HEADER TRANSFERASE/RNA BINDING PROTEIN 14-JUL-10 3NYB TITLE STRUCTURE AND FUNCTION OF THE POLYMERASE CORE OF TRAMP, A RNA TITLE 2 SURVEILLANCE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A) RNA POLYMERASE PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CENTRAL AND CATALYTIC DOMAINS OF TRF4P (UNP RESIDUES 161- COMPND 5 481); COMPND 6 SYNONYM: DNA POLYMERASE SIGMA, DNA POLYMERASE KAPPA, TOPOISOMERASE 1- COMPND 7 RELATED PROTEIN TRF4; COMPND 8 EC: 2.7.7.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: PROTEIN AIR2; COMPND 13 CHAIN: B; COMPND 14 FRAGMENT: FOURTH AND FIFTH ZINC KNUCKLES OF AIR2P (UNP RESIDUES 118- COMPND 15 198); COMPND 16 SYNONYM: ARGININE METHYLTRANSFERASE-INTERACTING RING FINGER PROTEIN COMPND 17 2; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PAP2, TRF4, YOL115W, O0716, HRC584; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 10 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 11 ORGANISM_TAXID: 4932; SOURCE 12 GENE: AIR2, YDL175C; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYA RNA POLYMERASE, ZINC KNUCKLE PROTEIN, RNA SURVEILLANCE, MTR4P KEYWDS 2 BINDS TO TRF4P/AIR2P HETERODIMER, TRANSFERASE-RNA BINDING PROTEIN KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.M.REINISCH,S.HAMILL REVDAT 6 21-FEB-24 3NYB 1 REMARK SEQADV LINK REVDAT 5 14-AUG-19 3NYB 1 REMARK REVDAT 4 17-JUL-19 3NYB 1 REMARK REVDAT 3 08-SEP-10 3NYB 1 JRNL REVDAT 2 25-AUG-10 3NYB 1 JRNL REVDAT 1 04-AUG-10 3NYB 0 JRNL AUTH S.HAMILL,S.L.WOLIN,K.M.REINISCH JRNL TITL STRUCTURE AND FUNCTION OF THE POLYMERASE CORE OF TRAMP, A JRNL TITL 2 RNA SURVEILLANCE COMPLEX. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 15045 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20696927 JRNL DOI 10.1073/PNAS.1003505107 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.140 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 14108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.940 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6570 - 5.1528 1.00 2024 151 0.1758 0.2148 REMARK 3 2 5.1528 - 4.0960 1.00 1960 139 0.1446 0.2053 REMARK 3 3 4.0960 - 3.5800 1.00 1916 149 0.1793 0.2430 REMARK 3 4 3.5800 - 3.2535 0.99 1883 155 0.2159 0.3137 REMARK 3 5 3.2535 - 3.0208 0.97 1845 141 0.2363 0.3363 REMARK 3 6 3.0208 - 2.8429 0.93 1774 138 0.2316 0.3017 REMARK 3 7 2.8429 - 2.7007 0.89 1727 106 0.2445 0.3298 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 39.54 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.05380 REMARK 3 B22 (A**2) : -1.05380 REMARK 3 B33 (A**2) : 2.10760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3152 REMARK 3 ANGLE : 1.034 4260 REMARK 3 CHIRALITY : 0.070 464 REMARK 3 PLANARITY : 0.004 546 REMARK 3 DIHEDRAL : 19.127 1142 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: RESSEQ 159:189 OR RESSEQ 303:481 REMARK 3 ORIGIN FOR THE GROUP (A): 58.4410 3.7212 -26.4413 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.1811 REMARK 3 T33: 0.1715 T12: 0.0549 REMARK 3 T13: 0.0986 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.2468 L22: 1.7138 REMARK 3 L33: 1.0354 L12: -0.6808 REMARK 3 L13: -0.7510 L23: 0.1905 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: 0.0256 S13: -0.2468 REMARK 3 S21: -0.3362 S22: -0.1998 S23: -0.1111 REMARK 3 S31: 0.0864 S32: 0.2312 S33: -0.1151 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: RESSEQ 190:302 REMARK 3 ORIGIN FOR THE GROUP (A): 64.8871 16.7498 -1.5634 REMARK 3 T TENSOR REMARK 3 T11: 0.0443 T22: 0.1745 REMARK 3 T33: 0.1766 T12: -0.0578 REMARK 3 T13: -0.0114 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 0.7651 L22: 1.3288 REMARK 3 L33: 0.5820 L12: 0.2214 REMARK 3 L13: -0.4229 L23: -0.0180 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: -0.1517 S13: -0.0211 REMARK 3 S21: -0.0871 S22: -0.1486 S23: -0.3250 REMARK 3 S31: -0.0593 S32: 0.1553 S33: -0.0663 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: RESSEQ 1122:1146 OR RESSEQ 2147 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5781 -2.6239 -44.3231 REMARK 3 T TENSOR REMARK 3 T11: 0.7565 T22: 0.4997 REMARK 3 T33: 0.3950 T12: 0.0839 REMARK 3 T13: 0.0480 T23: -0.2570 REMARK 3 L TENSOR REMARK 3 L11: 0.0277 L22: 0.0242 REMARK 3 L33: 0.0491 L12: 0.0217 REMARK 3 L13: -0.0119 L23: 0.0891 REMARK 3 S TENSOR REMARK 3 S11: 0.5109 S12: 0.6855 S13: -0.0929 REMARK 3 S21: -0.4244 S22: -0.6726 S23: 0.3698 REMARK 3 S31: 0.0695 S32: -0.1318 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: RESSEQ 1160:1198 OR RESSEQ 2148 REMARK 3 ORIGIN FOR THE GROUP (A): 65.5754 -7.4108 -38.4191 REMARK 3 T TENSOR REMARK 3 T11: 0.7030 T22: 0.4914 REMARK 3 T33: 0.5686 T12: 0.0820 REMARK 3 T13: 0.2600 T23: -0.2463 REMARK 3 L TENSOR REMARK 3 L11: 0.1909 L22: 0.0797 REMARK 3 L33: 0.0111 L12: -0.1569 REMARK 3 L13: 0.1768 L23: -0.0673 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: 0.1110 S13: -0.6752 REMARK 3 S21: -0.8346 S22: -0.1662 S23: -0.3238 REMARK 3 S31: 0.1738 S32: 0.4882 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060431. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28215 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED SI DOUBLE REMARK 200 CRYSTAL (111) MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16163 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.08200 REMARK 200 R SYM FOR SHELL (I) : 0.86000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CITRATE AT PH 5.8, 200 REMARK 280 MM SODIUM ACETATE, 11% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 116 REMARK 465 SER B 117 REMARK 465 TRP B 118 REMARK 465 LYS B 119 REMARK 465 LYS B 120 REMARK 465 VAL B 121 REMARK 465 ASP B 147 REMARK 465 ASP B 148 REMARK 465 ASN B 149 REMARK 465 GLU B 150 REMARK 465 LYS B 151 REMARK 465 ALA B 152 REMARK 465 LYS B 153 REMARK 465 PRO B 154 REMARK 465 LYS B 155 REMARK 465 VAL B 156 REMARK 465 LEU B 157 REMARK 465 PRO B 158 REMARK 465 PHE B 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 329 O ARG A 332 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 167 42.91 -140.09 REMARK 500 TRP A 178 -62.90 -25.99 REMARK 500 GLU A 244 79.22 -63.02 REMARK 500 THR A 268 -96.23 -100.44 REMARK 500 LYS A 275 74.72 -110.14 REMARK 500 ALA A 276 57.88 79.09 REMARK 500 ARG A 277 -1.53 72.82 REMARK 500 ASN A 300 67.20 -106.13 REMARK 500 ILE A 302 -56.25 -139.15 REMARK 500 ASN A 371 24.98 -146.36 REMARK 500 ASP A 398 57.10 70.98 REMARK 500 ASP A 428 96.78 -162.13 REMARK 500 GLU A 429 2.60 -68.33 REMARK 500 LEU A 470 126.31 -39.31 REMARK 500 LYS A 480 -80.74 -108.23 REMARK 500 LYS B 127 -2.73 74.67 REMARK 500 GLU B 134 23.91 -73.66 REMARK 500 ARG B 135 21.17 -169.29 REMARK 500 ASP B 176 52.16 -105.31 REMARK 500 ARG B 184 -1.53 -59.44 REMARK 500 ASN B 187 65.42 -166.20 REMARK 500 PHE B 193 56.48 -96.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2147 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 123 SG REMARK 620 2 HIS B 131 NE2 144.4 REMARK 620 3 CYS B 136 SG 79.9 126.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2148 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 164 SG REMARK 620 2 CYS B 167 SG 106.1 REMARK 620 3 HIS B 172 NE2 93.1 110.4 REMARK 620 4 CYS B 177 SG 96.7 136.0 105.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2147 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2148 DBREF 3NYB A 161 481 UNP P53632 PAP2_YEAST 161 481 DBREF 3NYB B 118 198 UNP Q12476 AIR2_YEAST 118 198 SEQADV 3NYB GLY A 159 UNP P53632 EXPRESSION TAG SEQADV 3NYB SER A 160 UNP P53632 EXPRESSION TAG SEQADV 3NYB ALA A 293 UNP P53632 ASP 293 ENGINEERED MUTATION SEQADV 3NYB GLY B 116 UNP Q12476 EXPRESSION TAG SEQADV 3NYB SER B 117 UNP Q12476 EXPRESSION TAG SEQRES 1 A 323 GLY SER TYR PRO TRP ILE LEU ASN HIS ASP HIS SER LYS SEQRES 2 A 323 GLN LYS GLU ILE SER ASP TRP LEU THR PHE GLU ILE LYS SEQRES 3 A 323 ASP PHE VAL ALA TYR ILE SER PRO SER ARG GLU GLU ILE SEQRES 4 A 323 GLU ILE ARG ASN GLN THR ILE SER THR ILE ARG GLU ALA SEQRES 5 A 323 VAL LYS GLN LEU TRP PRO ASP ALA ASP LEU HIS VAL PHE SEQRES 6 A 323 GLY SER TYR SER THR ASP LEU TYR LEU PRO GLY SER ASP SEQRES 7 A 323 ILE ASP CYS VAL VAL THR SER GLU LEU GLY GLY LYS GLU SEQRES 8 A 323 SER ARG ASN ASN LEU TYR SER LEU ALA SER HIS LEU LYS SEQRES 9 A 323 LYS LYS ASN LEU ALA THR GLU VAL GLU VAL VAL ALA LYS SEQRES 10 A 323 ALA ARG VAL PRO ILE ILE LYS PHE VAL GLU PRO HIS SER SEQRES 11 A 323 GLY ILE HIS ILE ALA VAL SER PHE GLU ARG THR ASN GLY SEQRES 12 A 323 ILE GLU ALA ALA LYS LEU ILE ARG GLU TRP LEU ASP ASP SEQRES 13 A 323 THR PRO GLY LEU ARG GLU LEU VAL LEU ILE VAL LYS GLN SEQRES 14 A 323 PHE LEU HIS ALA ARG ARG LEU ASN ASN VAL HIS THR GLY SEQRES 15 A 323 GLY LEU GLY GLY PHE SER ILE ILE CYS LEU VAL PHE SER SEQRES 16 A 323 PHE LEU HIS MET HIS PRO ARG ILE ILE THR ASN GLU ILE SEQRES 17 A 323 ASP PRO LYS ASP ASN LEU GLY VAL LEU LEU ILE GLU PHE SEQRES 18 A 323 PHE GLU LEU TYR GLY LYS ASN PHE GLY TYR ASP ASP VAL SEQRES 19 A 323 ALA LEU GLY SER SER ASP GLY TYR PRO VAL TYR PHE PRO SEQRES 20 A 323 LYS SER THR TRP SER ALA ILE GLN PRO ILE LYS ASN PRO SEQRES 21 A 323 PHE SER LEU ALA ILE GLN ASP PRO GLY ASP GLU SER ASN SEQRES 22 A 323 ASN ILE SER ARG GLY SER PHE ASN ILE ARG ASP ILE LYS SEQRES 23 A 323 LYS ALA PHE ALA GLY ALA PHE ASP LEU LEU THR ASN ARG SEQRES 24 A 323 CYS PHE GLU LEU HIS SER ALA THR PHE LYS ASP ARG LEU SEQRES 25 A 323 GLY LYS SER ILE LEU GLY ASN VAL ILE LYS TYR SEQRES 1 B 83 GLY SER TRP LYS LYS VAL GLN CYS THR LEU CYS LYS SER SEQRES 2 B 83 LYS LYS HIS SER LYS GLU ARG CYS PRO SER ILE TRP ARG SEQRES 3 B 83 ALA TYR ILE LEU VAL ASP ASP ASN GLU LYS ALA LYS PRO SEQRES 4 B 83 LYS VAL LEU PRO PHE HIS THR ILE TYR CYS TYR ASN CYS SEQRES 5 B 83 GLY GLY LYS GLY HIS PHE GLY ASP ASP CYS LYS GLU LYS SEQRES 6 B 83 ARG SER SER ARG VAL PRO ASN GLU ASP GLY SER ALA PHE SEQRES 7 B 83 THR GLY SER ASN LEU HET ZN B2147 1 HET ZN B2148 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *58(H2 O) HELIX 1 1 TYR A 161 LEU A 165 5 5 HELIX 2 2 GLU A 174 ILE A 190 1 17 HELIX 3 3 SER A 193 GLN A 213 1 21 HELIX 4 4 GLY A 246 LYS A 248 5 3 HELIX 5 5 GLU A 249 LYS A 264 1 16 HELIX 6 6 ILE A 302 ASP A 314 1 13 HELIX 7 7 GLY A 317 ARG A 332 1 16 HELIX 8 8 ASN A 336 GLY A 340 5 5 HELIX 9 9 GLY A 343 MET A 357 1 15 HELIX 10 10 HIS A 358 THR A 363 1 6 HELIX 11 11 ASP A 367 ASP A 370 5 4 HELIX 12 12 ASN A 371 ASN A 386 1 16 HELIX 13 13 SER A 407 GLN A 413 5 7 HELIX 14 14 ASN A 439 SER A 463 1 25 HELIX 15 15 THR A 465 LEU A 470 1 6 HELIX 16 16 SER B 132 TRP B 140 5 9 HELIX 17 17 PHE B 173 CYS B 177 5 5 SHEET 1 A 5 LEU A 220 PHE A 223 0 SHEET 2 A 5 ILE A 237 VAL A 241 -1 O ASP A 238 N PHE A 223 SHEET 3 A 5 ILE A 290 SER A 295 1 O ALA A 293 N CYS A 239 SHEET 4 A 5 PRO A 279 GLU A 285 -1 N ILE A 281 O VAL A 294 SHEET 5 A 5 GLU A 271 ALA A 274 -1 N VAL A 273 O ILE A 280 SHEET 1 B 2 VAL A 392 SER A 396 0 SHEET 2 B 2 PRO A 401 PRO A 405 -1 O PHE A 404 N ALA A 393 SHEET 1 C 2 GLN A 424 ASP A 425 0 SHEET 2 C 2 ASP A 428 ASN A 432 -1 O ASN A 431 N ASP A 425 LINK SG CYS B 123 ZN ZN B2147 1555 1555 2.65 LINK NE2 HIS B 131 ZN ZN B2147 1555 1555 2.20 LINK SG CYS B 136 ZN ZN B2147 1555 1555 2.93 LINK SG CYS B 164 ZN ZN B2148 1555 1555 2.64 LINK SG CYS B 167 ZN ZN B2148 1555 1555 2.36 LINK NE2 HIS B 172 ZN ZN B2148 1555 1555 2.43 LINK SG CYS B 177 ZN ZN B2148 1555 1555 2.43 SITE 1 AC1 4 CYS B 123 CYS B 126 HIS B 131 CYS B 136 SITE 1 AC2 4 CYS B 164 CYS B 167 HIS B 172 CYS B 177 CRYST1 92.720 92.720 103.630 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010785 0.006227 0.000000 0.00000 SCALE2 0.000000 0.012454 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009650 0.00000