data_3NYM # _entry.id 3NYM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NYM pdb_00003nym 10.2210/pdb3nym/pdb RCSB RCSB060442 ? ? WWPDB D_1000060442 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2010-09-22 ? 2 'Structure model' 1 1 2011-07-13 ? 3 'Structure model' 1 2 2025-03-26 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' pdbx_modification_feature 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3NYM _pdbx_database_status.recvd_initial_deposition_date 2010-07-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC83772 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhang, R.' 1 'Tan, K.' 2 'Volkart, L.' 3 'Bargassa, M.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The crystal structure of functionally unknown protein from Neisseria meningitidis MC58' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhang, R.' 1 ? primary 'Tan, K.' 2 ? primary 'Volkart, L.' 3 ? primary 'Bargassa, M.' 4 ? primary 'Joachimiak, A.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'uncharacterized protein' 15120.274 2 ? ? ? ? 2 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 3 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 5 water nat water 18.015 157 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;SNA(MSE)ETLNDI(MLY)KILINVGLYQGFDLTDPKVSEEVNHETAN(MSE)(MLY)WI(MLY)DYTSDGNWDNEFKED L(MLY)NFLDY(MSE)EVCQLALND(MLY)NF(MLY)IASNSLF(MSE)A(MSE)IYAGNLSLIFDSIKTDISTLLSAEY KKNSFSWPSLDE ; _entity_poly.pdbx_seq_one_letter_code_can ;SNAMETLNDIKKILINVGLYQGFDLTDPKVSEEVNHETANMKWIKDYTSDGNWDNEFKEDLKNFLDYMEVCQLALNDKNF KIASNSLFMAMIYAGNLSLIFDSIKTDISTLLSAEYKKNSFSWPSLDE ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier APC83772 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'DI(HYDROXYETHYL)ETHER' PEG 3 'SULFATE ION' SO4 4 'ACETATE ION' ACT 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 MSE n 1 5 GLU n 1 6 THR n 1 7 LEU n 1 8 ASN n 1 9 ASP n 1 10 ILE n 1 11 MLY n 1 12 LYS n 1 13 ILE n 1 14 LEU n 1 15 ILE n 1 16 ASN n 1 17 VAL n 1 18 GLY n 1 19 LEU n 1 20 TYR n 1 21 GLN n 1 22 GLY n 1 23 PHE n 1 24 ASP n 1 25 LEU n 1 26 THR n 1 27 ASP n 1 28 PRO n 1 29 LYS n 1 30 VAL n 1 31 SER n 1 32 GLU n 1 33 GLU n 1 34 VAL n 1 35 ASN n 1 36 HIS n 1 37 GLU n 1 38 THR n 1 39 ALA n 1 40 ASN n 1 41 MSE n 1 42 MLY n 1 43 TRP n 1 44 ILE n 1 45 MLY n 1 46 ASP n 1 47 TYR n 1 48 THR n 1 49 SER n 1 50 ASP n 1 51 GLY n 1 52 ASN n 1 53 TRP n 1 54 ASP n 1 55 ASN n 1 56 GLU n 1 57 PHE n 1 58 LYS n 1 59 GLU n 1 60 ASP n 1 61 LEU n 1 62 MLY n 1 63 ASN n 1 64 PHE n 1 65 LEU n 1 66 ASP n 1 67 TYR n 1 68 MSE n 1 69 GLU n 1 70 VAL n 1 71 CYS n 1 72 GLN n 1 73 LEU n 1 74 ALA n 1 75 LEU n 1 76 ASN n 1 77 ASP n 1 78 MLY n 1 79 ASN n 1 80 PHE n 1 81 MLY n 1 82 ILE n 1 83 ALA n 1 84 SER n 1 85 ASN n 1 86 SER n 1 87 LEU n 1 88 PHE n 1 89 MSE n 1 90 ALA n 1 91 MSE n 1 92 ILE n 1 93 TYR n 1 94 ALA n 1 95 GLY n 1 96 ASN n 1 97 LEU n 1 98 SER n 1 99 LEU n 1 100 ILE n 1 101 PHE n 1 102 ASP n 1 103 SER n 1 104 ILE n 1 105 LYS n 1 106 THR n 1 107 ASP n 1 108 ILE n 1 109 SER n 1 110 THR n 1 111 LEU n 1 112 LEU n 1 113 SER n 1 114 ALA n 1 115 GLU n 1 116 TYR n 1 117 LYS n 1 118 LYS n 1 119 ASN n 1 120 SER n 1 121 PHE n 1 122 SER n 1 123 TRP n 1 124 PRO n 1 125 SER n 1 126 LEU n 1 127 ASP n 1 128 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NMB0500, NMB1774' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MC58 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Neisseria meningitidis serogroup B' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 491 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 ? ? ? A . n A 1 2 ASN 2 -1 ? ? ? A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 GLU 5 2 2 GLU GLU A . n A 1 6 THR 6 3 3 THR THR A . n A 1 7 LEU 7 4 4 LEU LEU A . n A 1 8 ASN 8 5 5 ASN ASN A . n A 1 9 ASP 9 6 6 ASP ASP A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 MLY 11 8 8 MLY MLY A . n A 1 12 LYS 12 9 9 LYS LYS A . n A 1 13 ILE 13 10 10 ILE ILE A . n A 1 14 LEU 14 11 11 LEU LEU A . n A 1 15 ILE 15 12 12 ILE ILE A . n A 1 16 ASN 16 13 13 ASN ASN A . n A 1 17 VAL 17 14 14 VAL VAL A . n A 1 18 GLY 18 15 15 GLY GLY A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 TYR 20 17 17 TYR TYR A . n A 1 21 GLN 21 18 18 GLN GLN A . n A 1 22 GLY 22 19 19 GLY GLY A . n A 1 23 PHE 23 20 20 PHE PHE A . n A 1 24 ASP 24 21 21 ASP ASP A . n A 1 25 LEU 25 22 22 LEU LEU A . n A 1 26 THR 26 23 23 THR THR A . n A 1 27 ASP 27 24 24 ASP ASP A . n A 1 28 PRO 28 25 25 PRO PRO A . n A 1 29 LYS 29 26 26 LYS LYS A . n A 1 30 VAL 30 27 27 VAL VAL A . n A 1 31 SER 31 28 28 SER SER A . n A 1 32 GLU 32 29 29 GLU GLU A . n A 1 33 GLU 33 30 30 GLU GLU A . n A 1 34 VAL 34 31 31 VAL VAL A . n A 1 35 ASN 35 32 32 ASN ASN A . n A 1 36 HIS 36 33 33 HIS HIS A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 THR 38 35 35 THR THR A . n A 1 39 ALA 39 36 36 ALA ALA A . n A 1 40 ASN 40 37 37 ASN ASN A . n A 1 41 MSE 41 38 38 MSE MSE A . n A 1 42 MLY 42 39 39 MLY MLY A . n A 1 43 TRP 43 40 40 TRP TRP A . n A 1 44 ILE 44 41 41 ILE ILE A . n A 1 45 MLY 45 42 42 MLY MLY A . n A 1 46 ASP 46 43 43 ASP ASP A . n A 1 47 TYR 47 44 44 TYR TYR A . n A 1 48 THR 48 45 45 THR THR A . n A 1 49 SER 49 46 46 SER SER A . n A 1 50 ASP 50 47 47 ASP ASP A . n A 1 51 GLY 51 48 48 GLY GLY A . n A 1 52 ASN 52 49 49 ASN ASN A . n A 1 53 TRP 53 50 50 TRP TRP A . n A 1 54 ASP 54 51 51 ASP ASP A . n A 1 55 ASN 55 52 52 ASN ASN A . n A 1 56 GLU 56 53 53 GLU GLU A . n A 1 57 PHE 57 54 54 PHE PHE A . n A 1 58 LYS 58 55 55 LYS LYS A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 ASP 60 57 57 ASP ASP A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 MLY 62 59 59 MLY MLY A . n A 1 63 ASN 63 60 60 ASN ASN A . n A 1 64 PHE 64 61 61 PHE PHE A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 ASP 66 63 63 ASP ASP A . n A 1 67 TYR 67 64 64 TYR TYR A . n A 1 68 MSE 68 65 65 MSE MSE A . n A 1 69 GLU 69 66 66 GLU GLU A . n A 1 70 VAL 70 67 67 VAL VAL A . n A 1 71 CYS 71 68 68 CYS CYS A . n A 1 72 GLN 72 69 69 GLN GLN A . n A 1 73 LEU 73 70 70 LEU LEU A . n A 1 74 ALA 74 71 71 ALA ALA A . n A 1 75 LEU 75 72 72 LEU LEU A . n A 1 76 ASN 76 73 73 ASN ASN A . n A 1 77 ASP 77 74 74 ASP ASP A . n A 1 78 MLY 78 75 75 MLY MLY A . n A 1 79 ASN 79 76 76 ASN ASN A . n A 1 80 PHE 80 77 77 PHE PHE A . n A 1 81 MLY 81 78 78 MLY MLY A . n A 1 82 ILE 82 79 79 ILE ILE A . n A 1 83 ALA 83 80 80 ALA ALA A . n A 1 84 SER 84 81 81 SER SER A . n A 1 85 ASN 85 82 82 ASN ASN A . n A 1 86 SER 86 83 83 SER SER A . n A 1 87 LEU 87 84 84 LEU LEU A . n A 1 88 PHE 88 85 85 PHE PHE A . n A 1 89 MSE 89 86 86 MSE MSE A . n A 1 90 ALA 90 87 87 ALA ALA A . n A 1 91 MSE 91 88 88 MSE MSE A . n A 1 92 ILE 92 89 89 ILE ILE A . n A 1 93 TYR 93 90 90 TYR TYR A . n A 1 94 ALA 94 91 91 ALA ALA A . n A 1 95 GLY 95 92 92 GLY GLY A . n A 1 96 ASN 96 93 93 ASN ASN A . n A 1 97 LEU 97 94 94 LEU LEU A . n A 1 98 SER 98 95 95 SER SER A . n A 1 99 LEU 99 96 96 LEU LEU A . n A 1 100 ILE 100 97 97 ILE ILE A . n A 1 101 PHE 101 98 98 PHE PHE A . n A 1 102 ASP 102 99 99 ASP ASP A . n A 1 103 SER 103 100 100 SER SER A . n A 1 104 ILE 104 101 101 ILE ILE A . n A 1 105 LYS 105 102 102 LYS LYS A . n A 1 106 THR 106 103 103 THR THR A . n A 1 107 ASP 107 104 104 ASP ASP A . n A 1 108 ILE 108 105 105 ILE ILE A . n A 1 109 SER 109 106 106 SER SER A . n A 1 110 THR 110 107 107 THR THR A . n A 1 111 LEU 111 108 108 LEU LEU A . n A 1 112 LEU 112 109 109 LEU LEU A . n A 1 113 SER 113 110 110 SER SER A . n A 1 114 ALA 114 111 111 ALA ALA A . n A 1 115 GLU 115 112 112 GLU GLU A . n A 1 116 TYR 116 113 113 TYR TYR A . n A 1 117 LYS 117 114 114 LYS LYS A . n A 1 118 LYS 118 115 115 LYS LYS A . n A 1 119 ASN 119 116 116 ASN ASN A . n A 1 120 SER 120 117 117 SER SER A . n A 1 121 PHE 121 118 118 PHE PHE A . n A 1 122 SER 122 119 119 SER SER A . n A 1 123 TRP 123 120 120 TRP TRP A . n A 1 124 PRO 124 121 121 PRO PRO A . n A 1 125 SER 125 122 122 SER SER A . n A 1 126 LEU 126 123 123 LEU LEU A . n A 1 127 ASP 127 124 ? ? ? A . n A 1 128 GLU 128 125 ? ? ? A . n B 1 1 SER 1 -2 ? ? ? B . n B 1 2 ASN 2 -1 ? ? ? B . n B 1 3 ALA 3 0 ? ? ? B . n B 1 4 MSE 4 1 ? ? ? B . n B 1 5 GLU 5 2 2 GLU GLU B . n B 1 6 THR 6 3 3 THR THR B . n B 1 7 LEU 7 4 4 LEU LEU B . n B 1 8 ASN 8 5 5 ASN ASN B . n B 1 9 ASP 9 6 6 ASP ASP B . n B 1 10 ILE 10 7 7 ILE ILE B . n B 1 11 MLY 11 8 8 MLY MLY B . n B 1 12 LYS 12 9 9 LYS LYS B . n B 1 13 ILE 13 10 10 ILE ILE B . n B 1 14 LEU 14 11 11 LEU LEU B . n B 1 15 ILE 15 12 12 ILE ILE B . n B 1 16 ASN 16 13 13 ASN ASN B . n B 1 17 VAL 17 14 14 VAL VAL B . n B 1 18 GLY 18 15 15 GLY GLY B . n B 1 19 LEU 19 16 16 LEU LEU B . n B 1 20 TYR 20 17 17 TYR TYR B . n B 1 21 GLN 21 18 18 GLN GLN B . n B 1 22 GLY 22 19 19 GLY GLY B . n B 1 23 PHE 23 20 20 PHE PHE B . n B 1 24 ASP 24 21 21 ASP ASP B . n B 1 25 LEU 25 22 22 LEU LEU B . n B 1 26 THR 26 23 23 THR THR B . n B 1 27 ASP 27 24 24 ASP ASP B . n B 1 28 PRO 28 25 25 PRO PRO B . n B 1 29 LYS 29 26 26 LYS LYS B . n B 1 30 VAL 30 27 27 VAL VAL B . n B 1 31 SER 31 28 28 SER SER B . n B 1 32 GLU 32 29 29 GLU GLU B . n B 1 33 GLU 33 30 30 GLU GLU B . n B 1 34 VAL 34 31 31 VAL VAL B . n B 1 35 ASN 35 32 32 ASN ASN B . n B 1 36 HIS 36 33 33 HIS HIS B . n B 1 37 GLU 37 34 34 GLU GLU B . n B 1 38 THR 38 35 35 THR THR B . n B 1 39 ALA 39 36 36 ALA ALA B . n B 1 40 ASN 40 37 37 ASN ASN B . n B 1 41 MSE 41 38 38 MSE MSE B . n B 1 42 MLY 42 39 39 MLY MLY B . n B 1 43 TRP 43 40 40 TRP TRP B . n B 1 44 ILE 44 41 41 ILE ILE B . n B 1 45 MLY 45 42 42 MLY MLY B . n B 1 46 ASP 46 43 43 ASP ASP B . n B 1 47 TYR 47 44 44 TYR TYR B . n B 1 48 THR 48 45 45 THR THR B . n B 1 49 SER 49 46 46 SER SER B . n B 1 50 ASP 50 47 47 ASP ASP B . n B 1 51 GLY 51 48 48 GLY GLY B . n B 1 52 ASN 52 49 49 ASN ASN B . n B 1 53 TRP 53 50 50 TRP TRP B . n B 1 54 ASP 54 51 51 ASP ASP B . n B 1 55 ASN 55 52 52 ASN ASN B . n B 1 56 GLU 56 53 53 GLU GLU B . n B 1 57 PHE 57 54 54 PHE PHE B . n B 1 58 LYS 58 55 55 LYS LYS B . n B 1 59 GLU 59 56 56 GLU GLU B . n B 1 60 ASP 60 57 57 ASP ASP B . n B 1 61 LEU 61 58 58 LEU LEU B . n B 1 62 MLY 62 59 59 MLY MLY B . n B 1 63 ASN 63 60 60 ASN ASN B . n B 1 64 PHE 64 61 61 PHE PHE B . n B 1 65 LEU 65 62 62 LEU LEU B . n B 1 66 ASP 66 63 63 ASP ASP B . n B 1 67 TYR 67 64 64 TYR TYR B . n B 1 68 MSE 68 65 65 MSE MSE B . n B 1 69 GLU 69 66 66 GLU GLU B . n B 1 70 VAL 70 67 67 VAL VAL B . n B 1 71 CYS 71 68 68 CYS CYS B . n B 1 72 GLN 72 69 69 GLN GLN B . n B 1 73 LEU 73 70 70 LEU LEU B . n B 1 74 ALA 74 71 71 ALA ALA B . n B 1 75 LEU 75 72 72 LEU LEU B . n B 1 76 ASN 76 73 73 ASN ASN B . n B 1 77 ASP 77 74 74 ASP ASP B . n B 1 78 MLY 78 75 75 MLY MLY B . n B 1 79 ASN 79 76 76 ASN ASN B . n B 1 80 PHE 80 77 77 PHE PHE B . n B 1 81 MLY 81 78 78 MLY MLY B . n B 1 82 ILE 82 79 79 ILE ILE B . n B 1 83 ALA 83 80 80 ALA ALA B . n B 1 84 SER 84 81 81 SER SER B . n B 1 85 ASN 85 82 82 ASN ASN B . n B 1 86 SER 86 83 83 SER SER B . n B 1 87 LEU 87 84 84 LEU LEU B . n B 1 88 PHE 88 85 85 PHE PHE B . n B 1 89 MSE 89 86 86 MSE MSE B . n B 1 90 ALA 90 87 87 ALA ALA B . n B 1 91 MSE 91 88 88 MSE MSE B . n B 1 92 ILE 92 89 89 ILE ILE B . n B 1 93 TYR 93 90 90 TYR TYR B . n B 1 94 ALA 94 91 91 ALA ALA B . n B 1 95 GLY 95 92 92 GLY GLY B . n B 1 96 ASN 96 93 93 ASN ASN B . n B 1 97 LEU 97 94 94 LEU LEU B . n B 1 98 SER 98 95 95 SER SER B . n B 1 99 LEU 99 96 96 LEU LEU B . n B 1 100 ILE 100 97 97 ILE ILE B . n B 1 101 PHE 101 98 98 PHE PHE B . n B 1 102 ASP 102 99 99 ASP ASP B . n B 1 103 SER 103 100 100 SER SER B . n B 1 104 ILE 104 101 101 ILE ILE B . n B 1 105 LYS 105 102 102 LYS LYS B . n B 1 106 THR 106 103 103 THR THR B . n B 1 107 ASP 107 104 104 ASP ASP B . n B 1 108 ILE 108 105 105 ILE ILE B . n B 1 109 SER 109 106 106 SER SER B . n B 1 110 THR 110 107 107 THR THR B . n B 1 111 LEU 111 108 108 LEU LEU B . n B 1 112 LEU 112 109 109 LEU LEU B . n B 1 113 SER 113 110 110 SER SER B . n B 1 114 ALA 114 111 111 ALA ALA B . n B 1 115 GLU 115 112 112 GLU GLU B . n B 1 116 TYR 116 113 113 TYR TYR B . n B 1 117 LYS 117 114 114 LYS LYS B . n B 1 118 LYS 118 115 115 LYS LYS B . n B 1 119 ASN 119 116 116 ASN ASN B . n B 1 120 SER 120 117 117 SER SER B . n B 1 121 PHE 121 118 118 PHE PHE B . n B 1 122 SER 122 119 119 SER SER B . n B 1 123 TRP 123 120 120 TRP TRP B . n B 1 124 PRO 124 121 121 PRO PRO B . n B 1 125 SER 125 122 122 SER SER B . n B 1 126 LEU 126 123 123 LEU LEU B . n B 1 127 ASP 127 124 124 ASP ASP B . n B 1 128 GLU 128 125 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEG 1 126 1 PEG PEG A . D 2 PEG 1 127 2 PEG PEG A . E 3 SO4 1 128 2 SO4 SO4 A . F 2 PEG 1 126 3 PEG PEG B . G 3 SO4 1 127 1 SO4 SO4 B . H 4 ACT 1 128 1 ACT ACT B . I 5 HOH 1 129 129 HOH HOH A . I 5 HOH 2 130 130 HOH HOH A . I 5 HOH 3 131 131 HOH HOH A . I 5 HOH 4 132 132 HOH HOH A . I 5 HOH 5 133 133 HOH HOH A . I 5 HOH 6 134 2 HOH HOH A . I 5 HOH 7 135 135 HOH HOH A . I 5 HOH 8 136 136 HOH HOH A . I 5 HOH 9 137 137 HOH HOH A . I 5 HOH 10 138 138 HOH HOH A . I 5 HOH 11 139 5 HOH HOH A . I 5 HOH 12 140 7 HOH HOH A . I 5 HOH 13 141 141 HOH HOH A . I 5 HOH 14 142 142 HOH HOH A . I 5 HOH 15 143 13 HOH HOH A . I 5 HOH 16 144 144 HOH HOH A . I 5 HOH 17 145 17 HOH HOH A . I 5 HOH 18 146 19 HOH HOH A . I 5 HOH 19 147 147 HOH HOH A . I 5 HOH 20 148 24 HOH HOH A . I 5 HOH 21 149 149 HOH HOH A . I 5 HOH 22 150 150 HOH HOH A . I 5 HOH 23 151 34 HOH HOH A . I 5 HOH 24 152 152 HOH HOH A . I 5 HOH 25 153 36 HOH HOH A . I 5 HOH 26 154 38 HOH HOH A . I 5 HOH 27 155 42 HOH HOH A . I 5 HOH 28 156 156 HOH HOH A . I 5 HOH 29 157 157 HOH HOH A . I 5 HOH 30 158 50 HOH HOH A . I 5 HOH 31 159 52 HOH HOH A . I 5 HOH 32 160 53 HOH HOH A . I 5 HOH 33 161 58 HOH HOH A . I 5 HOH 34 162 60 HOH HOH A . I 5 HOH 35 163 63 HOH HOH A . I 5 HOH 36 164 64 HOH HOH A . I 5 HOH 37 165 66 HOH HOH A . I 5 HOH 38 166 68 HOH HOH A . I 5 HOH 39 167 69 HOH HOH A . I 5 HOH 40 168 73 HOH HOH A . I 5 HOH 41 169 80 HOH HOH A . I 5 HOH 42 170 81 HOH HOH A . I 5 HOH 43 171 83 HOH HOH A . I 5 HOH 44 172 85 HOH HOH A . I 5 HOH 45 173 87 HOH HOH A . I 5 HOH 46 174 90 HOH HOH A . I 5 HOH 47 175 92 HOH HOH A . I 5 HOH 48 176 93 HOH HOH A . I 5 HOH 49 177 96 HOH HOH A . I 5 HOH 50 178 97 HOH HOH A . I 5 HOH 51 179 99 HOH HOH A . I 5 HOH 52 180 100 HOH HOH A . I 5 HOH 53 181 104 HOH HOH A . I 5 HOH 54 182 106 HOH HOH A . I 5 HOH 55 183 112 HOH HOH A . I 5 HOH 56 184 113 HOH HOH A . I 5 HOH 57 185 115 HOH HOH A . I 5 HOH 58 186 116 HOH HOH A . I 5 HOH 59 187 120 HOH HOH A . I 5 HOH 60 188 126 HOH HOH A . I 5 HOH 61 189 128 HOH HOH A . J 5 HOH 1 129 1 HOH HOH B . J 5 HOH 2 130 3 HOH HOH B . J 5 HOH 3 131 4 HOH HOH B . J 5 HOH 4 132 6 HOH HOH B . J 5 HOH 5 133 8 HOH HOH B . J 5 HOH 6 134 134 HOH HOH B . J 5 HOH 7 135 9 HOH HOH B . J 5 HOH 8 136 10 HOH HOH B . J 5 HOH 9 137 11 HOH HOH B . J 5 HOH 10 138 12 HOH HOH B . J 5 HOH 11 139 139 HOH HOH B . J 5 HOH 12 140 140 HOH HOH B . J 5 HOH 13 141 14 HOH HOH B . J 5 HOH 14 142 15 HOH HOH B . J 5 HOH 15 143 143 HOH HOH B . J 5 HOH 16 144 16 HOH HOH B . J 5 HOH 17 145 145 HOH HOH B . J 5 HOH 18 146 146 HOH HOH B . J 5 HOH 19 147 18 HOH HOH B . J 5 HOH 20 148 148 HOH HOH B . J 5 HOH 21 149 20 HOH HOH B . J 5 HOH 22 150 21 HOH HOH B . J 5 HOH 23 151 151 HOH HOH B . J 5 HOH 24 152 22 HOH HOH B . J 5 HOH 25 153 153 HOH HOH B . J 5 HOH 26 154 154 HOH HOH B . J 5 HOH 27 155 155 HOH HOH B . J 5 HOH 28 156 23 HOH HOH B . J 5 HOH 29 157 25 HOH HOH B . J 5 HOH 30 158 26 HOH HOH B . J 5 HOH 31 159 27 HOH HOH B . J 5 HOH 32 160 28 HOH HOH B . J 5 HOH 33 161 29 HOH HOH B . J 5 HOH 34 162 30 HOH HOH B . J 5 HOH 35 163 31 HOH HOH B . J 5 HOH 36 164 32 HOH HOH B . J 5 HOH 37 165 33 HOH HOH B . J 5 HOH 38 166 35 HOH HOH B . J 5 HOH 39 167 37 HOH HOH B . J 5 HOH 40 168 39 HOH HOH B . J 5 HOH 41 169 40 HOH HOH B . J 5 HOH 42 170 41 HOH HOH B . J 5 HOH 43 171 43 HOH HOH B . J 5 HOH 44 172 44 HOH HOH B . J 5 HOH 45 173 45 HOH HOH B . J 5 HOH 46 174 46 HOH HOH B . J 5 HOH 47 175 47 HOH HOH B . J 5 HOH 48 176 48 HOH HOH B . J 5 HOH 49 177 49 HOH HOH B . J 5 HOH 50 178 51 HOH HOH B . J 5 HOH 51 179 54 HOH HOH B . J 5 HOH 52 180 55 HOH HOH B . J 5 HOH 53 181 56 HOH HOH B . J 5 HOH 54 182 57 HOH HOH B . J 5 HOH 55 183 59 HOH HOH B . J 5 HOH 56 184 61 HOH HOH B . J 5 HOH 57 185 62 HOH HOH B . J 5 HOH 58 186 65 HOH HOH B . J 5 HOH 59 187 67 HOH HOH B . J 5 HOH 60 188 70 HOH HOH B . J 5 HOH 61 189 71 HOH HOH B . J 5 HOH 62 190 72 HOH HOH B . J 5 HOH 63 191 74 HOH HOH B . J 5 HOH 64 192 75 HOH HOH B . J 5 HOH 65 193 76 HOH HOH B . J 5 HOH 66 194 77 HOH HOH B . J 5 HOH 67 195 78 HOH HOH B . J 5 HOH 68 196 79 HOH HOH B . J 5 HOH 69 197 82 HOH HOH B . J 5 HOH 70 198 84 HOH HOH B . J 5 HOH 71 199 86 HOH HOH B . J 5 HOH 72 200 88 HOH HOH B . J 5 HOH 73 201 89 HOH HOH B . J 5 HOH 74 202 91 HOH HOH B . J 5 HOH 75 203 94 HOH HOH B . J 5 HOH 76 204 95 HOH HOH B . J 5 HOH 77 205 98 HOH HOH B . J 5 HOH 78 206 101 HOH HOH B . J 5 HOH 79 207 102 HOH HOH B . J 5 HOH 80 208 103 HOH HOH B . J 5 HOH 81 209 105 HOH HOH B . J 5 HOH 82 210 107 HOH HOH B . J 5 HOH 83 211 108 HOH HOH B . J 5 HOH 84 212 109 HOH HOH B . J 5 HOH 85 213 110 HOH HOH B . J 5 HOH 86 214 111 HOH HOH B . J 5 HOH 87 215 114 HOH HOH B . J 5 HOH 88 216 117 HOH HOH B . J 5 HOH 89 217 118 HOH HOH B . J 5 HOH 90 218 119 HOH HOH B . J 5 HOH 91 219 121 HOH HOH B . J 5 HOH 92 220 122 HOH HOH B . J 5 HOH 93 221 123 HOH HOH B . J 5 HOH 94 222 124 HOH HOH B . J 5 HOH 95 223 125 HOH HOH B . J 5 HOH 96 224 127 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SBC-Collect 'data collection' . ? 1 SHELXD phasing . ? 2 MLPHARE phasing . ? 3 DM 'model building' . ? 4 ARP 'model building' . ? 5 WARP 'model building' . ? 6 HKL-3000 phasing . ? 7 PHENIX refinement '(phenix.refine: 1.5_2)' ? 8 HKL-3000 'data reduction' . ? 9 HKL-3000 'data scaling' . ? 10 DM phasing . ? 11 # _cell.entry_id 3NYM _cell.length_a 43.646 _cell.length_b 35.741 _cell.length_c 101.565 _cell.angle_alpha 90.00 _cell.angle_beta 95.79 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3NYM _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3NYM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_percent_sol 52.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.2M Ammonium sulfate, 0.1M Bis-Tris, 25% w/v PEG3350, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2009-07-15 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97929 # _reflns.entry_id 3NYM _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 34.0 _reflns.d_resolution_high 1.90 _reflns.number_obs 24360 _reflns.number_all 24360 _reflns.percent_possible_obs 97.4 _reflns.pdbx_Rmerge_I_obs 0.099 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.6 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_all 84.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1034 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3NYM _refine.ls_number_reflns_obs 22860 _refine.ls_number_reflns_all 22860 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.682 _refine.ls_d_res_high 1.900 _refine.ls_percent_reflns_obs 91.40 _refine.ls_R_factor_obs 0.1745 _refine.ls_R_factor_all 0.1745 _refine.ls_R_factor_R_work 0.1726 _refine.ls_R_factor_R_free 0.2082 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.15 _refine.ls_number_reflns_R_free 1178 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -5.7972 _refine.aniso_B[2][2] 14.4827 _refine.aniso_B[3][3] -8.6855 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.5180 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.317 _refine.solvent_model_param_bsol 39.974 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.21 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2023 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 157 _refine_hist.number_atoms_total 2215 _refine_hist.d_res_high 1.900 _refine_hist.d_res_low 33.682 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.006 ? ? 2103 'X-RAY DIFFRACTION' ? f_angle_d 0.922 ? ? 2839 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.401 ? ? 765 'X-RAY DIFFRACTION' ? f_chiral_restr 0.068 ? ? 309 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 351 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.8999 1.9864 2156 0.2585 74.00 0.3422 . . 127 . . . . 'X-RAY DIFFRACTION' . 1.9864 2.0911 2477 0.2154 85.00 0.2607 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.0911 2.2221 2633 0.1826 90.00 0.2521 . . 138 . . . . 'X-RAY DIFFRACTION' . 2.2221 2.3936 2733 0.1768 92.00 0.2313 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.3936 2.6344 2813 0.1745 95.00 0.2091 . . 132 . . . . 'X-RAY DIFFRACTION' . 2.6344 3.0154 2892 0.1826 97.00 0.2366 . . 155 . . . . 'X-RAY DIFFRACTION' . 3.0154 3.7983 2939 0.1694 99.00 0.2129 . . 167 . . . . 'X-RAY DIFFRACTION' . 3.7983 33.6877 3039 0.1463 99.00 0.1528 . . 172 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3NYM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3NYM _struct.title 'The crystal structure of functionally unknown protein from Neisseria meningitidis MC58' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NYM _struct_keywords.pdbx_keywords 'structural genomics, unknown function' _struct_keywords.text 'structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, unknown function' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 5 ? J N N 5 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9JS17_NEIMB _struct_ref.pdbx_db_accession Q9JS17 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;METLNDIKKILINVGLYQGFDLTDPKVSEEVNHETANMKWIKDYTSDGNWDNEFKEDLKNFLDYMEVCQLALNDKNFKIA SNSLFMAMIYAGNLSLIFDSIKTDISTLLSAEYKKNSFSWPSLDE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NYM A 4 ? 128 ? Q9JS17 1 ? 125 ? 1 125 2 1 3NYM B 4 ? 128 ? Q9JS17 1 ? 125 ? 1 125 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3NYM SER A 1 ? UNP Q9JS17 ? ? 'expression tag' -2 1 1 3NYM ASN A 2 ? UNP Q9JS17 ? ? 'expression tag' -1 2 1 3NYM ALA A 3 ? UNP Q9JS17 ? ? 'expression tag' 0 3 2 3NYM SER B 1 ? UNP Q9JS17 ? ? 'expression tag' -2 4 2 3NYM ASN B 2 ? UNP Q9JS17 ? ? 'expression tag' -1 5 2 3NYM ALA B 3 ? UNP Q9JS17 ? ? 'expression tag' 0 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5500 ? 1 MORE -84 ? 1 'SSA (A^2)' 12770 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details 'Experimentally unknown. The chains A and B are predicted to form a dimer.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 6 ? GLN A 21 ? THR A 3 GLN A 18 1 ? 16 HELX_P HELX_P2 2 ASP A 27 ? GLU A 32 ? ASP A 24 GLU A 29 1 ? 6 HELX_P HELX_P3 3 ASN A 52 ? ASP A 77 ? ASN A 49 ASP A 74 1 ? 26 HELX_P HELX_P4 4 ASN A 79 ? ALA A 114 ? ASN A 76 ALA A 111 1 ? 36 HELX_P HELX_P5 5 GLU B 5 ? GLN B 21 ? GLU B 2 GLN B 18 1 ? 17 HELX_P HELX_P6 6 ASP B 27 ? GLU B 32 ? ASP B 24 GLU B 29 1 ? 6 HELX_P HELX_P7 7 ASN B 52 ? ASP B 77 ? ASN B 49 ASP B 74 1 ? 26 HELX_P HELX_P8 8 ASN B 79 ? ALA B 114 ? ASN B 76 ALA B 111 1 ? 36 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 3 C ? ? ? 1_555 A MSE 4 N ? ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? A MSE 4 C ? ? ? 1_555 A GLU 5 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? A ILE 10 C ? ? ? 1_555 A MLY 11 N ? ? A ILE 7 A MLY 8 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A MLY 11 C ? ? ? 1_555 A LYS 12 N ? ? A MLY 8 A LYS 9 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A ASN 40 C ? ? ? 1_555 A MSE 41 N ? ? A ASN 37 A MSE 38 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale6 covale both ? A MSE 41 C ? ? ? 1_555 A MLY 42 N ? ? A MSE 38 A MLY 39 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A MLY 42 C ? ? ? 1_555 A TRP 43 N ? ? A MLY 39 A TRP 40 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale8 covale both ? A ILE 44 C ? ? ? 1_555 A MLY 45 N ? ? A ILE 41 A MLY 42 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale9 covale both ? A MLY 45 C ? ? ? 1_555 A ASP 46 N ? ? A MLY 42 A ASP 43 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale10 covale both ? A LEU 61 C ? ? ? 1_555 A MLY 62 N ? ? A LEU 58 A MLY 59 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? A MLY 62 C ? ? ? 1_555 A ASN 63 N ? ? A MLY 59 A ASN 60 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale12 covale both ? A TYR 67 C ? ? ? 1_555 A MSE 68 N ? ? A TYR 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale13 covale both ? A MSE 68 C ? ? ? 1_555 A GLU 69 N ? ? A MSE 65 A GLU 66 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale14 covale both ? A ASP 77 C ? ? ? 1_555 A MLY 78 N ? ? A ASP 74 A MLY 75 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale15 covale both ? A MLY 78 C ? ? ? 1_555 A ASN 79 N ? ? A MLY 75 A ASN 76 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale16 covale both ? A PHE 80 C ? ? ? 1_555 A MLY 81 N ? ? A PHE 77 A MLY 78 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale17 covale both ? A MLY 81 C ? ? ? 1_555 A ILE 82 N ? ? A MLY 78 A ILE 79 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale18 covale both ? A PHE 88 C ? ? ? 1_555 A MSE 89 N ? ? A PHE 85 A MSE 86 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale19 covale both ? A MSE 89 C ? ? ? 1_555 A ALA 90 N ? ? A MSE 86 A ALA 87 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale20 covale both ? A ALA 90 C ? ? ? 1_555 A MSE 91 N ? ? A ALA 87 A MSE 88 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale21 covale both ? A MSE 91 C ? ? ? 1_555 A ILE 92 N ? ? A MSE 88 A ILE 89 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale22 covale both ? B ILE 10 C ? ? ? 1_555 B MLY 11 N ? ? B ILE 7 B MLY 8 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale23 covale both ? B MLY 11 C ? ? ? 1_555 B LYS 12 N ? ? B MLY 8 B LYS 9 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale24 covale both ? B ASN 40 C ? ? ? 1_555 B MSE 41 N ? ? B ASN 37 B MSE 38 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale25 covale both ? B MSE 41 C ? ? ? 1_555 B MLY 42 N ? ? B MSE 38 B MLY 39 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale26 covale both ? B MLY 42 C ? ? ? 1_555 B TRP 43 N ? ? B MLY 39 B TRP 40 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale27 covale both ? B ILE 44 C ? ? ? 1_555 B MLY 45 N ? ? B ILE 41 B MLY 42 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale28 covale both ? B MLY 45 C ? ? ? 1_555 B ASP 46 N ? ? B MLY 42 B ASP 43 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale29 covale both ? B LEU 61 C ? ? ? 1_555 B MLY 62 N ? ? B LEU 58 B MLY 59 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale30 covale both ? B MLY 62 C ? ? ? 1_555 B ASN 63 N ? ? B MLY 59 B ASN 60 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale31 covale both ? B TYR 67 C ? ? ? 1_555 B MSE 68 N ? ? B TYR 64 B MSE 65 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale32 covale both ? B MSE 68 C ? ? ? 1_555 B GLU 69 N ? ? B MSE 65 B GLU 66 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale33 covale both ? B ASP 77 C ? ? ? 1_555 B MLY 78 N ? ? B ASP 74 B MLY 75 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale34 covale both ? B MLY 78 C ? ? ? 1_555 B ASN 79 N ? ? B MLY 75 B ASN 76 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale35 covale both ? B PHE 80 C ? ? ? 1_555 B MLY 81 N ? ? B PHE 77 B MLY 78 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale36 covale both ? B MLY 81 C ? ? ? 1_555 B ILE 82 N ? ? B MLY 78 B ILE 79 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale37 covale both ? B PHE 88 C ? ? ? 1_555 B MSE 89 N ? ? B PHE 85 B MSE 86 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale38 covale both ? B MSE 89 C ? ? ? 1_555 B ALA 90 N ? ? B MSE 86 B ALA 87 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale39 covale both ? B ALA 90 C ? ? ? 1_555 B MSE 91 N ? ? B ALA 87 B MSE 88 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale40 covale both ? B MSE 91 C ? ? ? 1_555 B ILE 92 N ? ? B MSE 88 B ILE 89 1_555 ? ? ? ? ? ? ? 1.333 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 4 ? . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MLY A 11 ? . . . . MLY A 8 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 3 MSE A 41 ? . . . . MSE A 38 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MLY A 42 ? . . . . MLY A 39 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 5 MLY A 45 ? . . . . MLY A 42 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 6 MLY A 62 ? . . . . MLY A 59 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 7 MSE A 68 ? . . . . MSE A 65 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 8 MLY A 78 ? . . . . MLY A 75 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 9 MLY A 81 ? . . . . MLY A 78 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 10 MSE A 89 ? . . . . MSE A 86 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 11 MSE A 91 ? . . . . MSE A 88 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 12 MLY B 11 ? . . . . MLY B 8 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 13 MSE B 41 ? . . . . MSE B 38 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 14 MLY B 42 ? . . . . MLY B 39 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 15 MLY B 45 ? . . . . MLY B 42 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 16 MLY B 62 ? . . . . MLY B 59 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 17 MSE B 68 ? . . . . MSE B 65 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 18 MLY B 78 ? . . . . MLY B 75 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 19 MLY B 81 ? . . . . MLY B 78 ? 1_555 . . . . . . . LYS 1 MLY Methylation 'Named protein modification' 20 MSE B 89 ? . . . . MSE B 86 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 21 MSE B 91 ? . . . . MSE B 88 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 34 ? ASN A 35 ? VAL A 31 ASN A 32 A 2 ASN A 40 ? MSE A 41 ? ASN A 37 MSE A 38 B 1 VAL B 34 ? ASN B 35 ? VAL B 31 ASN B 32 B 2 ASN B 40 ? MSE B 41 ? ASN B 37 MSE B 38 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 35 ? N ASN A 32 O ASN A 40 ? O ASN A 37 B 1 2 N ASN B 35 ? N ASN B 32 O ASN B 40 ? O ASN B 37 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PEG 126 ? 1 'BINDING SITE FOR RESIDUE PEG A 126' AC2 Software A PEG 127 ? 5 'BINDING SITE FOR RESIDUE PEG A 127' AC3 Software A SO4 128 ? 4 'BINDING SITE FOR RESIDUE SO4 A 128' AC4 Software B PEG 126 ? 6 'BINDING SITE FOR RESIDUE PEG B 126' AC5 Software B SO4 127 ? 4 'BINDING SITE FOR RESIDUE SO4 B 127' AC6 Software B ACT 128 ? 3 'BINDING SITE FOR RESIDUE ACT B 128' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 LEU A 19 ? LEU A 16 . ? 1_555 ? 2 AC2 5 ASP A 77 ? ASP A 74 . ? 1_555 ? 3 AC2 5 ASN A 79 ? ASN A 76 . ? 1_555 ? 4 AC2 5 GLU B 59 ? GLU B 56 . ? 1_455 ? 5 AC2 5 ASN B 63 ? ASN B 60 . ? 1_455 ? 6 AC2 5 HOH J . ? HOH B 219 . ? 1_455 ? 7 AC3 4 MLY A 78 ? MLY A 75 . ? 1_555 ? 8 AC3 4 ASN A 79 ? ASN A 76 . ? 1_555 ? 9 AC3 4 PHE A 80 ? PHE A 77 . ? 1_555 ? 10 AC3 4 MLY A 81 ? MLY A 78 . ? 1_555 ? 11 AC4 6 PHE A 121 ? PHE A 118 . ? 1_555 ? 12 AC4 6 SER A 122 ? SER A 119 . ? 1_555 ? 13 AC4 6 PRO A 124 ? PRO A 121 . ? 1_555 ? 14 AC4 6 HOH I . ? HOH A 178 . ? 1_555 ? 15 AC4 6 PHE B 80 ? PHE B 77 . ? 1_555 ? 16 AC4 6 HOH J . ? HOH B 208 . ? 1_555 ? 17 AC5 4 MLY B 78 ? MLY B 75 . ? 1_555 ? 18 AC5 4 ASN B 79 ? ASN B 76 . ? 1_555 ? 19 AC5 4 PHE B 80 ? PHE B 77 . ? 1_555 ? 20 AC5 4 MLY B 81 ? MLY B 78 . ? 1_555 ? 21 AC6 3 ASP B 54 ? ASP B 51 . ? 1_555 ? 22 AC6 3 PHE B 57 ? PHE B 54 . ? 1_555 ? 23 AC6 3 LYS B 58 ? LYS B 55 . ? 1_555 ? # _pdbx_entry_details.entry_id 3NYM _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 116 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -126.93 _pdbx_validate_torsion.psi -155.09 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 4 A MSE 1 ? MET SELENOMETHIONINE 2 A MLY 11 A MLY 8 ? LYS N-DIMETHYL-LYSINE 3 A MSE 41 A MSE 38 ? MET SELENOMETHIONINE 4 A MLY 42 A MLY 39 ? LYS N-DIMETHYL-LYSINE 5 A MLY 45 A MLY 42 ? LYS N-DIMETHYL-LYSINE 6 A MLY 62 A MLY 59 ? LYS N-DIMETHYL-LYSINE 7 A MSE 68 A MSE 65 ? MET SELENOMETHIONINE 8 A MLY 78 A MLY 75 ? LYS N-DIMETHYL-LYSINE 9 A MLY 81 A MLY 78 ? LYS N-DIMETHYL-LYSINE 10 A MSE 89 A MSE 86 ? MET SELENOMETHIONINE 11 A MSE 91 A MSE 88 ? MET SELENOMETHIONINE 12 B MLY 11 B MLY 8 ? LYS N-DIMETHYL-LYSINE 13 B MSE 41 B MSE 38 ? MET SELENOMETHIONINE 14 B MLY 42 B MLY 39 ? LYS N-DIMETHYL-LYSINE 15 B MLY 45 B MLY 42 ? LYS N-DIMETHYL-LYSINE 16 B MLY 62 B MLY 59 ? LYS N-DIMETHYL-LYSINE 17 B MSE 68 B MSE 65 ? MET SELENOMETHIONINE 18 B MLY 78 B MLY 75 ? LYS N-DIMETHYL-LYSINE 19 B MLY 81 B MLY 78 ? LYS N-DIMETHYL-LYSINE 20 B MSE 89 B MSE 86 ? MET SELENOMETHIONINE 21 B MSE 91 B MSE 88 ? MET SELENOMETHIONINE # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 12.4360 10.7493 33.5240 0.1991 0.2809 0.1906 -0.0003 0.0216 0.0075 0.9152 0.3885 0.8870 0.0502 0.5011 0.0771 0.0318 -0.3038 -0.0374 0.0425 0.0040 -0.0021 -0.0584 -0.1199 -0.0254 'X-RAY DIFFRACTION' 2 ? refined 11.8985 8.5877 16.0278 0.2158 0.1863 0.2029 0.0120 0.0001 -0.0081 0.9514 0.1003 0.9556 -0.0084 0.5695 -0.0530 0.0272 0.0241 -0.0557 -0.0449 0.0016 0.0037 -0.0236 0.1168 -0.0261 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'chain A' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'chain B' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -2 ? A SER 1 2 1 Y 1 A ASN -1 ? A ASN 2 3 1 Y 1 A ASP 124 ? A ASP 127 4 1 Y 1 A GLU 125 ? A GLU 128 5 1 Y 1 B SER -2 ? B SER 1 6 1 Y 1 B ASN -1 ? B ASN 2 7 1 Y 1 B ALA 0 ? B ALA 3 8 1 Y 1 B MSE 1 ? B MSE 4 9 1 Y 1 B GLU 125 ? B GLU 128 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACT C C N N 1 ACT O O N N 2 ACT OXT O N N 3 ACT CH3 C N N 4 ACT H1 H N N 5 ACT H2 H N N 6 ACT H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ASN N N N N 21 ASN CA C N S 22 ASN C C N N 23 ASN O O N N 24 ASN CB C N N 25 ASN CG C N N 26 ASN OD1 O N N 27 ASN ND2 N N N 28 ASN OXT O N N 29 ASN H H N N 30 ASN H2 H N N 31 ASN HA H N N 32 ASN HB2 H N N 33 ASN HB3 H N N 34 ASN HD21 H N N 35 ASN HD22 H N N 36 ASN HXT H N N 37 ASP N N N N 38 ASP CA C N S 39 ASP C C N N 40 ASP O O N N 41 ASP CB C N N 42 ASP CG C N N 43 ASP OD1 O N N 44 ASP OD2 O N N 45 ASP OXT O N N 46 ASP H H N N 47 ASP H2 H N N 48 ASP HA H N N 49 ASP HB2 H N N 50 ASP HB3 H N N 51 ASP HD2 H N N 52 ASP HXT H N N 53 CYS N N N N 54 CYS CA C N R 55 CYS C C N N 56 CYS O O N N 57 CYS CB C N N 58 CYS SG S N N 59 CYS OXT O N N 60 CYS H H N N 61 CYS H2 H N N 62 CYS HA H N N 63 CYS HB2 H N N 64 CYS HB3 H N N 65 CYS HG H N N 66 CYS HXT H N N 67 GLN N N N N 68 GLN CA C N S 69 GLN C C N N 70 GLN O O N N 71 GLN CB C N N 72 GLN CG C N N 73 GLN CD C N N 74 GLN OE1 O N N 75 GLN NE2 N N N 76 GLN OXT O N N 77 GLN H H N N 78 GLN H2 H N N 79 GLN HA H N N 80 GLN HB2 H N N 81 GLN HB3 H N N 82 GLN HG2 H N N 83 GLN HG3 H N N 84 GLN HE21 H N N 85 GLN HE22 H N N 86 GLN HXT H N N 87 GLU N N N N 88 GLU CA C N S 89 GLU C C N N 90 GLU O O N N 91 GLU CB C N N 92 GLU CG C N N 93 GLU CD C N N 94 GLU OE1 O N N 95 GLU OE2 O N N 96 GLU OXT O N N 97 GLU H H N N 98 GLU H2 H N N 99 GLU HA H N N 100 GLU HB2 H N N 101 GLU HB3 H N N 102 GLU HG2 H N N 103 GLU HG3 H N N 104 GLU HE2 H N N 105 GLU HXT H N N 106 GLY N N N N 107 GLY CA C N N 108 GLY C C N N 109 GLY O O N N 110 GLY OXT O N N 111 GLY H H N N 112 GLY H2 H N N 113 GLY HA2 H N N 114 GLY HA3 H N N 115 GLY HXT H N N 116 HIS N N N N 117 HIS CA C N S 118 HIS C C N N 119 HIS O O N N 120 HIS CB C N N 121 HIS CG C Y N 122 HIS ND1 N Y N 123 HIS CD2 C Y N 124 HIS CE1 C Y N 125 HIS NE2 N Y N 126 HIS OXT O N N 127 HIS H H N N 128 HIS H2 H N N 129 HIS HA H N N 130 HIS HB2 H N N 131 HIS HB3 H N N 132 HIS HD1 H N N 133 HIS HD2 H N N 134 HIS HE1 H N N 135 HIS HE2 H N N 136 HIS HXT H N N 137 HOH O O N N 138 HOH H1 H N N 139 HOH H2 H N N 140 ILE N N N N 141 ILE CA C N S 142 ILE C C N N 143 ILE O O N N 144 ILE CB C N S 145 ILE CG1 C N N 146 ILE CG2 C N N 147 ILE CD1 C N N 148 ILE OXT O N N 149 ILE H H N N 150 ILE H2 H N N 151 ILE HA H N N 152 ILE HB H N N 153 ILE HG12 H N N 154 ILE HG13 H N N 155 ILE HG21 H N N 156 ILE HG22 H N N 157 ILE HG23 H N N 158 ILE HD11 H N N 159 ILE HD12 H N N 160 ILE HD13 H N N 161 ILE HXT H N N 162 LEU N N N N 163 LEU CA C N S 164 LEU C C N N 165 LEU O O N N 166 LEU CB C N N 167 LEU CG C N N 168 LEU CD1 C N N 169 LEU CD2 C N N 170 LEU OXT O N N 171 LEU H H N N 172 LEU H2 H N N 173 LEU HA H N N 174 LEU HB2 H N N 175 LEU HB3 H N N 176 LEU HG H N N 177 LEU HD11 H N N 178 LEU HD12 H N N 179 LEU HD13 H N N 180 LEU HD21 H N N 181 LEU HD22 H N N 182 LEU HD23 H N N 183 LEU HXT H N N 184 LYS N N N N 185 LYS CA C N S 186 LYS C C N N 187 LYS O O N N 188 LYS CB C N N 189 LYS CG C N N 190 LYS CD C N N 191 LYS CE C N N 192 LYS NZ N N N 193 LYS OXT O N N 194 LYS H H N N 195 LYS H2 H N N 196 LYS HA H N N 197 LYS HB2 H N N 198 LYS HB3 H N N 199 LYS HG2 H N N 200 LYS HG3 H N N 201 LYS HD2 H N N 202 LYS HD3 H N N 203 LYS HE2 H N N 204 LYS HE3 H N N 205 LYS HZ1 H N N 206 LYS HZ2 H N N 207 LYS HZ3 H N N 208 LYS HXT H N N 209 MLY N N N N 210 MLY CA C N S 211 MLY CB C N N 212 MLY CG C N N 213 MLY CD C N N 214 MLY CE C N N 215 MLY NZ N N N 216 MLY CH1 C N N 217 MLY CH2 C N N 218 MLY C C N N 219 MLY O O N N 220 MLY OXT O N N 221 MLY H H N N 222 MLY H2 H N N 223 MLY HA H N N 224 MLY HB2 H N N 225 MLY HB3 H N N 226 MLY HG2 H N N 227 MLY HG3 H N N 228 MLY HD2 H N N 229 MLY HD3 H N N 230 MLY HE2 H N N 231 MLY HE3 H N N 232 MLY HH11 H N N 233 MLY HH12 H N N 234 MLY HH13 H N N 235 MLY HH21 H N N 236 MLY HH22 H N N 237 MLY HH23 H N N 238 MLY HXT H N N 239 MSE N N N N 240 MSE CA C N S 241 MSE C C N N 242 MSE O O N N 243 MSE OXT O N N 244 MSE CB C N N 245 MSE CG C N N 246 MSE SE SE N N 247 MSE CE C N N 248 MSE H H N N 249 MSE H2 H N N 250 MSE HA H N N 251 MSE HXT H N N 252 MSE HB2 H N N 253 MSE HB3 H N N 254 MSE HG2 H N N 255 MSE HG3 H N N 256 MSE HE1 H N N 257 MSE HE2 H N N 258 MSE HE3 H N N 259 PEG C1 C N N 260 PEG O1 O N N 261 PEG C2 C N N 262 PEG O2 O N N 263 PEG C3 C N N 264 PEG C4 C N N 265 PEG O4 O N N 266 PEG H11 H N N 267 PEG H12 H N N 268 PEG HO1 H N N 269 PEG H21 H N N 270 PEG H22 H N N 271 PEG H31 H N N 272 PEG H32 H N N 273 PEG H41 H N N 274 PEG H42 H N N 275 PEG HO4 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 SO4 S S N N 331 SO4 O1 O N N 332 SO4 O2 O N N 333 SO4 O3 O N N 334 SO4 O4 O N N 335 THR N N N N 336 THR CA C N S 337 THR C C N N 338 THR O O N N 339 THR CB C N R 340 THR OG1 O N N 341 THR CG2 C N N 342 THR OXT O N N 343 THR H H N N 344 THR H2 H N N 345 THR HA H N N 346 THR HB H N N 347 THR HG1 H N N 348 THR HG21 H N N 349 THR HG22 H N N 350 THR HG23 H N N 351 THR HXT H N N 352 TRP N N N N 353 TRP CA C N S 354 TRP C C N N 355 TRP O O N N 356 TRP CB C N N 357 TRP CG C Y N 358 TRP CD1 C Y N 359 TRP CD2 C Y N 360 TRP NE1 N Y N 361 TRP CE2 C Y N 362 TRP CE3 C Y N 363 TRP CZ2 C Y N 364 TRP CZ3 C Y N 365 TRP CH2 C Y N 366 TRP OXT O N N 367 TRP H H N N 368 TRP H2 H N N 369 TRP HA H N N 370 TRP HB2 H N N 371 TRP HB3 H N N 372 TRP HD1 H N N 373 TRP HE1 H N N 374 TRP HE3 H N N 375 TRP HZ2 H N N 376 TRP HZ3 H N N 377 TRP HH2 H N N 378 TRP HXT H N N 379 TYR N N N N 380 TYR CA C N S 381 TYR C C N N 382 TYR O O N N 383 TYR CB C N N 384 TYR CG C Y N 385 TYR CD1 C Y N 386 TYR CD2 C Y N 387 TYR CE1 C Y N 388 TYR CE2 C Y N 389 TYR CZ C Y N 390 TYR OH O N N 391 TYR OXT O N N 392 TYR H H N N 393 TYR H2 H N N 394 TYR HA H N N 395 TYR HB2 H N N 396 TYR HB3 H N N 397 TYR HD1 H N N 398 TYR HD2 H N N 399 TYR HE1 H N N 400 TYR HE2 H N N 401 TYR HH H N N 402 TYR HXT H N N 403 VAL N N N N 404 VAL CA C N S 405 VAL C C N N 406 VAL O O N N 407 VAL CB C N N 408 VAL CG1 C N N 409 VAL CG2 C N N 410 VAL OXT O N N 411 VAL H H N N 412 VAL H2 H N N 413 VAL HA H N N 414 VAL HB H N N 415 VAL HG11 H N N 416 VAL HG12 H N N 417 VAL HG13 H N N 418 VAL HG21 H N N 419 VAL HG22 H N N 420 VAL HG23 H N N 421 VAL HXT H N N 422 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACT C O doub N N 1 ACT C OXT sing N N 2 ACT C CH3 sing N N 3 ACT CH3 H1 sing N N 4 ACT CH3 H2 sing N N 5 ACT CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ASN N CA sing N N 19 ASN N H sing N N 20 ASN N H2 sing N N 21 ASN CA C sing N N 22 ASN CA CB sing N N 23 ASN CA HA sing N N 24 ASN C O doub N N 25 ASN C OXT sing N N 26 ASN CB CG sing N N 27 ASN CB HB2 sing N N 28 ASN CB HB3 sing N N 29 ASN CG OD1 doub N N 30 ASN CG ND2 sing N N 31 ASN ND2 HD21 sing N N 32 ASN ND2 HD22 sing N N 33 ASN OXT HXT sing N N 34 ASP N CA sing N N 35 ASP N H sing N N 36 ASP N H2 sing N N 37 ASP CA C sing N N 38 ASP CA CB sing N N 39 ASP CA HA sing N N 40 ASP C O doub N N 41 ASP C OXT sing N N 42 ASP CB CG sing N N 43 ASP CB HB2 sing N N 44 ASP CB HB3 sing N N 45 ASP CG OD1 doub N N 46 ASP CG OD2 sing N N 47 ASP OD2 HD2 sing N N 48 ASP OXT HXT sing N N 49 CYS N CA sing N N 50 CYS N H sing N N 51 CYS N H2 sing N N 52 CYS CA C sing N N 53 CYS CA CB sing N N 54 CYS CA HA sing N N 55 CYS C O doub N N 56 CYS C OXT sing N N 57 CYS CB SG sing N N 58 CYS CB HB2 sing N N 59 CYS CB HB3 sing N N 60 CYS SG HG sing N N 61 CYS OXT HXT sing N N 62 GLN N CA sing N N 63 GLN N H sing N N 64 GLN N H2 sing N N 65 GLN CA C sing N N 66 GLN CA CB sing N N 67 GLN CA HA sing N N 68 GLN C O doub N N 69 GLN C OXT sing N N 70 GLN CB CG sing N N 71 GLN CB HB2 sing N N 72 GLN CB HB3 sing N N 73 GLN CG CD sing N N 74 GLN CG HG2 sing N N 75 GLN CG HG3 sing N N 76 GLN CD OE1 doub N N 77 GLN CD NE2 sing N N 78 GLN NE2 HE21 sing N N 79 GLN NE2 HE22 sing N N 80 GLN OXT HXT sing N N 81 GLU N CA sing N N 82 GLU N H sing N N 83 GLU N H2 sing N N 84 GLU CA C sing N N 85 GLU CA CB sing N N 86 GLU CA HA sing N N 87 GLU C O doub N N 88 GLU C OXT sing N N 89 GLU CB CG sing N N 90 GLU CB HB2 sing N N 91 GLU CB HB3 sing N N 92 GLU CG CD sing N N 93 GLU CG HG2 sing N N 94 GLU CG HG3 sing N N 95 GLU CD OE1 doub N N 96 GLU CD OE2 sing N N 97 GLU OE2 HE2 sing N N 98 GLU OXT HXT sing N N 99 GLY N CA sing N N 100 GLY N H sing N N 101 GLY N H2 sing N N 102 GLY CA C sing N N 103 GLY CA HA2 sing N N 104 GLY CA HA3 sing N N 105 GLY C O doub N N 106 GLY C OXT sing N N 107 GLY OXT HXT sing N N 108 HIS N CA sing N N 109 HIS N H sing N N 110 HIS N H2 sing N N 111 HIS CA C sing N N 112 HIS CA CB sing N N 113 HIS CA HA sing N N 114 HIS C O doub N N 115 HIS C OXT sing N N 116 HIS CB CG sing N N 117 HIS CB HB2 sing N N 118 HIS CB HB3 sing N N 119 HIS CG ND1 sing Y N 120 HIS CG CD2 doub Y N 121 HIS ND1 CE1 doub Y N 122 HIS ND1 HD1 sing N N 123 HIS CD2 NE2 sing Y N 124 HIS CD2 HD2 sing N N 125 HIS CE1 NE2 sing Y N 126 HIS CE1 HE1 sing N N 127 HIS NE2 HE2 sing N N 128 HIS OXT HXT sing N N 129 HOH O H1 sing N N 130 HOH O H2 sing N N 131 ILE N CA sing N N 132 ILE N H sing N N 133 ILE N H2 sing N N 134 ILE CA C sing N N 135 ILE CA CB sing N N 136 ILE CA HA sing N N 137 ILE C O doub N N 138 ILE C OXT sing N N 139 ILE CB CG1 sing N N 140 ILE CB CG2 sing N N 141 ILE CB HB sing N N 142 ILE CG1 CD1 sing N N 143 ILE CG1 HG12 sing N N 144 ILE CG1 HG13 sing N N 145 ILE CG2 HG21 sing N N 146 ILE CG2 HG22 sing N N 147 ILE CG2 HG23 sing N N 148 ILE CD1 HD11 sing N N 149 ILE CD1 HD12 sing N N 150 ILE CD1 HD13 sing N N 151 ILE OXT HXT sing N N 152 LEU N CA sing N N 153 LEU N H sing N N 154 LEU N H2 sing N N 155 LEU CA C sing N N 156 LEU CA CB sing N N 157 LEU CA HA sing N N 158 LEU C O doub N N 159 LEU C OXT sing N N 160 LEU CB CG sing N N 161 LEU CB HB2 sing N N 162 LEU CB HB3 sing N N 163 LEU CG CD1 sing N N 164 LEU CG CD2 sing N N 165 LEU CG HG sing N N 166 LEU CD1 HD11 sing N N 167 LEU CD1 HD12 sing N N 168 LEU CD1 HD13 sing N N 169 LEU CD2 HD21 sing N N 170 LEU CD2 HD22 sing N N 171 LEU CD2 HD23 sing N N 172 LEU OXT HXT sing N N 173 LYS N CA sing N N 174 LYS N H sing N N 175 LYS N H2 sing N N 176 LYS CA C sing N N 177 LYS CA CB sing N N 178 LYS CA HA sing N N 179 LYS C O doub N N 180 LYS C OXT sing N N 181 LYS CB CG sing N N 182 LYS CB HB2 sing N N 183 LYS CB HB3 sing N N 184 LYS CG CD sing N N 185 LYS CG HG2 sing N N 186 LYS CG HG3 sing N N 187 LYS CD CE sing N N 188 LYS CD HD2 sing N N 189 LYS CD HD3 sing N N 190 LYS CE NZ sing N N 191 LYS CE HE2 sing N N 192 LYS CE HE3 sing N N 193 LYS NZ HZ1 sing N N 194 LYS NZ HZ2 sing N N 195 LYS NZ HZ3 sing N N 196 LYS OXT HXT sing N N 197 MLY N CA sing N N 198 MLY N H sing N N 199 MLY N H2 sing N N 200 MLY CA CB sing N N 201 MLY CA C sing N N 202 MLY CA HA sing N N 203 MLY CB CG sing N N 204 MLY CB HB2 sing N N 205 MLY CB HB3 sing N N 206 MLY CG CD sing N N 207 MLY CG HG2 sing N N 208 MLY CG HG3 sing N N 209 MLY CD CE sing N N 210 MLY CD HD2 sing N N 211 MLY CD HD3 sing N N 212 MLY CE NZ sing N N 213 MLY CE HE2 sing N N 214 MLY CE HE3 sing N N 215 MLY NZ CH1 sing N N 216 MLY NZ CH2 sing N N 217 MLY CH1 HH11 sing N N 218 MLY CH1 HH12 sing N N 219 MLY CH1 HH13 sing N N 220 MLY CH2 HH21 sing N N 221 MLY CH2 HH22 sing N N 222 MLY CH2 HH23 sing N N 223 MLY C O doub N N 224 MLY C OXT sing N N 225 MLY OXT HXT sing N N 226 MSE N CA sing N N 227 MSE N H sing N N 228 MSE N H2 sing N N 229 MSE CA C sing N N 230 MSE CA CB sing N N 231 MSE CA HA sing N N 232 MSE C O doub N N 233 MSE C OXT sing N N 234 MSE OXT HXT sing N N 235 MSE CB CG sing N N 236 MSE CB HB2 sing N N 237 MSE CB HB3 sing N N 238 MSE CG SE sing N N 239 MSE CG HG2 sing N N 240 MSE CG HG3 sing N N 241 MSE SE CE sing N N 242 MSE CE HE1 sing N N 243 MSE CE HE2 sing N N 244 MSE CE HE3 sing N N 245 PEG C1 O1 sing N N 246 PEG C1 C2 sing N N 247 PEG C1 H11 sing N N 248 PEG C1 H12 sing N N 249 PEG O1 HO1 sing N N 250 PEG C2 O2 sing N N 251 PEG C2 H21 sing N N 252 PEG C2 H22 sing N N 253 PEG O2 C3 sing N N 254 PEG C3 C4 sing N N 255 PEG C3 H31 sing N N 256 PEG C3 H32 sing N N 257 PEG C4 O4 sing N N 258 PEG C4 H41 sing N N 259 PEG C4 H42 sing N N 260 PEG O4 HO4 sing N N 261 PHE N CA sing N N 262 PHE N H sing N N 263 PHE N H2 sing N N 264 PHE CA C sing N N 265 PHE CA CB sing N N 266 PHE CA HA sing N N 267 PHE C O doub N N 268 PHE C OXT sing N N 269 PHE CB CG sing N N 270 PHE CB HB2 sing N N 271 PHE CB HB3 sing N N 272 PHE CG CD1 doub Y N 273 PHE CG CD2 sing Y N 274 PHE CD1 CE1 sing Y N 275 PHE CD1 HD1 sing N N 276 PHE CD2 CE2 doub Y N 277 PHE CD2 HD2 sing N N 278 PHE CE1 CZ doub Y N 279 PHE CE1 HE1 sing N N 280 PHE CE2 CZ sing Y N 281 PHE CE2 HE2 sing N N 282 PHE CZ HZ sing N N 283 PHE OXT HXT sing N N 284 PRO N CA sing N N 285 PRO N CD sing N N 286 PRO N H sing N N 287 PRO CA C sing N N 288 PRO CA CB sing N N 289 PRO CA HA sing N N 290 PRO C O doub N N 291 PRO C OXT sing N N 292 PRO CB CG sing N N 293 PRO CB HB2 sing N N 294 PRO CB HB3 sing N N 295 PRO CG CD sing N N 296 PRO CG HG2 sing N N 297 PRO CG HG3 sing N N 298 PRO CD HD2 sing N N 299 PRO CD HD3 sing N N 300 PRO OXT HXT sing N N 301 SER N CA sing N N 302 SER N H sing N N 303 SER N H2 sing N N 304 SER CA C sing N N 305 SER CA CB sing N N 306 SER CA HA sing N N 307 SER C O doub N N 308 SER C OXT sing N N 309 SER CB OG sing N N 310 SER CB HB2 sing N N 311 SER CB HB3 sing N N 312 SER OG HG sing N N 313 SER OXT HXT sing N N 314 SO4 S O1 doub N N 315 SO4 S O2 doub N N 316 SO4 S O3 sing N N 317 SO4 S O4 sing N N 318 THR N CA sing N N 319 THR N H sing N N 320 THR N H2 sing N N 321 THR CA C sing N N 322 THR CA CB sing N N 323 THR CA HA sing N N 324 THR C O doub N N 325 THR C OXT sing N N 326 THR CB OG1 sing N N 327 THR CB CG2 sing N N 328 THR CB HB sing N N 329 THR OG1 HG1 sing N N 330 THR CG2 HG21 sing N N 331 THR CG2 HG22 sing N N 332 THR CG2 HG23 sing N N 333 THR OXT HXT sing N N 334 TRP N CA sing N N 335 TRP N H sing N N 336 TRP N H2 sing N N 337 TRP CA C sing N N 338 TRP CA CB sing N N 339 TRP CA HA sing N N 340 TRP C O doub N N 341 TRP C OXT sing N N 342 TRP CB CG sing N N 343 TRP CB HB2 sing N N 344 TRP CB HB3 sing N N 345 TRP CG CD1 doub Y N 346 TRP CG CD2 sing Y N 347 TRP CD1 NE1 sing Y N 348 TRP CD1 HD1 sing N N 349 TRP CD2 CE2 doub Y N 350 TRP CD2 CE3 sing Y N 351 TRP NE1 CE2 sing Y N 352 TRP NE1 HE1 sing N N 353 TRP CE2 CZ2 sing Y N 354 TRP CE3 CZ3 doub Y N 355 TRP CE3 HE3 sing N N 356 TRP CZ2 CH2 doub Y N 357 TRP CZ2 HZ2 sing N N 358 TRP CZ3 CH2 sing Y N 359 TRP CZ3 HZ3 sing N N 360 TRP CH2 HH2 sing N N 361 TRP OXT HXT sing N N 362 TYR N CA sing N N 363 TYR N H sing N N 364 TYR N H2 sing N N 365 TYR CA C sing N N 366 TYR CA CB sing N N 367 TYR CA HA sing N N 368 TYR C O doub N N 369 TYR C OXT sing N N 370 TYR CB CG sing N N 371 TYR CB HB2 sing N N 372 TYR CB HB3 sing N N 373 TYR CG CD1 doub Y N 374 TYR CG CD2 sing Y N 375 TYR CD1 CE1 sing Y N 376 TYR CD1 HD1 sing N N 377 TYR CD2 CE2 doub Y N 378 TYR CD2 HD2 sing N N 379 TYR CE1 CZ doub Y N 380 TYR CE1 HE1 sing N N 381 TYR CE2 CZ sing Y N 382 TYR CE2 HE2 sing N N 383 TYR CZ OH sing N N 384 TYR OH HH sing N N 385 TYR OXT HXT sing N N 386 VAL N CA sing N N 387 VAL N H sing N N 388 VAL N H2 sing N N 389 VAL CA C sing N N 390 VAL CA CB sing N N 391 VAL CA HA sing N N 392 VAL C O doub N N 393 VAL C OXT sing N N 394 VAL CB CG1 sing N N 395 VAL CB CG2 sing N N 396 VAL CB HB sing N N 397 VAL CG1 HG11 sing N N 398 VAL CG1 HG12 sing N N 399 VAL CG1 HG13 sing N N 400 VAL CG2 HG21 sing N N 401 VAL CG2 HG22 sing N N 402 VAL CG2 HG23 sing N N 403 VAL OXT HXT sing N N 404 # _atom_sites.entry_id 3NYM _atom_sites.fract_transf_matrix[1][1] 0.022912 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002322 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027979 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009896 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ # loop_ #