ASN n 1 51 ARG n 1 52 ILE n 1 53 ALA n 1 54 PRO n 1 55 VAL n 1 56 PRO n 1 57 ARG n 1 58 GLY n 1 59 ASN n 1 60 ASN n 1 61 THR n 1 62 GLU n 1 63 ASN n 1 64 GLU n 1 65 GLU n 1 66 LYS n 1 67 TRP n 1 68 GLY n 1 69 GLY n 1 70 LEU n 1 71 TYR n 1 72 VAL n 1 73 ALA n 1 74 THR n 1 75 HIS n 1 76 ALA n 1 77 GLU n 1 78 VAL n 1 79 ALA n 1 80 HIS n 1 81 GLY n 1 82 TYR n 1 83 ALA n 1 84 ARG n 1 85 ILE n 1 86 LYS n 1 87 GLU n 1 88 GLY n 1 89 THR n 1 90 GLY n 1 91 GLU n 1 92 TYR n 1 93 GLY n 1 94 LEU n 1 95 PRO n 1 96 THR n 1 97 ARG n 1 98 ALA n 1 99 GLU n 1 100 ARG n 1 101 ASP n 1 102 ALA n 1 103 ARG n 1 104 GLY n 1 105 VAL n 1 106 MET n 1 107 LEU n 1 108 ARG n 1 109 VAL n 1 110 TYR n 1 111 ILE n 1 112 PRO n 1 113 ARG n 1 114 ALA n 1 115 SER n 1 116 LEU n 1 117 GLU n 1 118 ARG n 1 119 PHE n 1 120 TYR n 1 121 ARG n 1 122 THR n 1 123 ASN n 1 124 THR n 1 125 PRO n 1 126 LEU n 1 127 GLU n 1 128 ASN n 1 129 ALA n 1 130 GLU n 1 131 GLU n 1 132 HIS n 1 133 ILE n 1 134 THR n 1 135 GLN n 1 136 VAL n 1 137 ILE n 1 138 GLY n 1 139 HIS n 1 140 SER n 1 141 LEU n 1 142 PRO n 1 143 LEU n 1 144 ARG n 1 145 ASN n 1 146 GLU n 1 147 ALA n 1 148 PHE n 1 149 THR n 1 150 GLY n 1 151 PRO n 1 152 GLU n 1 153 SER n 1 154 ALA n 1 155 GLY n 1 156 GLY n 1 157 GLU n 1 158 ASP n 1 159 GLU n 1 160 THR n 1 161 VAL n 1 162 ILE n 1 163 GLY n 1 164 TRP n 1 165 ASP n 1 166 MET n 1 167 ALA n 1 168 ILE n 1 169 HIS n 1 170 ALA n 1 171 VAL n 1 172 ALA n 1 173 ILE n 1 174 PRO n 1 175 SER n 1 176 THR n 1 177 ILE n 1 178 PRO n 1 179 GLY n 1 180 ASN n 1 181 ALA n 1 182 TYR n 1 183 GLU n 1 184 GLU n 1 185 LEU n 1 186 ALA n 1 187 ILE n 1 188 ASP n 1 189 GLU n 1 190 GLU n 1 191 ALA n 1 192 VAL n 1 193 ALA n 1 194 LYS n 1 195 GLU n 1 196 GLN n 1 197 SER n 1 198 ILE n 1 199 SER n 1 200 THR n 1 201 LYS n 1 202 PRO n 1 203 PRO n 1 204 TYR n 1 205 LYS n 1 206 GLU n 1 207 ARG n 1 208 LYS n 1 209 ASP n 1 210 GLU n 1 211 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'chxa, toxA' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain TP _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio cholerae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 666 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ER2566 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28A+ _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5EK40_VIBCH _struct_ref.pdbx_db_accession Q5EK40 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AVITPQGVTNWTYQELEATHQALTREGYVFVGYHGTNHVAAQTIVNRIAPVPRGNNTENEEKWGGLYVATHAEVAHGYAR IKEGTGEYGLPTRAERDARGVMLRVYIPRASLERFYRTNTPLENAEEHITQVIGHSLPLRNEAFTGPESAGGEDETVIGW DMAIHAVAIPSTIPGNAYEELAIDEEAVAKEQSISTKPPYKERKDEL ; _struct_ref.pdbx_align_begin 459 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3NY6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 211 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5EK40 _struct_ref_seq.db_align_beg 459 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 665 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 427 _struct_ref_seq.pdbx_auth_seq_align_end 633 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NY6 GLY A 1 ? UNP Q5EK40 ? ? 'expression tag' 423 1 1 3NY6 SER A 2 ? UNP Q5EK40 ? ? 'expression tag' 424 2 1 3NY6 HIS A 3 ? UNP Q5EK40 ? ? 'expression tag' 425 3 1 3NY6 MET A 4 ? UNP Q5EK40 ? ? 'expression tag' 426 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 V30 non-polymer . '2-[(5,6-dimethyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-(2-hydroxyethyl)acetamide' ? 'C12 H15 N3 O3 S2' 313.396 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3NY6 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.51 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '15% PEG-8000, 0.02 M KH2PO4, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2010-03-27 _diffrn_detector.details 'Multilayer mirror, curved to focus in the vertical (R = 400 m)' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Bent Si (111) crystal, horizontally focusing' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.03796 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'MAX II BEAMLINE I911-2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.03796 _diffrn_source.pdbx_synchrotron_site 'MAX II' _diffrn_source.pdbx_synchrotron_beamline I911-2 # _reflns.entry_id 3NY6 _reflns.d_resolution_high 1.680 _reflns.number_obs 23558 _reflns.pdbx_Rmerge_I_obs 0.058 _reflns.pdbx_netI_over_sigmaI 19.590 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 23.237 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.number_all 23603 _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 5.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.68 1.72 9095 ? 1695 0.523 3.7 ? ? 5.4 ? 1695 99.90 ? 1 1.72 1.77 9510 ? 1683 0.406 4.4 ? ? 5.7 ? 1683 100.00 ? 2 1.77 1.82 9116 ? 1601 0.323 5.6 ? ? 5.7 ? 1601 100.00 ? 3 1.82 1.88 8991 ? 1586 0.243 7.2 ? ? 5.7 ? 1586 99.90 ? 4 1.88 1.94 8634 ? 1525 0.183 9.1 ? ? 5.7 ? 1525 99.80 ? 5 1.94 2.01 8501 ? 1498 0.139 11.8 ? ? 5.7 ? 1498 100.00 ? 6 2.01 2.08 8157 ? 1441 0.120 13.4 ? ? 5.7 ? 1441 100.00 ? 7 2.08 2.17 7878 ? 1383 0.097 16.2 ? ? 5.7 ? 1383 99.90 ? 8 2.17 2.27 7514 ? 1324 0.084 18.7 ? ? 5.7 ? 1324 99.90 ? 9 2.27 2.38 7180 ? 1276 0.069 21.2 ? ? 5.6 ? 1276 99.90 ? 10 2.38 2.50 6877 ? 1210 0.063 23.1 ? ? 5.7 ? 1210 99.80 ? 11 2.50 2.66 6515 ? 1151 0.057 25.5 ? ? 5.7 ? 1151 99.70 ? 12 2.66 2.84 6196 ? 1101 0.049 28.8 ? ? 5.6 ? 1101 99.90 ? 13 2.84 3.07 5651 ? 1010 0.041 32.3 ? ? 5.6 ? 1010 100.00 ? 14 3.07 3.36 5303 ? 943 0.035 38.0 ? ? 5.6 ? 943 99.60 ? 15 3.36 3.76 4717 ? 858 0.032 43.3 ? ? 5.5 ? 858 99.70 ? 16 3.76 4.34 4228 ? 782 0.029 47.8 ? ? 5.4 ? 782 99.60 ? 17 4.34 5.31 3460 ? 642 0.026 48.4 ? ? 5.4 ? 642 99.20 ? 18 5.31 7.51 2798 ? 537 0.027 46.6 ? ? 5.2 ? 537 100.00 ? 19 7.51 30.0 1440 ? 312 0.022 46.0 ? ? 4.6 ? 327 95.40 ? 20 # _refine.entry_id 3NY6 _refine.ls_d_res_high 1.680 _refine.ls_d_res_low 29.310 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 100.000 _refine.ls_number_reflns_obs 23557 _refine.ls_number_reflns_all 23557 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.176 _refine.ls_R_factor_R_work 0.174 _refine.ls_wR_factor_R_work 0.168 _refine.ls_R_factor_R_free 0.200 _refine.ls_wR_factor_R_free 0.197 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 1178 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 17.342 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model isotropic _refine.aniso_B[1][1] 0.000 _refine.aniso_B[2][2] -0.000 _refine.aniso_B[3][3] 0.000 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] -0.000 _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.949 _refine.overall_SU_R_Cruickshank_DPI 0.108 _refine.overall_SU_R_free 0.107 _refine.pdbx_overall_ESU_R_Free 0.099 _refine.overall_SU_ML 0.059 _refine.overall_SU_B 3.738 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 2Q6M' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.870 _refine.B_iso_max 43.25 _refine.B_iso_min 2.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1547 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 266 _refine_hist.number_atoms_total 1850 _refine_hist.d_res_high 1.680 _refine_hist.d_res_low 29.310 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1628 0.012 0.021 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2216 1.363 1.956 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 198 5.797 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 79 31.332 23.544 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 247 13.440 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13 16.869 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 237 0.093 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1264 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 985 0.622 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1588 1.061 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 643 1.869 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 627 3.032 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.680 _refine_ls_shell.d_res_low 1.724 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1608 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.259 _refine_ls_shell.R_factor_R_free 0.284 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 84 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1692 _refine_ls_shell.number_reflns_obs 1608 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3NY6 _struct.title 'Catalytic fragment of cholix toxin from vibrio cholerae in complex with inhibitor V30' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NY6 _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE INHIBITOR' _struct_keywords.text 'ALPHA-BETA COMPLEX, ADP-ribosyl Transferase, NAD+ binding, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 16 ? GLU A 30 ? THR A 438 GLU A 452 1 ? 15 HELX_P HELX_P2 2 ASN A 41 ? ARG A 51 ? ASN A 463 ARG A 473 1 ? 11 HELX_P HELX_P3 3 GLU A 64 ? GLY A 68 ? GLU A 486 GLY A 490 5 ? 5 HELX_P HELX_P4 4 HIS A 75 ? GLY A 81 ? HIS A 497 GLY A 503 1 ? 7 HELX_P HELX_P5 5 GLY A 90 ? LEU A 94 ? GLY A 512 LEU A 516 5 ? 5 HELX_P HELX_P6 6 THR A 96 ? ALA A 102 ? THR A 518 ALA A 524 1 ? 7 HELX_P HELX_P7 7 ALA A 114 ? GLU A 117 ? ALA A 536 GLU A 539 5 ? 4 HELX_P HELX_P8 8 PRO A 125 ? ASN A 128 ? PRO A 547 ASN A 550 5 ? 4 HELX_P HELX_P9 9 ALA A 129 ? GLY A 138 ? ALA A 551 GLY A 560 1 ? 10 HELX_P HELX_P10 10 GLY A 163 ? ILE A 168 ? GLY A 585 ILE A 590 1 ? 6 HELX_P HELX_P11 11 ASP A 188 ? GLN A 196 ? ASP A 610 GLN A 618 1 ? 9 HELX_P HELX_P12 12 SER A 197 ? SER A 199 ? SER A 619 SER A 621 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LEU _struct_mon_prot_cis.label_seq_id 141 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LEU _struct_mon_prot_cis.auth_seq_id 563 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 142 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 564 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.65 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? THR A 8 ? VAL A 428 THR A 430 A 2 GLY A 11 ? THR A 13 ? GLY A 433 THR A 435 B 1 TYR A 32 ? THR A 40 ? TYR A 454 THR A 462 B 2 VAL A 105 ? PRO A 112 ? VAL A 527 PRO A 534 B 3 VAL A 171 ? PRO A 178 ? VAL A 593 PRO A 600 C 1 LEU A 70 ? VAL A 72 ? LEU A 492 VAL A 494 C 2 ASP A 158 ? ILE A 162 ? ASP A 580 ILE A 584 C 3 ALA A 147 ? PRO A 151 ? ALA A 569 PRO A 573 C 4 PHE A 119 ? ARG A 121 ? PHE A 541 ARG A 543 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 6 ? N VAL A 428 O THR A 13 ? O THR A 435 B 1 2 N THR A 40 ? N THR A 462 O VAL A 105 ? O VAL A 527 B 2 3 N ARG A 108 ? N ARG A 530 O ILE A 173 ? O ILE A 595 C 1 2 N LEU A 70 ? N LEU A 492 O ILE A 162 ? O ILE A 584 C 2 3 O VAL A 161 ? O VAL A 583 N PHE A 148 ? N PHE A 570 C 3 4 O ALA A 147 ? O ALA A 569 N TYR A 120 ? N TYR A 542 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GOL 3001 ? 10 'BINDING SITE FOR RESIDUE GOL A 3001' AC2 Software A GOL 3002 ? 8 'BINDING SITE FOR RESIDUE GOL A 3002' AC3 Software A V30 1 ? 8 'BINDING SITE FOR RESIDUE V30 A 1' AC4 Software A PO4 2 ? 6 'BINDING SITE FOR RESIDUE PO4 A 2' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 VAL A 49 ? VAL A 471 . ? 1_555 ? 2 AC1 10 ASN A 50 ? ASN A 472 . ? 1_555 ? 3 AC1 10 ARG A 51 ? ARG A 473 . ? 1_555 ? 4 AC1 10 GLU A 127 ? GLU A 549 . ? 1_655 ? 5 AC1 10 ASN A 128 ? ASN A 550 . ? 1_655 ? 6 AC1 10 ALA A 154 ? ALA A 576 . ? 1_655 ? 7 AC1 10 HOH F . ? HOH A 1002 . ? 1_555 ? 8 AC1 10 HOH F . ? HOH A 1021 . ? 1_555 ? 9 AC1 10 HOH F . ? HOH A 1044 . ? 1_555 ? 10 AC1 10 HOH F . ? HOH A 1097 . ? 1_555 ? 11 AC2 8 HIS A 24 ? HIS A 446 . ? 1_555 ? 12 AC2 8 PHE A 34 ? PHE A 456 . ? 1_555 ? 13 AC2 8 SER A 197 ? SER A 619 . ? 1_555 ? 14 AC2 8 ILE A 198 ? ILE A 620 . ? 1_555 ? 15 AC2 8 SER A 199 ? SER A 621 . ? 1_555 ? 16 AC2 8 THR A 200 ? THR A 622 . ? 1_555 ? 17 AC2 8 HOH F . ? HOH A 1051 . ? 1_555 ? 18 AC2 8 HOH F . ? HOH A 1157 . ? 1_555 ? 19 AC3 8 PO4 E . ? PO4 A 2 . ? 1_555 ? 20 AC3 8 HIS A 38 ? HIS A 460 . ? 1_555 ? 21 AC3 8 GLY A 39 ? GLY A 461 . ? 1_555 ? 22 AC3 8 TYR A 71 ? TYR A 493 . ? 1_555 ? 23 AC3 8 ALA A 79 ? ALA A 501 . ? 1_555 ? 24 AC3 8 TYR A 82 ? TYR A 504 . ? 1_555 ? 25 AC3 8 GLU A 159 ? GLU A 581 . ? 1_555 ? 26 AC3 8 HOH F . ? HOH A 1249 . ? 1_555 ? 27 AC4 6 V30 D . ? V30 A 1 . ? 1_555 ? 28 AC4 6 HIS A 38 ? HIS A 460 . ? 1_555 ? 29 AC4 6 THR A 40 ? THR A 462 . ? 1_555 ? 30 AC4 6 ILE A 48 ? ILE A 470 . ? 1_555 ? 31 AC4 6 HOH F . ? HOH A 1113 . ? 1_555 ? 32 AC4 6 HOH F . ? HOH A 1180 . ? 1_555 ? # _atom_sites.entry_id 3NY6 _atom_sites.fract_transf_matrix[1][1] 0.028178 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015391 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011547 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 423 ? ? ? A . n A 1 2 SER 2 424 ? ? ? A . n A 1 3 HIS 3 425 425 HIS HIS A . n A 1 4 MET 4 426 426 MET MET A . n A 1 5 ALA 5 427 427 ALA ALA A . n A 1 6 VAL 6 428 428 VAL VAL A . n A 1 7 ILE 7 429 429 ILE ILE A . n A 1 8 THR 8 430 430 THR THR A . n A 1 9 PRO 9 431 431 PRO PRO A . n A 1 10 GLN 10 432 432 GLN GLN A . n A 1 11 GLY 11 433 433 GLY GLY A . n A 1 12 VAL 12 434 434 VAL VAL A . n A 1 13 THR 13 435 435 THR THR A . n A 1 14 ASN 14 436 436 ASN ASN A . n A 1 15 TRP 15 437 437 TRP TRP A . n A 1 16 THR 16 438 438 THR THR A . n A 1 17 TYR 17 439 439 TYR TYR A . n A 1 18 GLN 18 440 440 GLN GLN A . n A 1 19 GLU 19 441 441 GLU GLU A . n A 1 20 LEU 20 442 442 LEU LEU A . n A 1 21 GLU 21 443 443 GLU GLU A . n A 1 22 ALA 22 444 444 ALA ALA A . n A 1 23 THR 23 445 445 THR THR A . n A 1 24 HIS 24 446 446 HIS HIS A . n A 1 25 GLN 25 447 447 GLN GLN A . n A 1 26 ALA 26 448 448 ALA ALA A . n A 1 27 LEU 27 449 449 LEU LEU A . n A 1 28 THR 28 450 450 THR THR A . n A 1 29 ARG 29 451 451 ARG ARG A . n A 1 30 GLU 30 452 452 GLU GLU A . n A 1 31 GLY 31 453 453 GLY GLY A . n A 1 32 TYR 32 454 454 TYR TYR A . n A 1 33 VAL 33 455 455 VAL VAL A . n A 1 34 PHE 34 456 456 PHE PHE A . n A 1 35 VAL 35 457 457 VAL VAL A . n A 1 36 GLY 36 458 458 GLY GLY A . n A 1 37 TYR 37 459 459 TYR TYR A . n A 1 38 HIS 38 460 460 HIS HIS A . n A 1 39 GLY 39 461 461 GLY GLY A . n A 1 40 THR 40 462 462 THR THR A . n A 1 41 ASN 41 463 463 ASN ASN A . n A 1 42 HIS 42 464 464 HIS HIS A . n A 1 43 VAL 43 465 465 VAL VAL A . n A 1 44 ALA 44 466 466 ALA ALA A . n A 1 45 ALA 45 467 467 ALA ALA A . n A 1 46 GLN 46 468 468 GLN GLN A . n A 1 47 THR 47 469 469 THR THR A . n A 1 48 ILE 48 470 470 ILE ILE A . n A 1 49 VAL 49 471 471 VAL VAL A . n A 1 50 ASN 50 472 472 ASN ASN A . n A 1 51 ARG 51 473 473 ARG ARG A . n A 1 52 ILE 52 474 474 ILE ILE A . n A 1 53 ALA 53 475 475 ALA ALA A . n A 1 54 PRO 54 476 476 PRO PRO A . n A 1 55 VAL 55 477 477 VAL VAL A . n A 1 56 PRO 56 478 ? ? ? A . n A 1 57 ARG 57 479 ? ? ? A . n A 1 58 GLY 58 480 ? ? ? A . n A 1 59 ASN 59 481 ? ? ? A . n A 1 60 ASN 60 482 ? ? ? A . n A 1 61 THR 61 483 ? ? ? A . n A 1 62 GLU 62 484 ? ? ? A . n A 1 63 ASN 63 485 485 ASN ASN A . n A 1 64 GLU 64 486 486 GLU GLU A . n A 1 65 GLU 65 487 487 GLU GLU A . n A 1 66 LYS 66 488 488 LYS LYS A . n A 1 67 TRP 67 489 489 TRP TRP A . n A 1 68 GLY 68 490 490 GLY GLY A . n A 1 69 GLY 69 491 491 GLY GLY A . n A 1 70 LEU 70 492 492 LEU LEU A . n A 1 71 TYR 71 493 493 TYR TYR A . n A 1 72 VAL 72 494 494 VAL VAL A . n A 1 73 ALA 73 495 495 ALA ALA A . n A 1 74 THR 74 496 496 THR THR A . n A 1 75 HIS 75 497 497 HIS HIS A . n A 1 76 ALA 76 498 498 ALA ALA A . n A 1 77 GLU 77 499 499 GLU GLU A . n A 1 78 VAL 78 500 500 VAL VAL A . n A 1 79 ALA 79 501 501 ALA ALA A . n A 1 80 HIS 80 502 502 HIS HIS A . n A 1 81 GLY 81 503 503 GLY GLY A . n A 1 82 TYR 82 504 504 TYR TYR A . n A 1 83 ALA 83 505 505 ALA ALA A . n A 1 84 ARG 84 506 506 ARG ARG A . n A 1 85 ILE 85 507 507 ILE ILE A . n A 1 86 LYS 86 508 508 LYS LYS A . n A 1 87 GLU 87 509 509 GLU GLU A . n A 1 88 GLY 88 510 510 GLY GLY A . n A 1 89 THR 89 511 511 THR THR A . n A 1 90 GLY 90 512 512 GLY GLY A . n A 1 91 GLU 91 513 513 GLU GLU A . n A 1 92 TYR 92 514 514 TYR TYR A . n A 1 93 GLY 93 515 515 GLY GLY A . n A 1 94 LEU 94 516 516 LEU LEU A . n A 1 95 PRO 95 517 517 PRO PRO A . n A 1 96 THR 96 518 518 THR THR A . n A 1 97 ARG 97 519 519 ARG ARG A . n A 1 98 ALA 98 520 520 ALA ALA A . n A 1 99 GLU 99 521 521 GLU GLU A . n A 1 100 ARG 100 522 522 ARG ARG A . n A 1 101 ASP 101 523 523 ASP ASP A . n A 1 102 ALA 102 524 524 ALA ALA A . n A 1 103 ARG 103 525 525 ARG ARG A . n A 1 104 GLY 104 526 526 GLY GLY A . n A 1 105 VAL 105 527 527 VAL VAL A . n A 1 106 MET 106 528 528 MET MET A . n A 1 107 LEU 107 529 529 LEU LEU A . n A 1 108 ARG 108 530 530 ARG ARG A . n A 1 109 VAL 109 531 531 VAL VAL A . n A 1 110 TYR 110 532 532 TYR TYR A . n A 1 111 ILE 111 533 533 ILE ILE A . n A 1 112 PRO 112 534 534 PRO PRO A . n A 1 113 ARG 113 535 535 ARG ARG A . n A 1 114 ALA 114 536 536 ALA ALA A . n A 1 115 SER 115 537 537 SER SER A . n A 1 116 LEU 116 538 538 LEU LEU A . n A 1 117 GLU 117 539 539 GLU GLU A . n A 1 118 ARG 118 540 540 ARG ARG A . n A 1 119 PHE 119 541 541 PHE PHE A . n A 1 120 TYR 120 542 542 TYR TYR A . n A 1 121 ARG 121 543 543 ARG ARG A . n A 1 122 THR 122 544 544 THR THR A . n A 1 123 ASN 123 545 545 ASN ASN A . n A 1 124 THR 124 546 546 THR THR A . n A 1 125 PRO 125 547 547 PRO PRO A . n A 1 126 LEU 126 548 548 LEU LEU A . n A 1 127 GLU 127 549 549 GLU GLU A . n A 1 128 ASN 128 550 550 ASN ASN A . n A 1 129 ALA 129 551 551 ALA ALA A . n A 1 130 GLU 130 552 552 GLU GLU A . n A 1 131 GLU 131 553 553 GLU GLU A . n A 1 132 HIS 132 554 554 HIS HIS A . n A 1 133 ILE 133 555 555 ILE ILE A . n A 1 134 THR 134 556 556 THR THR A . n A 1 135 GLN 135 557 557 GLN GLN A . n A 1 136 VAL 136 558 558 VAL VAL A . n A 1 137 ILE 137 559 559 ILE ILE A . n A 1 138 GLY 138 560 560 GLY GLY A . n A 1 139 HIS 139 561 561 HIS HIS A . n A 1 140 SER 140 562 562 SER SER A . n A 1 141 LEU 141 563 563 LEU LEU A . n A 1 142 PRO 142 564 564 PRO PRO A . n A 1 143 LEU 143 565 565 LEU LEU A . n A 1 144 ARG 144 566 566 ARG ARG A . n A 1 145 ASN 145 567 567 ASN ASN A . n A 1 146 GLU 146 568 568 GLU GLU A . n A 1 147 ALA 147 569 569 ALA ALA A . n A 1 148 PHE 148 570 570 PHE PHE A . n A 1 149 THR 149 571 571 THR THR A . n A 1 150 GLY 150 572 572 GLY GLY A . n A 1 151 PRO 151 573 573 PRO PRO A . n A 1 152 GLU 152 574 574 GLU GLU A . n A 1 153 SER 153 575 575 SER SER A . n A 1 154 ALA 154 576 576 ALA ALA A . n A 1 155 GLY 155 577 577 GLY GLY A . n A 1 156 GLY 156 578 578 GLY GLY A . n A 1 157 GLU 157 579 579 GLU GLU A . n A 1 158 ASP 158 580 580 ASP ASP A . n A 1 159 GLU 159 581 581 GLU GLU A . n A 1 160 THR 160 582 582 THR THR A . n A 1 161 VAL 161 583 583 VAL VAL A . n A 1 162 ILE 162 584 584 ILE ILE A . n A 1 163 GLY 163 585 585 GLY GLY A . n A 1 164 TRP 164 586 586 TRP TRP A . n A 1 165 ASP 165 587 587 ASP ASP A . n A 1 166 MET 166 588 588 MET MET A . n A 1 167 ALA 167 589 589 ALA ALA A . n A 1 168 ILE 168 590 590 ILE ILE A . n A 1 169 HIS 169 591 591 HIS HIS A . n A 1 170 ALA 170 592 592 ALA ALA A . n A 1 171 VAL 171 593 593 VAL VAL A . n A 1 172 ALA 172 594 594 ALA ALA A . n A 1 173 ILE 173 595 595 ILE ILE A . n A 1 174 PRO 174 596 596 PRO PRO A . n A 1 175 SER 175 597 597 SER SER A . n A 1 176 THR 176 598 598 THR THR A . n A 1 177 ILE 177 599 599 ILE ILE A . n A 1 178 PRO 178 600 600 PRO PRO A . n A 1 179 GLY 179 601 601 GLY GLY A . n A 1 180 ASN 180 602 602 ASN ASN A . n A 1 181 ALA 181 603 603 ALA ALA A . n A 1 182 TYR 182 604 604 TYR TYR A . n A 1 183 GLU 183 605 605 GLU GLU A . n A 1 184 GLU 184 606 606 GLU GLU A . n A 1 185 LEU 185 607 607 LEU LEU A . n A 1 186 ALA 186 608 608 ALA ALA A . n A 1 187 ILE 187 609 609 ILE ILE A . n A 1 188 ASP 188 610 610 ASP ASP A . n A 1 189 GLU 189 611 611 GLU GLU A . n A 1 190 GLU 190 612 612 GLU GLU A . n A 1 191 ALA 191 613 613 ALA ALA A . n A 1 192 VAL 192 614 614 VAL VAL A . n A 1 193 ALA 193 615 615 ALA ALA A . n A 1 194 LYS 194 616 616 LYS LYS A . n A 1 195 GLU 195 617 617 GLU GLU A . n A 1 196 GLN 196 618 618 GLN GLN A . n A 1 197 SER 197 619 619 SER SER A . n A 1 198 ILE 198 620 620 ILE ILE A . n A 1 199 SER 199 621 621 SER SER A . n A 1 200 THR 200 622 622 THR THR A . n A 1 201 LYS 201 623 623 LYS LYS A . n A 1 202 PRO 202 624 624 PRO PRO A . n A 1 203 PRO 203 625 625 PRO PRO A . n A 1 204 TYR 204 626 626 TYR TYR A . n A 1 205 LYS 205 627 627 LYS LYS A . n A 1 206 GLU 206 628 628 GLU GLU A . n A 1 207 ARG 207 629 629 ARG ARG A . n A 1 208 LYS 208 630 ? ? ? A . n A 1 209 ASP 209 631 ? ? ? A . n A 1 210 GLU 210 632 ? ? ? A . n A 1 211 LEU 211 633 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL 1 3001 3001 GOL GOL A . C 2 GOL 1 3002 3002 GOL GOL A . D 3 V30 1 1 1 V30 V30 A . E 4 PO4 1 2 2 PO4 PO4 A . F 5 HOH 1 1001 1001 HOH HOH A . F 5 HOH 2 1002 1002 HOH HOH A . F 5 HOH 3 1004 1004 HOH HOH A . F 5 HOH 4 1005 1005 HOH HOH A . F 5 HOH 5 1006 1006 HOH HOH A . F 5 HOH 6 1007 1007 HOH HOH A . F 5 HOH 7 1008 1008 HOH HOH A . F 5 HOH 8 1010 1010 HOH HOH A . F 5 HOH 9 1011 1011 HOH HOH A . F 5 HOH 10 1013 1013 HOH HOH A . F 5 HOH 11 1014 1014 HOH HOH A . F 5 HOH 12 1015 1015 HOH HOH A . F 5 HOH 13 1016 1016 HOH HOH A . F 5 HOH 14 1017 1017 HOH HOH A . F 5 HOH 15 1018 1018 HOH HOH A . F 5 HOH 16 1019 1019 HOH HOH A . F 5 HOH 17 1020 1020 HOH HOH A . F 5 HOH 18 1021 1021 HOH HOH A . F 5 HOH 19 1022 1022 HOH HOH A . F 5 HOH 20 1023 1023 HOH HOH A . F 5 HOH 21 1024 1024 HOH HOH A . F 5 HOH 22 1025 1025 HOH HOH A . F 5 HOH 23 1026 1026 HOH HOH A . F 5 HOH 24 1027 1027 HOH HOH A . F 5 HOH 25 1028 1028 HOH HOH A . F 5 HOH 26 1029 1029 HOH HOH A . F 5 HOH 27 1031 1031 HOH HOH A . F 5 HOH 28 1032 1032 HOH HOH A . F 5 HOH 29 1034 1034 HOH HOH A . F 5 HOH 30 1035 1035 HOH HOH A . F 5 HOH 31 1036 1036 HOH HOH A . F 5 HOH 32 1038 1038 HOH HOH A . F 5 HOH 33 1039 1039 HOH HOH A . F 5 HOH 34 1040 1040 HOH HOH A . F 5 HOH 35 1041 1041 HOH HOH A . F 5 HOH 36 1042 1042 HOH HOH A . F 5 HOH 37 1043 1043 HOH HOH A . F 5 HOH 38 1044 1044 HOH HOH A . F 5 HOH 39 1045 1045 HOH HOH A . F 5 HOH 40 1046 1046 HOH HOH A . F 5 HOH 41 1047 1047 HOH HOH A . F 5 HOH 42 1048 1048 HOH HOH A . F 5 HOH 43 1049 1049 HOH HOH A . F 5 HOH 44 1050 1050 HOH HOH A . F 5 HOH 45 1051 1051 HOH HOH A . F 5 HOH 46 1052 1052 HOH HOH A . F 5 HOH 47 1054 1054 HOH HOH A . F 5 HOH 48 1056 1056 HOH HOH A . F 5 HOH 49 1057 1057 HOH HOH A . F 5 HOH 50 1058 1058 HOH HOH A . F 5 HOH 51 1059 1059 HOH HOH A . F 5 HOH 52 1060 1060 HOH HOH A . F 5 HOH 53 1061 1061 HOH HOH A . F 5 HOH 54 1062 1062 HOH HOH A . F 5 HOH 55 1063 1063 HOH HOH A . F 5 HOH 56 1064 1064 HOH HOH A . F 5 HOH 57 1065 1065 HOH HOH A . F 5 HOH 58 1066 1066 HOH HOH A . F 5 HOH 59 1067 1067 HOH HOH A . F 5 HOH 60 1068 1068 HOH HOH A . F 5 HOH 61 1069 1069 HOH HOH A . F 5 HOH 62 1070 1070 HOH HOH A . F 5 HOH 63 1071 1071 HOH HOH A . F 5 HOH 64 1072 1072 HOH HOH A . F 5 HOH 65 1073 1073 HOH HOH A . F 5 HOH 66 1074 1074 HOH HOH A . F 5 HOH 67 1075 1075 HOH HOH A . F 5 HOH 68 1076 1076 HOH HOH A . F 5 HOH 69 1077 1077 HOH HOH A . F 5 HOH 70 1078 1078 HOH HOH A . F 5 HOH 71 1079 1079 HOH HOH A . F 5 HOH 72 1081 1081 HOH HOH A . F 5 HOH 73 1082 1082 HOH HOH A . F 5 HOH 74 1084 1084 HOH HOH A . F 5 HOH 75 1085 1085 HOH HOH A . F 5 HOH 76 1086 1086 HOH HOH A . F 5 HOH 77 1087 1087 HOH HOH A . F 5 HOH 78 1088 1088 HOH HOH A . F 5 HOH 79 1089 1089 HOH HOH A . F 5 HOH 80 1090 1090 HOH HOH A . F 5 HOH 81 1091 1091 HOH HOH A . F 5 HOH 82 1092 1092 HOH HOH A . F 5 HOH 83 1093 1093 HOH HOH A . F 5 HOH 84 1094 1094 HOH HOH A . F 5 HOH 85 1095 1095 HOH HOH A . F 5 HOH 86 1096 1096 HOH HOH A . F 5 HOH 87 1097 1097 HOH HOH A . F 5 HOH 88 1098 1098 HOH HOH A . F 5 HOH 89 1099 1099 HOH HOH A . F 5 HOH 90 1100 1100 HOH HOH A . F 5 HOH 91 1101 1101 HOH HOH A . F 5 HOH 92 1102 1102 HOH HOH A . F 5 HOH 93 1103 1103 HOH HOH A . F 5 HOH 94 1104 1104 HOH HOH A . F 5 HOH 95 1105 1105 HOH HOH A . F 5 HOH 96 1106 1106 HOH HOH A . F 5 HOH 97 1107 1107 HOH HOH A . F 5 HOH 98 1108 1108 HOH HOH A . F 5 HOH 99 1109 1109 HOH HOH A . F 5 HOH 100 1110 1110 HOH HOH A . F 5 HOH 101 1111 1111 HOH HOH A . F 5 HOH 102 1112 1112 HOH HOH A . F 5 HOH 103 1113 1113 HOH HOH A . F 5 HOH 104 1114 1114 HOH HOH A . F 5 HOH 105 1115 1115 HOH HOH A . F 5 HOH 106 1116 1116 HOH HOH A . F 5 HOH 107 1117 1117 HOH HOH A . F 5 HOH 108 1118 1118 HOH HOH A . F 5 HOH 109 1119 1119 HOH HOH A . F 5 HOH 110 1120 1120 HOH HOH A . F 5 HOH 111 1121 1121 HOH HOH A . F 5 HOH 112 1122 1122 HOH HOH A . F 5 HOH 113 1123 1123 HOH HOH A . F 5 HOH 114 1124 1124 HOH HOH A . F 5 HOH 115 1125 1125 HOH HOH A . F 5 HOH 116 1126 1126 HOH HOH A . F 5 HOH 117 1127 1127 HOH HOH A . F 5 HOH 118 1128 1128 HOH HOH A . F 5 HOH 119 1130 1130 HOH HOH A . F 5 HOH 120 1131 1131 HOH HOH A . F 5 HOH 121 1132 1132 HOH HOH A . F 5 HOH 122 1133 1133 HOH HOH A . F 5 HOH 123 1134 1134 HOH HOH A . F 5 HOH 124 1135 1135 HOH HOH A . F 5 HOH 125 1136 1136 HOH HOH A . F 5 HOH 126 1137 1137 HOH HOH A . F 5 HOH 127 1138 1138 HOH HOH A . F 5 HOH 128 1139 1139 HOH HOH A . F 5 HOH 129 1140 1140 HOH HOH A . F 5 HOH 130 1142 1142 HOH HOH A . F 5 HOH 131 1143 1143 HOH HOH A . F 5 HOH 132 1144 1144 HOH HOH A . F 5 HOH 133 1145 1145 HOH HOH A . F 5 HOH 134 1146 1146 HOH HOH A . F 5 HOH 135 1147 1147 HOH HOH A . F 5 HOH 136 1148 1148 HOH HOH A . F 5 HOH 137 1149 1149 HOH HOH A . F 5 HOH 138 1150 1150 HOH HOH A . F 5 HOH 139 1152 1152 HOH HOH A . F 5 HOH 140 1154 1154 HOH HOH A . F 5 HOH 141 1155 1155 HOH HOH A . F 5 HOH 142 1156 1156 HOH HOH A . F 5 HOH 143 1157 1157 HOH HOH A . F 5 HOH 144 1158 1158 HOH HOH A . F 5 HOH 145 1159 1159 HOH HOH A . F 5 HOH 146 1160 1160 HOH HOH A . F 5 HOH 147 1162 1162 HOH HOH A . F 5 HOH 148 1163 1163 HOH HOH A . F 5 HOH 149 1164 1164 HOH HOH A . F 5 HOH 150 1165 1165 HOH HOH A . F 5 HOH 151 1166 1166 HOH HOH A . F 5 HOH 152 1167 1167 HOH HOH A . F 5 HOH 153 1168 1168 HOH HOH A . F 5 HOH 154 1169 1169 HOH HOH A . F 5 HOH 155 1170 1170 HOH HOH A . F 5 HOH 156 1171 1171 HOH HOH A . F 5 HOH 157 1172 1172 HOH HOH A . F 5 HOH 158 1173 1173 HOH HOH A . F 5 HOH 159 1174 1174 HOH HOH A . F 5 HOH 160 1175 1175 HOH HOH A . F 5 HOH 161 1177 1177 HOH HOH A . F 5 HOH 162 1178 1178 HOH HOH A . F 5 HOH 163 1179 1179 HOH HOH A . F 5 HOH 164 1180 1180 HOH HOH A . F 5 HOH 165 1181 1181 HOH HOH A . F 5 HOH 166 1182 1182 HOH HOH A . F 5 HOH 167 1183 1183 HOH HOH A . F 5 HOH 168 1184 1184 HOH HOH A . F 5 HOH 169 1185 1185 HOH HOH A . F 5 HOH 170 1186 1186 HOH HOH A . F 5 HOH 171 1187 1187 HOH HOH A . F 5 HOH 172 1188 1188 HOH HOH A . F 5 HOH 173 1189 1189 HOH HOH A . F 5 HOH 174 1190 1190 HOH HOH A . F 5 HOH 175 1191 1191 HOH HOH A . F 5 HOH 176 1192 1192 HOH HOH A . F 5 HOH 177 1194 1194 HOH HOH A . F 5 HOH 178 1196 1196 HOH HOH A . F 5 HOH 179 1199 1199 HOH HOH A . F 5 HOH 180 1200 1200 HOH HOH A . F 5 HOH 181 1201 1201 HOH HOH A . F 5 HOH 182 1202 1202 HOH HOH A . F 5 HOH 183 1203 1203 HOH HOH A . F 5 HOH 184 1204 1204 HOH HOH A . F 5 HOH 185 1205 1205 HOH HOH A . F 5 HOH 186 1206 1206 HOH HOH A . F 5 HOH 187 1207 1207 HOH HOH A . F 5 HOH 188 1208 1208 HOH HOH A . F 5 HOH 189 1209 1209 HOH HOH A . F 5 HOH 190 1210 1210 HOH HOH A . F 5 HOH 191 1211 1211 HOH HOH A . F 5 HOH 192 1212 1212 HOH HOH A . F 5 HOH 193 1213 1213 HOH HOH A . F 5 HOH 194 1214 1214 HOH HOH A . F 5 HOH 195 1215 1215 HOH HOH A . F 5 HOH 196 1216 1216 HOH HOH A . F 5 HOH 197 1217 1217 HOH HOH A . F 5 HOH 198 1218 1218 HOH HOH A . F 5 HOH 199 1219 1219 HOH HOH A . F 5 HOH 200 1220 1220 HOH HOH A . F 5 HOH 201 1221 1221 HOH HOH A . F 5 HOH 202 1222 1222 HOH HOH A . F 5 HOH 203 1223 1223 HOH HOH A . F 5 HOH 204 1224 1224 HOH HOH A . F 5 HOH 205 1225 1225 HOH HOH A . F 5 HOH 206 1226 1226 HOH HOH A . F 5 HOH 207 1227 1227 HOH HOH A . F 5 HOH 208 1228 1228 HOH HOH A . F 5 HOH 209 1229 1229 HOH HOH A . F 5 HOH 210 1230 1230 HOH HOH A . F 5 HOH 211 1231 1231 HOH HOH A . F 5 HOH 212 1233 1233 HOH HOH A . F 5 HOH 213 1234 1234 HOH HOH A . F 5 HOH 214 1237 1237 HOH HOH A . F 5 HOH 215 1238 1238 HOH HOH A . F 5 HOH 216 1239 1239 HOH HOH A . F 5 HOH 217 1240 1240 HOH HOH A . F 5 HOH 218 1241 1241 HOH HOH A . F 5 HOH 219 1242 1242 HOH HOH A . F 5 HOH 220 1243 1243 HOH HOH A . F 5 HOH 221 1244 1244 HOH HOH A . F 5 HOH 222 1245 1245 HOH HOH A . F 5 HOH 223 1246 1246 HOH HOH A . F 5 HOH 224 1247 1247 HOH HOH A . F 5 HOH 225 1248 1248 HOH HOH A . F 5 HOH 226 1249 1249 HOH HOH A . F 5 HOH 227 1250 1250 HOH HOH A . F 5 HOH 228 1252 1252 HOH HOH A . F 5 HOH 229 1253 1253 HOH HOH A . F 5 HOH 230 1254 1254 HOH HOH A . F 5 HOH 231 1255 1255 HOH HOH A . F 5 HOH 232 1256 1256 HOH HOH A . F 5 HOH 233 1258 1258 HOH HOH A . F 5 HOH 234 1259 1259 HOH HOH A . F 5 HOH 235 1260 1260 HOH HOH A . F 5 HOH 236 1262 1262 HOH HOH A . F 5 HOH 237 1263 1263 HOH HOH A . F 5 HOH 238 1264 1264 HOH HOH A . F 5 HOH 239 1265 1265 HOH HOH A . F 5 HOH 240 1266 1266 HOH HOH A . F 5 HOH 241 1268 1268 HOH HOH A . F 5 HOH 242 1269 1269 HOH HOH A . F 5 HOH 243 1270 1270 HOH HOH A . F 5 HOH 244 1272 1272 HOH HOH A . F 5 HOH 245 1273 1273 HOH HOH A . F 5 HOH 246 1274 1274 HOH HOH A . F 5 HOH 247 1275 1275 HOH HOH A . F 5 HOH 248 1276 1276 HOH HOH A . F 5 HOH 249 1277 1277 HOH HOH A . F 5 HOH 250 1279 1279 HOH HOH A . F 5 HOH 251 1280 1280 HOH HOH A . F 5 HOH 252 1282 1282 HOH HOH A . F 5 HOH 253 1284 1284 HOH HOH A . F 5 HOH 254 1286 1286 HOH HOH A . F 5 HOH 255 1289 1289 HOH HOH A . F 5 HOH 256 1290 1290 HOH HOH A . F 5 HOH 257 1292 1292 HOH HOH A . F 5 HOH 258 1293 1293 HOH HOH A . F 5 HOH 259 1296 1296 HOH HOH A . F 5 HOH 260 1297 1297 HOH HOH A . F 5 HOH 261 1298 1298 HOH HOH A . F 5 HOH 262 1299 1299 HOH HOH A . F 5 HOH 263 1300 1300 HOH HOH A . F 5 HOH 264 1301 1301 HOH HOH A . F 5 HOH 265 1302 1302 HOH HOH A . F 5 HOH 266 1303 1303 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-29 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2018-03-07 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_source 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 0.7620 12.3990 -19.5380 0.1477 0.1405 0.1894 0.0331 0.0465 0.0385 0.0092 20.7008 4.3616 -0.3095 0.0774 0.0669 0.0579 -0.1913 0.1335 0.0222 0.0284 -0.8186 -0.6813 0.4060 0.3522 'X-RAY DIFFRACTION' 2 ? refined 1.8280 -2.2950 -21.3530 0.0555 0.0708 0.0569 0.0018 0.0424 -0.0051 4.6890 6.1574 5.2085 -0.7968 0.1794 -2.9136 0.1050 -0.0332 -0.0718 0.2942 0.1016 -0.1933 -0.4753 0.0260 0.0632 'X-RAY DIFFRACTION' 3 ? refined -10.9700 4.9150 -10.0460 0.0416 0.0498 0.0335 -0.0040 0.0131 -0.0019 1.9625 2.5693 1.1984 -0.0084 0.0151 -0.4896 0.0041 0.0137 -0.0178 -0.1587 0.1816 0.0179 0.1438 -0.1113 -0.0153 'X-RAY DIFFRACTION' 4 ? refined -16.6120 25.7700 -9.4500 0.2518 0.2033 0.0717 0.0186 0.0596 -0.0087 11.0922 31.1726 14.5907 -4.6587 3.6431 13.3897 -0.1416 -0.3021 0.4437 -0.4170 -0.1775 0.8390 2.0968 0.3265 -0.2294 'X-RAY DIFFRACTION' 5 ? refined -11.4020 19.7180 -16.2290 0.0782 0.0757 0.1156 0.0107 -0.0219 -0.0044 0.2296 4.9100 0.4313 -1.0374 0.1566 -0.6889 -0.0197 -0.0076 0.0273 -0.0039 0.0539 -0.0930 0.0130 -0.1455 -0.0908 'X-RAY DIFFRACTION' 6 ? refined -11.9080 -10.8370 -7.0850 0.0943 0.0552 0.0339 -0.0111 -0.0250 0.0130 5.3869 3.2825 0.5366 0.4357 -0.9119 -1.0046 -0.0169 -0.0462 0.0631 -0.0934 -0.3314 -0.1718 0.0043 0.1011 -0.0071 'X-RAY DIFFRACTION' 7 ? refined -24.7970 -7.4320 0.9470 0.0575 0.0844 0.0499 -0.0232 0.0355 0.0043 3.9737 3.0569 7.6057 -1.2461 3.5954 -1.8495 0.0278 0.0623 -0.0901 -0.3056 0.0676 0.3083 0.2066 -0.1460 -0.2153 'X-RAY DIFFRACTION' 8 ? refined -14.1190 -2.2990 -5.8760 0.0522 0.0455 0.0080 -0.0002 -0.0074 -0.0110 2.5620 1.1262 0.1947 0.7326 -0.5685 0.0235 0.0561 -0.0559 -0.0001 -0.2031 0.0411 -0.0005 0.1179 -0.0246 0.0349 'X-RAY DIFFRACTION' 9 ? refined -13.9580 9.9650 -24.3800 0.0865 0.0855 0.0664 -0.0227 -0.0085 0.0451 1.9933 11.9080 4.3029 -1.8235 -0.1216 4.9085 -0.0109 -0.0065 0.0174 0.1927 0.1527 0.3582 -0.5497 -0.2343 -0.1213 'X-RAY DIFFRACTION' 10 ? refined -12.8960 -9.1810 -17.0620 0.0613 0.0537 0.0457 -0.0004 -0.0245 -0.0168 6.0174 7.4963 11.2220 4.8232 -6.7555 -7.0947 -0.2937 0.2261 0.0676 0.3309 -0.2250 0.1092 -0.4033 0.5035 -0.4256 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 425 A 435 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 436 A 452 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 453 A 507 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 508 A 513 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 514 A 531 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 532 A 545 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 546 A 562 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 563 A 598 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 A 599 A 616 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 A 617 A 628 ? . . . . ? # _pdbx_phasing_MR.entry_id 3NY6 _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 39.400 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 29.310 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 29.310 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.1.4 'Mon Oct 19 01:03:18 2009' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.100 'May. 21, 2010' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 MAR345dtb . ? ? ? ? 'data collection' ? ? ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 473 ? ? -176.22 133.46 2 1 ARG A 566 ? ? -100.28 -114.61 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 423 ? A GLY 1 2 1 Y 1 A SER 424 ? A SER 2 3 1 Y 1 A PRO 478 ? A PRO 56 4 1 Y 1 A ARG 479 ? A ARG 57 5 1 Y 1 A GLY 480 ? A GLY 58 6 1 Y 1 A ASN 481 ? A ASN 59 7 1 Y 1 A ASN 482 ? A ASN 60 8 1 Y 1 A THR 483 ? A THR 61 9 1 Y 1 A GLU 484 ? A GLU 62 10 1 Y 1 A LYS 630 ? A LYS 208 11 1 Y 1 A ASP 631 ? A ASP 209 12 1 Y 1 A GLU 632 ? A GLU 210 13 1 Y 1 A LEU 633 ? A LEU 211 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 GOL C1 C N N 123 GOL O1 O N N 124 GOL C2 C N N 125 GOL O2 O N N 126 GOL C3 C N N 127 GOL O3 O N N 128 GOL H11 H N N 129 GOL H12 H N N 130 GOL HO1 H N N 131 GOL H2 H N N 132 GOL HO2 H N N 133 GOL H31 H N N 134 GOL H32 H N N 135 GOL HO3 H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PO4 P P N N 273 PO4 O1 O N N 274 PO4 O2 O N N 275 PO4 O3 O N N 276 PO4 O4 O N N 277 PRO N N N N 278 PRO CA C N S 279 PRO C C N N 280 PRO O O N N 281 PRO CB C N N 282 PRO CG C N N 283 PRO CD C N N 284 PRO OXT O N N 285 PRO H H N N 286 PRO HA H N N 287 PRO HB2 H N N 288 PRO HB3 H N N 289 PRO HG2 H N N 290 PRO HG3 H N N 291 PRO HD2 H N N 292 PRO HD3 H N N 293 PRO HXT H N N 294 SER N N N N 295 SER CA C N S 296 SER C C N N 297 SER O O N N 298 SER CB C N N 299 SER OG O N N 300 SER OXT O N N 301 SER H H N N 302 SER H2 H N N 303 SER HA H N N 304 SER HB2 H N N 305 SER HB3 H N N 306 SER HG H N N 307 SER HXT H N N 308 THR N N N N 309 THR CA C N S 310 THR C C N N 311 THR O O N N 312 THR CB C N R 313 THR OG1 O N N 314 THR CG2 C N N 315 THR OXT O N N 316 THR H H N N 317 THR H2 H N N 318 THR HA H N N 319 THR HB H N N 320 THR HG1 H N N 321 THR HG21 H N N 322 THR HG22 H N N 323 THR HG23 H N N 324 THR HXT H N N 325 TRP N N N N 326 TRP CA C N S 327 TRP C C N N 328 TRP O O N N 329 TRP CB C N N 330 TRP CG C Y N 331 TRP CD1 C Y N 332 TRP CD2 C Y N 333 TRP NE1 N Y N 334 TRP CE2 C Y N 335 TRP CE3 C Y N 336 TRP CZ2 C Y N 337 TRP CZ3 C Y N 338 TRP CH2 C Y N 339 TRP OXT O N N 340 TRP H H N N 341 TRP H2 H N N 342 TRP HA H N N 343 TRP HB2 H N N 344 TRP HB3 H N N 345 TRP HD1 H N N 346 TRP HE1 H N N 347 TRP HE3 H N N 348 TRP HZ2 H N N 349 TRP HZ3 H N N 350 TRP HH2 H N N 351 TRP HXT H N N 352 TYR N N N N 353 TYR CA C N S 354 TYR C C N N 355 TYR O O N N 356 TYR CB C N N 357 TYR CG C Y N 358 TYR CD1 C Y N 359 TYR CD2 C Y N 360 TYR CE1 C Y N 361 TYR CE2 C Y N 362 TYR CZ C Y N 363 TYR OH O N N 364 TYR OXT O N N 365 TYR H H N N 366 TYR H2 H N N 367 TYR HA H N N 368 TYR HB2 H N N 369 TYR HB3 H N N 370 TYR HD1 H N N 371 TYR HD2 H N N 372 TYR HE1 H N N 373 TYR HE2 H N N 374 TYR HH H N N 375 TYR HXT H N N 376 V30 N1I N N N 377 V30 N1J N N N 378 V30 N1K N N N 379 V30 CAA C N N 380 V30 CAB C N N 381 V30 OAC O N N 382 V30 OAD O N N 383 V30 OAE O N N 384 V30 CAF C N N 385 V30 CAG C N N 386 V30 CAH C N N 387 V30 SAL S N N 388 V30 SAM S Y N 389 V30 CAN C N N 390 V30 CAO C Y N 391 V30 CAP C Y N 392 V30 CAQ C N N 393 V30 CAR C N N 394 V30 CAS C Y N 395 V30 CAT C Y N 396 V30 HN1J H N N 397 V30 HN1K H N N 398 V30 HAA H N N 399 V30 HAAA H N N 400 V30 HAAB H N N 401 V30 HAB H N N 402 V30 HABA H N N 403 V30 HABB H N N 404 V30 HOAE H N N 405 V30 HAF H N N 406 V30 HAFA H N N 407 V30 HAG H N N 408 V30 HAGA H N N 409 V30 HAH H N N 410 V30 HAHA H N N 411 VAL N N N N 412 VAL CA C N S 413 VAL C C N N 414 VAL O O N N 415 VAL CB C N N 416 VAL CG1 C N N 417 VAL CG2 C N N 418 VAL OXT O N N 419 VAL H H N N 420 VAL H2 H N N 421 VAL HA H N N 422 VAL HB H N N 423 VAL HG11 H N N 424 VAL HG12 H N N 425 VAL HG13 H N N 426 VAL HG21 H N N 427 VAL HG22 H N N 428 VAL HG23 H N N 429 VAL HXT H N N 430 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 GOL C1 O1 sing N N 116 GOL C1 C2 sing N N 117 GOL C1 H11 sing N N 118 GOL C1 H12 sing N N 119 GOL O1 HO1 sing N N 120 GOL C2 O2 sing N N 121 GOL C2 C3 sing N N 122 GOL C2 H2 sing N N 123 GOL O2 HO2 sing N N 124 GOL C3 O3 sing N N 125 GOL C3 H31 sing N N 126 GOL C3 H32 sing N N 127 GOL O3 HO3 sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PO4 P O1 doub N N 260 PO4 P O2 sing N N 261 PO4 P O3 sing N N 262 PO4 P O4 sing N N 263 PRO N CA sing N N 264 PRO N CD sing N N 265 PRO N H sing N N 266 PRO CA C sing N N 267 PRO CA CB sing N N 268 PRO CA HA sing N N 269 PRO C O doub N N 270 PRO C OXT sing N N 271 PRO CB CG sing N N 272 PRO CB HB2 sing N N 273 PRO CB HB3 sing N N 274 PRO CG CD sing N N 275 PRO CG HG2 sing N N 276 PRO CG HG3 sing N N 277 PRO CD HD2 sing N N 278 PRO CD HD3 sing N N 279 PRO OXT HXT sing N N 280 SER N CA sing N N 281 SER N H sing N N 282 SER N H2 sing N N 283 SER CA C sing N N 284 SER CA CB sing N N 285 SER CA HA sing N N 286 SER C O doub N N 287 SER C OXT sing N N 288 SER CB OG sing N N 289 SER CB HB2 sing N N 290 SER CB HB3 sing N N 291 SER OG HG sing N N 292 SER OXT HXT sing N N 293 THR N CA sing N N 294 THR N H sing N N 295 THR N H2 sing N N 296 THR CA C sing N N 297 THR CA CB sing N N 298 THR CA HA sing N N 299 THR C O doub N N 300 THR C OXT sing N N 301 THR CB OG1 sing N N 302 THR CB CG2 sing N N 303 THR CB HB sing N N 304 THR OG1 HG1 sing N N 305 THR CG2 HG21 sing N N 306 THR CG2 HG22 sing N N 307 THR CG2 HG23 sing N N 308 THR OXT HXT sing N N 309 TRP N CA sing N N 310 TRP N H sing N N 311 TRP N H2 sing N N 312 TRP CA C sing N N 313 TRP CA CB sing N N 314 TRP CA HA sing N N 315 TRP C O doub N N 316 TRP C OXT sing N N 317 TRP CB CG sing N N 318 TRP CB HB2 sing N N 319 TRP CB HB3 sing N N 320 TRP CG CD1 doub Y N 321 TRP CG CD2 sing Y N 322 TRP CD1 NE1 sing Y N 323 TRP CD1 HD1 sing N N 324 TRP CD2 CE2 doub Y N 325 TRP CD2 CE3 sing Y N 326 TRP NE1 CE2 sing Y N 327 TRP NE1 HE1 sing N N 328 TRP CE2 CZ2 sing Y N 329 TRP CE3 CZ3 doub Y N 330 TRP CE3 HE3 sing N N 331 TRP CZ2 CH2 doub Y N 332 TRP CZ2 HZ2 sing N N 333 TRP CZ3 CH2 sing Y N 334 TRP CZ3 HZ3 sing N N 335 TRP CH2 HH2 sing N N 336 TRP OXT HXT sing N N 337 TYR N CA sing N N 338 TYR N H sing N N 339 TYR N H2 sing N N 340 TYR CA C sing N N 341 TYR CA CB sing N N 342 TYR CA HA sing N N 343 TYR C O doub N N 344 TYR C OXT sing N N 345 TYR CB CG sing N N 346 TYR CB HB2 sing N N 347 TYR CB HB3 sing N N 348 TYR CG CD1 doub Y N 349 TYR CG CD2 sing Y N 350 TYR CD1 CE1 sing Y N 351 TYR CD1 HD1 sing N N 352 TYR CD2 CE2 doub Y N 353 TYR CD2 HD2 sing N N 354 TYR CE1 CZ doub Y N 355 TYR CE1 HE1 sing N N 356 TYR CE2 CZ sing Y N 357 TYR CE2 HE2 sing N N 358 TYR CZ OH sing N N 359 TYR OH HH sing N N 360 TYR OXT HXT sing N N 361 V30 CAQ N1I doub N N 362 V30 CAS N1I sing N N 363 V30 CAN N1J sing N N 364 V30 CAG N1J sing N N 365 V30 N1J HN1J sing N N 366 V30 CAR N1K sing N N 367 V30 N1K CAQ sing N N 368 V30 N1K HN1K sing N N 369 V30 CAA CAO sing N N 370 V30 CAA HAA sing N N 371 V30 CAA HAAA sing N N 372 V30 CAA HAAB sing N N 373 V30 CAB CAP sing N N 374 V30 CAB HAB sing N N 375 V30 CAB HABA sing N N 376 V30 CAB HABB sing N N 377 V30 OAC CAN doub N N 378 V30 OAD CAR doub N N 379 V30 CAF OAE sing N N 380 V30 OAE HOAE sing N N 381 V30 CAG CAF sing N N 382 V30 CAF HAF sing N N 383 V30 CAF HAFA sing N N 384 V30 CAG HAG sing N N 385 V30 CAG HAGA sing N N 386 V30 SAL CAH sing N N 387 V30 CAN CAH sing N N 388 V30 CAH HAH sing N N 389 V30 CAH HAHA sing N N 390 V30 CAQ SAL sing N N 391 V30 CAO SAM sing Y N 392 V30 CAS SAM sing Y N 393 V30 CAP CAO doub Y N 394 V30 CAP CAT sing Y N 395 V30 CAR CAT sing N N 396 V30 CAT CAS doub Y N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 GLYCEROL GOL 3 '2-[(5,6-dimethyl-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)sulfanyl]-N-(2-hydroxyethyl)acetamide' V30 4 'PHOSPHATE ION' PO4 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2Q6M _pdbx_initial_refinement_model.details 'PDB entry 2Q6M' #