data_3NYP # _entry.id 3NYP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3NYP pdb_00003nyp 10.2210/pdb3nyp/pdb NDB NA0638 ? ? RCSB RCSB060445 ? ? WWPDB D_1000060445 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1JPQ 'Same quadruplex structure in its native form (ligand-free)' unspecified PDB 1JRN 'Same quadruplex structure in its native form (ligand-free)' unspecified PDB 1L1H 'Same quadruplex structure bound to the non-flourinated form of the ligand BSU-6039' unspecified PDB 3CE5 'A bimolecular parallel-stranded human telomeric quadruplex in complex with a 3,6,9-trisubstituted acridine molecular BRACO19' unspecified PDB 3EM2 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6038' unspecified PDB 3EQW ;A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in small unit cell ; unspecified PDB 3ERU 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6045' unspecified PDB 3ES0 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6048' unspecified PDB 3ET8 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6054' unspecified PDB 3EUI ;A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6042 in large unit cell ; unspecified PDB 3EUM 'A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine BSU-6066' unspecified PDB 3NZ7 . unspecified # _pdbx_database_status.entry_id 3NYP _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-07-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Campbell, N.H.' 1 'Neidle, S.' 2 # _citation.id primary _citation.title ;Fluorine in medicinal chemistry: beta-fluorination of peripheral pyrrolidines attached to acridine ligands affects their interactions with G-quadruplex DNA. ; _citation.journal_abbrev Org.Biomol.Chem. _citation.journal_volume 9 _citation.page_first 1328 _citation.page_last 1331 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1477-0520 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21221451 _citation.pdbx_database_id_DOI 10.1039/c0ob00886a # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Campbell, N.H.' 1 ? primary 'Smith, D.L.' 2 ? primary 'Reszka, A.P.' 3 ? primary 'Neidle, S.' 4 ? primary ;O'Hagan, D. ; 5 ? # _cell.length_a 57.800 _cell.length_b 44.460 _cell.length_c 28.140 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3NYP _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.entry_id 3NYP _symmetry.Int_Tables_number 18 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3'" 3805.460 2 ? ? ? ? 2 non-polymer syn 'POTASSIUM ION' 39.098 4 ? ? ? ? 3 non-polymer syn "3,6-bis(3-(3'-(R)-fluoropyrrolindino)propionamido)acridine" 495.564 1 ? ? ? ? 4 water nat water 18.015 177 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DG)(DG)(DT)(DT)(DT)(DT)(DG)(DG)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can GGGGTTTTGGGG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DT n 1 9 DG n 1 10 DG n 1 11 DG n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This telomeric sequence occurs naturally in the organism Oxytricha nova' # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3NYP _struct_ref.pdbx_db_accession 3NYP _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GGGGTTTTGGGG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3NYP A 1 ? 12 ? 3NYP 1 ? 12 ? 1 12 2 1 3NYP B 1 ? 12 ? 3NYP 1 ? 12 ? 1 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 RNR non-polymer . "3,6-bis(3-(3'-(R)-fluoropyrrolindino)propionamido)acridine" "N,N'-acridine-3,6-diylbis{3-[(3R)-3-fluoropyrrolidin-1-yl]propanamide}" 'C27 H31 F2 N5 O2' 495.564 # _exptl.crystals_number 1 _exptl.entry_id 3NYP _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.38 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 48.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 285.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;The 5 Ul drop contained 1.2 mM quadruplex DNA, 1.2 mM ligand, 4% MPD, 4 mM potassium chloride, 4 mM magnesium chloride, 4 mM sodium chloride, 4 mM lithium sulphate, 3.2 mM spermine.4HCl and 16 mM potassium cacodylate buffer at pH 6.5. This was equilibrated against a reservoir well solution of 500 Ul of 45% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 285.15K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 105 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-08-09 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9702 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9702 _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 # _reflns.entry_id 3NYP _reflns.d_resolution_high 1.18 _reflns.d_resolution_low 21.990 _reflns.number_all 23982 _reflns.number_obs 23982 _reflns.pdbx_netI_over_sigmaI 15.500 _reflns.pdbx_Rsym_value 0.051 _reflns.pdbx_redundancy 3.600 _reflns.percent_possible_obs 97.700 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.pdbx_Rmerge_I_obs 0.051 _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.180 1.240 ? 11991 ? 0.120 5.7 0.120 ? 3.500 ? 3423 97.800 ? 1 1.240 1.320 ? 11919 ? 0.089 7.4 0.089 ? 3.600 ? 3289 98.500 ? 2 1.320 1.410 ? 11391 ? 0.074 8.8 0.074 ? 3.600 ? 3136 99.200 ? 3 1.410 1.520 ? 10680 ? 0.079 7.7 0.079 ? 3.700 ? 2914 99.300 ? 4 1.520 1.670 ? 9930 ? 0.062 9.1 0.062 ? 3.700 ? 2720 99.600 ? 5 1.670 1.860 ? 9019 ? 0.049 10.6 0.049 ? 3.700 ? 2463 99.300 ? 6 1.860 2.150 ? 7881 ? 0.047 12.2 0.047 ? 3.600 ? 2186 99.700 ? 7 2.150 2.640 ? 6114 ? 0.054 10.5 0.054 ? 3.300 ? 1842 98.300 ? 8 2.640 3.730 ? 4808 ? 0.037 15.1 0.037 ? 3.400 ? 1401 94.500 ? 9 3.730 20.748 ? 1714 ? 0.032 17.8 0.032 ? 2.800 ? 608 68.300 ? 10 # _refine.entry_id 3NYP _refine.ls_d_res_high 1.1790 _refine.ls_d_res_low 21.9900 _refine.pdbx_ls_sigma_F 0.040 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 94.5900 _refine.ls_number_reflns_obs 23275 _refine.ls_number_reflns_all 23275 _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details Random _refine.details ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1658 _refine.ls_R_factor_R_work 0.1647 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1881 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0800 _refine.ls_number_reflns_R_free 1183 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 14.8626 _refine.solvent_model_param_bsol 46.9460 _refine.solvent_model_param_ksol 0.3250 _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.5525 _refine.aniso_B[2][2] 1.2304 _refine.aniso_B[3][3] -2.7829 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.1300 _refine.overall_SU_B ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB entry 1L1H' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 56.090 _refine.B_iso_min 4.940 _refine.occupancy_max 1.000 _refine.occupancy_min 0.420 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 506 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 177 _refine_hist.number_atoms_total 723 _refine_hist.d_res_high 1.1790 _refine_hist.d_res_low 21.9900 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 609 0.024 ? ? 'X-RAY DIFFRACTION' ? f_angle_d 937 2.125 ? ? 'X-RAY DIFFRACTION' ? f_chiral_restr 94 0.141 ? ? 'X-RAY DIFFRACTION' ? f_plane_restr 27 0.022 ? ? 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 265 31.085 ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_R_work _refine_ls_shell.R_factor_R_free _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id 1.1790 1.2327 8 86.0000 2440 . 0.1983 0.2808 . 140 . 2580 2440 . 'X-RAY DIFFRACTION' 1.2327 1.2976 8 90.0000 2597 . 0.1663 0.2258 . 128 . 2725 2597 . 'X-RAY DIFFRACTION' 1.2976 1.3789 8 93.0000 2673 . 0.1539 0.1953 . 142 . 2815 2673 . 'X-RAY DIFFRACTION' 1.3789 1.4854 8 95.0000 2743 . 0.1602 0.2113 . 161 . 2904 2743 . 'X-RAY DIFFRACTION' 1.4854 1.6348 8 97.0000 2811 . 0.1574 0.1780 . 151 . 2962 2811 . 'X-RAY DIFFRACTION' 1.6348 1.8713 8 98.0000 2870 . 0.1329 0.1667 . 149 . 3019 2870 . 'X-RAY DIFFRACTION' 1.8713 2.3572 8 99.0000 2905 . 0.1513 0.1717 . 161 . 3066 2905 . 'X-RAY DIFFRACTION' 2.3572 21.9934 8 98.0000 3053 . 0.1731 0.1716 . 151 . 3204 3053 . 'X-RAY DIFFRACTION' # _struct.entry_id 3NYP _struct.title ;A bimolecular anti-parallel-stranded Oxytricha nova telomeric quadruplex in complex with a 3,6-disubstituted acridine ligand containing bis-3-fluoropyrrolidine end side chains ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3NYP _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'QUADRUPLEX, OXTYRICHA NOVA, BSU-6039, BSU6039, ANTI-PARALLEL, BIMOLECULAR, MACROMOLECULE, DNA, G-QUADRUPLEX, TELOMERE, ACRIDINE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 C K . K ? ? A DG 1 A K 14 1_555 ? ? ? ? ? ? ? 2.930 ? ? metalc2 metalc ? ? A DG 1 O6 ? ? ? 1_555 G K . K ? ? A DG 1 B K 13 1_555 ? ? ? ? ? ? ? 3.223 ? ? metalc3 metalc ? ? A DG 2 O6 ? ? ? 1_555 C K . K ? ? A DG 2 A K 14 1_555 ? ? ? ? ? ? ? 3.076 ? ? metalc4 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? A DG 2 A K 15 1_555 ? ? ? ? ? ? ? 3.003 ? ? metalc5 metalc ? ? A DG 3 O6 ? ? ? 1_555 D K . K ? ? A DG 3 A K 15 1_555 ? ? ? ? ? ? ? 3.026 ? ? metalc6 metalc ? ? A DG 3 O6 ? ? ? 1_555 E K . K ? ? A DG 3 A K 16 1_555 ? ? ? ? ? ? ? 3.212 ? ? metalc7 metalc ? ? A DG 4 O6 ? ? ? 1_555 E K . K ? ? A DG 4 A K 16 1_555 ? ? ? ? ? ? ? 2.926 ? ? metalc8 metalc ? ? A DG 9 O6 ? ? ? 1_555 E K . K ? ? A DG 9 A K 16 1_555 ? ? ? ? ? ? ? 2.901 ? ? metalc9 metalc ? ? A DG 10 O6 ? ? ? 1_555 D K . K ? ? A DG 10 A K 15 1_555 ? ? ? ? ? ? ? 2.990 ? ? metalc10 metalc ? ? A DG 10 O6 ? ? ? 1_555 E K . K ? ? A DG 10 A K 16 1_555 ? ? ? ? ? ? ? 3.249 ? ? metalc11 metalc ? ? A DG 11 O6 ? ? ? 1_555 C K . K ? ? A DG 11 A K 14 1_555 ? ? ? ? ? ? ? 2.983 ? ? metalc12 metalc ? ? A DG 11 O6 ? ? ? 1_555 D K . K ? ? A DG 11 A K 15 1_555 ? ? ? ? ? ? ? 3.118 ? ? metalc13 metalc ? ? A DG 12 O6 ? ? ? 1_555 C K . K ? ? A DG 12 A K 14 1_555 ? ? ? ? ? ? ? 3.017 ? ? metalc14 metalc ? ? A DG 12 O6 ? ? ? 1_555 G K . K ? ? A DG 12 B K 13 1_555 ? ? ? ? ? ? ? 3.022 ? ? metalc15 metalc ? ? C K . K ? ? ? 1_555 B DG 3 O6 ? ? A K 14 B DG 3 1_555 ? ? ? ? ? ? ? 3.039 ? ? metalc16 metalc ? ? C K . K ? ? ? 1_555 B DG 4 O6 ? ? A K 14 B DG 4 1_555 ? ? ? ? ? ? ? 3.071 ? ? metalc17 metalc ? ? C K . K ? ? ? 1_555 B DG 9 O6 ? ? A K 14 B DG 9 1_555 ? ? ? ? ? ? ? 3.081 ? ? metalc18 metalc ? ? C K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 14 B DG 10 1_555 ? ? ? ? ? ? ? 3.061 ? ? metalc19 metalc ? ? D K . K ? ? ? 1_555 B DG 2 O6 ? ? A K 15 B DG 2 1_555 ? ? ? ? ? ? ? 2.925 ? ? metalc20 metalc ? ? D K . K ? ? ? 1_555 B DG 3 O6 ? ? A K 15 B DG 3 1_555 ? ? ? ? ? ? ? 3.017 ? ? metalc21 metalc ? ? D K . K ? ? ? 1_555 B DG 10 O6 ? ? A K 15 B DG 10 1_555 ? ? ? ? ? ? ? 3.115 ? ? metalc22 metalc ? ? D K . K ? ? ? 1_555 B DG 11 O6 ? ? A K 15 B DG 11 1_555 ? ? ? ? ? ? ? 2.996 ? ? metalc23 metalc ? ? E K . K ? ? ? 1_555 B DG 1 O6 ? ? A K 16 B DG 1 1_555 ? ? ? ? ? ? ? 2.927 ? ? metalc24 metalc ? ? E K . K ? ? ? 1_555 B DG 2 O6 ? ? A K 16 B DG 2 1_555 ? ? ? ? ? ? ? 3.104 ? ? metalc25 metalc ? ? E K . K ? ? ? 1_555 B DG 11 O6 ? ? A K 16 B DG 11 1_555 ? ? ? ? ? ? ? 3.218 ? ? metalc26 metalc ? ? E K . K ? ? ? 1_555 B DG 12 O6 ? ? A K 16 B DG 12 1_555 ? ? ? ? ? ? ? 2.893 ? ? metalc27 metalc ? ? B DG 4 O6 ? ? ? 1_555 G K . K ? ? B DG 4 B K 13 1_555 ? ? ? ? ? ? ? 3.129 ? ? metalc28 metalc ? ? B DT 5 O2 ? ? ? 1_555 G K . K ? ? B DT 5 B K 13 1_555 ? ? ? ? ? ? ? 3.005 ? ? metalc29 metalc ? ? B DT 7 O2 ? ? ? 1_555 G K . K ? ? B DT 7 B K 13 1_555 ? ? ? ? ? ? ? 2.822 ? ? metalc30 metalc ? ? B DG 9 O6 ? ? ? 1_555 G K . K ? ? B DG 9 B K 13 1_555 ? ? ? ? ? ? ? 3.136 ? ? metalc31 metalc ? ? G K . K ? ? ? 1_555 I HOH . O ? ? B K 13 B HOH 14 1_555 ? ? ? ? ? ? ? 2.907 ? ? metalc32 metalc ? ? G K . K ? ? ? 1_555 I HOH . O ? ? B K 13 B HOH 24 1_555 ? ? ? ? ? ? ? 3.167 ? ? hydrog1 hydrog ? ? A DG 1 N7 ? ? ? 1_555 B DG 4 N2 ? ? A DG 1 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DG 4 N1 ? ? A DG 1 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DG 9 O6 ? ? A DG 1 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DG 9 N7 ? ? A DG 1 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 2 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 2 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 10 N2 ? ? A DG 2 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 10 N1 ? ? A DG 2 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 2 N2 ? ? A DG 3 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 2 N1 ? ? A DG 3 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DG 11 O6 ? ? A DG 3 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DG 11 N7 ? ? A DG 3 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DG 1 O6 ? ? A DG 4 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DG 1 N7 ? ? A DG 4 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 12 N2 ? ? A DG 4 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 12 N1 ? ? A DG 4 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 9 N7 ? ? ? 1_555 B DG 1 N2 ? ? A DG 9 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DG 1 N1 ? ? A DG 9 B DG 1 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 12 O6 ? ? A DG 9 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 12 N7 ? ? A DG 9 B DG 12 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DG 2 O6 ? ? A DG 10 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DG 2 N7 ? ? A DG 10 B DG 2 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 10 N7 ? ? ? 1_555 B DG 11 N2 ? ? A DG 10 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DG 11 N1 ? ? A DG 10 B DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 11 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 11 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 11 B DG 3 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DG 10 O6 ? ? A DG 11 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DG 10 N7 ? ? A DG 11 B DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 12 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 12 B DG 4 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 12 N7 ? ? ? 1_555 B DG 9 N2 ? ? A DG 12 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DG 9 N1 ? ? A DG 12 B DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DT 5 O2 ? ? ? 1_555 B DT 7 N3 ? ? B DT 5 B DT 7 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A K 14 ? 10 'BINDING SITE FOR RESIDUE K A 14' AC2 Software A K 15 ? 10 'BINDING SITE FOR RESIDUE K A 15' AC3 Software A K 16 ? 9 'BINDING SITE FOR RESIDUE K A 16' AC4 Software A RNR 17 ? 8 'BINDING SITE FOR RESIDUE RNR A 17' AC5 Software B K 13 ? 8 'BINDING SITE FOR RESIDUE K B 13' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DG A 1 ? DG A 1 . ? 1_555 ? 2 AC1 10 DG A 2 ? DG A 2 . ? 1_555 ? 3 AC1 10 DG A 11 ? DG A 11 . ? 1_555 ? 4 AC1 10 DG A 12 ? DG A 12 . ? 1_555 ? 5 AC1 10 K D . ? K A 15 . ? 1_555 ? 6 AC1 10 DG B 3 ? DG B 3 . ? 1_555 ? 7 AC1 10 DG B 4 ? DG B 4 . ? 1_555 ? 8 AC1 10 DG B 9 ? DG B 9 . ? 1_555 ? 9 AC1 10 DG B 10 ? DG B 10 . ? 1_555 ? 10 AC1 10 K G . ? K B 13 . ? 1_555 ? 11 AC2 10 DG A 2 ? DG A 2 . ? 1_555 ? 12 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 13 AC2 10 DG A 10 ? DG A 10 . ? 1_555 ? 14 AC2 10 DG A 11 ? DG A 11 . ? 1_555 ? 15 AC2 10 K C . ? K A 14 . ? 1_555 ? 16 AC2 10 K E . ? K A 16 . ? 1_555 ? 17 AC2 10 DG B 2 ? DG B 2 . ? 1_555 ? 18 AC2 10 DG B 3 ? DG B 3 . ? 1_555 ? 19 AC2 10 DG B 10 ? DG B 10 . ? 1_555 ? 20 AC2 10 DG B 11 ? DG B 11 . ? 1_555 ? 21 AC3 9 DG A 3 ? DG A 3 . ? 1_555 ? 22 AC3 9 DG A 4 ? DG A 4 . ? 1_555 ? 23 AC3 9 DG A 9 ? DG A 9 . ? 1_555 ? 24 AC3 9 DG A 10 ? DG A 10 . ? 1_555 ? 25 AC3 9 K D . ? K A 15 . ? 1_555 ? 26 AC3 9 DG B 1 ? DG B 1 . ? 1_555 ? 27 AC3 9 DG B 2 ? DG B 2 . ? 1_555 ? 28 AC3 9 DG B 11 ? DG B 11 . ? 1_555 ? 29 AC3 9 DG B 12 ? DG B 12 . ? 1_555 ? 30 AC4 8 DT A 6 ? DT A 6 . ? 1_555 ? 31 AC4 8 DT A 7 ? DT A 7 . ? 1_555 ? 32 AC4 8 DG A 9 ? DG A 9 . ? 1_555 ? 33 AC4 8 DG B 1 ? DG B 1 . ? 1_555 ? 34 AC4 8 DT B 8 ? DT B 8 . ? 3_556 ? 35 AC4 8 DG B 9 ? DG B 9 . ? 3_556 ? 36 AC4 8 DG B 12 ? DG B 12 . ? 1_555 ? 37 AC4 8 HOH I . ? HOH B 26 . ? 3_556 ? 38 AC5 8 DG A 1 ? DG A 1 . ? 1_555 ? 39 AC5 8 DG A 12 ? DG A 12 . ? 1_555 ? 40 AC5 8 K C . ? K A 14 . ? 1_555 ? 41 AC5 8 DG B 4 ? DG B 4 . ? 1_555 ? 42 AC5 8 DT B 5 ? DT B 5 . ? 1_555 ? 43 AC5 8 DT B 7 ? DT B 7 . ? 1_555 ? 44 AC5 8 DG B 9 ? DG B 9 . ? 1_555 ? 45 AC5 8 HOH I . ? HOH B 14 . ? 1_555 ? # _atom_sites.entry_id 3NYP _atom_sites.fract_transf_matrix[1][1] 0.017301 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035537 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C F K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DG 11 11 11 DG G A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DG 1 1 1 DG G B . n B 1 2 DG 2 2 2 DG G B . n B 1 3 DG 3 3 3 DG G B . n B 1 4 DG 4 4 4 DG G B . n B 1 5 DT 5 5 5 DT T B . n B 1 6 DT 6 6 6 DT T B . n B 1 7 DT 7 7 7 DT T B . n B 1 8 DT 8 8 8 DT T B . n B 1 9 DG 9 9 9 DG G B . n B 1 10 DG 10 10 10 DG G B . n B 1 11 DG 11 11 11 DG G B . n B 1 12 DG 12 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K 1 14 14 K K A . D 2 K 1 15 15 K K A . E 2 K 1 16 16 K K A . F 3 RNR 1 17 17 RNR RNR A . G 2 K 1 13 13 K K B . H 4 HOH 1 13 2 HOH HOH A . H 4 HOH 2 18 18 HOH HOH A . H 4 HOH 3 19 19 HOH HOH A . H 4 HOH 4 20 20 HOH HOH A . H 4 HOH 5 22 14 HOH HOH A . H 4 HOH 6 23 15 HOH HOH A . H 4 HOH 7 24 24 HOH HOH A . H 4 HOH 8 26 26 HOH HOH A . H 4 HOH 9 29 29 HOH HOH A . H 4 HOH 10 30 30 HOH HOH A . H 4 HOH 11 32 32 HOH HOH A . H 4 HOH 12 36 36 HOH HOH A . H 4 HOH 13 37 37 HOH HOH A . H 4 HOH 14 38 38 HOH HOH A . H 4 HOH 15 40 40 HOH HOH A . H 4 HOH 16 41 41 HOH HOH A . H 4 HOH 17 42 42 HOH HOH A . H 4 HOH 18 47 47 HOH HOH A . H 4 HOH 19 48 48 HOH HOH A . H 4 HOH 20 50 50 HOH HOH A . H 4 HOH 21 51 51 HOH HOH A . H 4 HOH 22 52 52 HOH HOH A . H 4 HOH 23 54 54 HOH HOH A . H 4 HOH 24 55 55 HOH HOH A . H 4 HOH 25 56 56 HOH HOH A . H 4 HOH 26 57 57 HOH HOH A . H 4 HOH 27 62 62 HOH HOH A . H 4 HOH 28 63 63 HOH HOH A . H 4 HOH 29 64 64 HOH HOH A . H 4 HOH 30 66 66 HOH HOH A . H 4 HOH 31 68 68 HOH HOH A . H 4 HOH 32 70 70 HOH HOH A . H 4 HOH 33 72 72 HOH HOH A . H 4 HOH 34 73 73 HOH HOH A . H 4 HOH 35 75 75 HOH HOH A . H 4 HOH 36 79 79 HOH HOH A . H 4 HOH 37 80 80 HOH HOH A . H 4 HOH 38 81 81 HOH HOH A . H 4 HOH 39 82 82 HOH HOH A . H 4 HOH 40 84 84 HOH HOH A . H 4 HOH 41 85 85 HOH HOH A . H 4 HOH 42 86 86 HOH HOH A . H 4 HOH 43 89 89 HOH HOH A . H 4 HOH 44 91 91 HOH HOH A . H 4 HOH 45 92 92 HOH HOH A . H 4 HOH 46 93 93 HOH HOH A . H 4 HOH 47 94 94 HOH HOH A . H 4 HOH 48 95 95 HOH HOH A . H 4 HOH 49 97 97 HOH HOH A . H 4 HOH 50 100 100 HOH HOH A . H 4 HOH 51 102 102 HOH HOH A . H 4 HOH 52 103 103 HOH HOH A . H 4 HOH 53 105 105 HOH HOH A . H 4 HOH 54 108 108 HOH HOH A . H 4 HOH 55 110 110 HOH HOH A . H 4 HOH 56 113 113 HOH HOH A . H 4 HOH 57 114 114 HOH HOH A . H 4 HOH 58 115 115 HOH HOH A . H 4 HOH 59 117 117 HOH HOH A . H 4 HOH 60 119 119 HOH HOH A . H 4 HOH 61 121 121 HOH HOH A . H 4 HOH 62 122 122 HOH HOH A . H 4 HOH 63 123 123 HOH HOH A . H 4 HOH 64 125 125 HOH HOH A . H 4 HOH 65 127 127 HOH HOH A . H 4 HOH 66 128 128 HOH HOH A . H 4 HOH 67 131 131 HOH HOH A . H 4 HOH 68 138 138 HOH HOH A . H 4 HOH 69 139 139 HOH HOH A . H 4 HOH 70 140 140 HOH HOH A . H 4 HOH 71 142 142 HOH HOH A . H 4 HOH 72 144 144 HOH HOH A . H 4 HOH 73 146 146 HOH HOH A . H 4 HOH 74 147 147 HOH HOH A . H 4 HOH 75 148 148 HOH HOH A . H 4 HOH 76 151 151 HOH HOH A . H 4 HOH 77 156 156 HOH HOH A . H 4 HOH 78 157 157 HOH HOH A . H 4 HOH 79 158 158 HOH HOH A . H 4 HOH 80 162 162 HOH HOH A . H 4 HOH 81 166 166 HOH HOH A . H 4 HOH 82 167 167 HOH HOH A . H 4 HOH 83 168 168 HOH HOH A . H 4 HOH 84 170 170 HOH HOH A . H 4 HOH 85 171 171 HOH HOH A . H 4 HOH 86 173 173 HOH HOH A . I 4 HOH 1 14 1 HOH HOH B . I 4 HOH 2 15 3 HOH HOH B . I 4 HOH 3 16 16 HOH HOH B . I 4 HOH 4 17 17 HOH HOH B . I 4 HOH 5 18 4 HOH HOH B . I 4 HOH 6 19 5 HOH HOH B . I 4 HOH 7 20 6 HOH HOH B . I 4 HOH 8 21 9 HOH HOH B . I 4 HOH 9 22 22 HOH HOH B . I 4 HOH 10 23 23 HOH HOH B . I 4 HOH 11 24 7 HOH HOH B . I 4 HOH 12 25 25 HOH HOH B . I 4 HOH 13 26 8 HOH HOH B . I 4 HOH 14 27 27 HOH HOH B . I 4 HOH 15 28 28 HOH HOH B . I 4 HOH 16 29 10 HOH HOH B . I 4 HOH 17 30 11 HOH HOH B . I 4 HOH 18 31 31 HOH HOH B . I 4 HOH 19 32 12 HOH HOH B . I 4 HOH 20 33 33 HOH HOH B . I 4 HOH 21 34 34 HOH HOH B . I 4 HOH 22 35 35 HOH HOH B . I 4 HOH 23 36 13 HOH HOH B . I 4 HOH 24 37 21 HOH HOH B . I 4 HOH 25 39 39 HOH HOH B . I 4 HOH 26 43 43 HOH HOH B . I 4 HOH 27 44 44 HOH HOH B . I 4 HOH 28 45 45 HOH HOH B . I 4 HOH 29 46 46 HOH HOH B . I 4 HOH 30 49 49 HOH HOH B . I 4 HOH 31 53 53 HOH HOH B . I 4 HOH 32 58 58 HOH HOH B . I 4 HOH 33 59 59 HOH HOH B . I 4 HOH 34 60 60 HOH HOH B . I 4 HOH 35 61 61 HOH HOH B . I 4 HOH 36 65 65 HOH HOH B . I 4 HOH 37 67 67 HOH HOH B . I 4 HOH 38 69 69 HOH HOH B . I 4 HOH 39 71 71 HOH HOH B . I 4 HOH 40 74 74 HOH HOH B . I 4 HOH 41 76 76 HOH HOH B . I 4 HOH 42 77 77 HOH HOH B . I 4 HOH 43 78 78 HOH HOH B . I 4 HOH 44 83 83 HOH HOH B . I 4 HOH 45 87 87 HOH HOH B . I 4 HOH 46 88 88 HOH HOH B . I 4 HOH 47 90 90 HOH HOH B . I 4 HOH 48 96 96 HOH HOH B . I 4 HOH 49 98 98 HOH HOH B . I 4 HOH 50 99 99 HOH HOH B . I 4 HOH 51 101 101 HOH HOH B . I 4 HOH 52 104 104 HOH HOH B . I 4 HOH 53 106 106 HOH HOH B . I 4 HOH 54 107 107 HOH HOH B . I 4 HOH 55 109 109 HOH HOH B . I 4 HOH 56 111 111 HOH HOH B . I 4 HOH 57 112 112 HOH HOH B . I 4 HOH 58 116 116 HOH HOH B . I 4 HOH 59 118 118 HOH HOH B . I 4 HOH 60 120 120 HOH HOH B . I 4 HOH 61 124 124 HOH HOH B . I 4 HOH 62 126 126 HOH HOH B . I 4 HOH 63 129 129 HOH HOH B . I 4 HOH 64 130 130 HOH HOH B . I 4 HOH 65 132 132 HOH HOH B . I 4 HOH 66 133 133 HOH HOH B . I 4 HOH 67 134 134 HOH HOH B . I 4 HOH 68 135 135 HOH HOH B . I 4 HOH 69 136 136 HOH HOH B . I 4 HOH 70 137 137 HOH HOH B . I 4 HOH 71 141 141 HOH HOH B . I 4 HOH 72 143 143 HOH HOH B . I 4 HOH 73 145 145 HOH HOH B . I 4 HOH 74 149 149 HOH HOH B . I 4 HOH 75 150 150 HOH HOH B . I 4 HOH 76 152 152 HOH HOH B . I 4 HOH 77 153 153 HOH HOH B . I 4 HOH 78 154 154 HOH HOH B . I 4 HOH 79 155 155 HOH HOH B . I 4 HOH 80 159 159 HOH HOH B . I 4 HOH 81 160 160 HOH HOH B . I 4 HOH 82 161 161 HOH HOH B . I 4 HOH 83 163 163 HOH HOH B . I 4 HOH 84 164 164 HOH HOH B . I 4 HOH 85 165 165 HOH HOH B . I 4 HOH 86 169 169 HOH HOH B . I 4 HOH 87 172 172 HOH HOH B . I 4 HOH 88 174 174 HOH HOH B . I 4 HOH 89 175 175 HOH HOH B . I 4 HOH 90 176 176 HOH HOH B . I 4 HOH 91 177 177 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2960 ? 1 MORE -15 ? 1 'SSA (A^2)' 3990 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 147 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? A DG 2 ? A DG 2 ? 1_555 66.9 ? 2 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 172.6 ? 3 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 110.0 ? 4 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 110.9 ? 5 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 174.1 ? 6 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 72.9 ? 7 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 101.5 ? 8 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 69.5 ? 9 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 71.1 ? 10 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 116.4 ? 11 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 70.8 ? 12 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 112.0 ? 13 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 105.3 ? 14 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 71.5 ? 15 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 69.9 ? 16 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 71.9 ? 17 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 104.4 ? 18 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 115.5 ? 19 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 69.7 ? 20 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 172.7 ? 21 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 109.9 ? 22 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 112.6 ? 23 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 70.9 ? 24 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 71.5 ? 25 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 105.8 ? 26 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 109.9 ? 27 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 176.4 ? 28 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? C K . ? A K 14 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 70.7 ? 29 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? G K . ? B K 13 ? 1_555 O6 ? A DG 12 ? A DG 12 ? 1_555 103.2 ? 30 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? G K . ? B K 13 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 66.4 ? 31 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 13 ? 1_555 O6 ? B DG 4 ? B DG 4 ? 1_555 70.6 ? 32 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? G K . ? B K 13 ? 1_555 O2 ? B DT 5 ? B DT 5 ? 1_555 94.8 ? 33 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 13 ? 1_555 O2 ? B DT 5 ? B DT 5 ? 1_555 124.5 ? 34 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 13 ? 1_555 O2 ? B DT 5 ? B DT 5 ? 1_555 69.9 ? 35 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? G K . ? B K 13 ? 1_555 O2 ? B DT 7 ? B DT 7 ? 1_555 74.3 ? 36 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 13 ? 1_555 O2 ? B DT 7 ? B DT 7 ? 1_555 155.6 ? 37 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 13 ? 1_555 O2 ? B DT 7 ? B DT 7 ? 1_555 126.9 ? 38 O2 ? B DT 5 ? B DT 5 ? 1_555 K ? G K . ? B K 13 ? 1_555 O2 ? B DT 7 ? B DT 7 ? 1_555 79.7 ? 39 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? G K . ? B K 13 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 67.5 ? 40 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 13 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 68.9 ? 41 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 13 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 107.0 ? 42 O2 ? B DT 5 ? B DT 5 ? 1_555 K ? G K . ? B K 13 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 160.9 ? 43 O2 ? B DT 7 ? B DT 7 ? 1_555 K ? G K . ? B K 13 ? 1_555 O6 ? B DG 9 ? B DG 9 ? 1_555 88.2 ? 44 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 14 ? 1_555 141.4 ? 45 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 14 ? 1_555 96.1 ? 46 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 14 ? 1_555 152.2 ? 47 O2 ? B DT 5 ? B DT 5 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 14 ? 1_555 101.2 ? 48 O2 ? B DT 7 ? B DT 7 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 14 ? 1_555 74.4 ? 49 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 14 ? 1_555 89.6 ? 50 O6 ? A DG 1 ? A DG 1 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 162.6 ? 51 O6 ? A DG 12 ? A DG 12 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 70.5 ? 52 O6 ? B DG 4 ? B DG 4 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 96.3 ? 53 O2 ? B DT 5 ? B DT 5 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 76.9 ? 54 O2 ? B DT 7 ? B DT 7 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 118.3 ? 55 O6 ? B DG 9 ? B DG 9 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 122.1 ? 56 O ? I HOH . ? B HOH 14 ? 1_555 K ? G K . ? B K 13 ? 1_555 O ? I HOH . ? B HOH 24 ? 1_555 55.9 ? 57 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? A DG 3 ? A DG 3 ? 1_555 89.8 ? 58 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 131.0 ? 59 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 112.9 ? 60 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 108.3 ? 61 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 132.3 ? 62 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? A DG 11 ? A DG 11 ? 1_555 88.2 ? 63 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 157.1 ? 64 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 73.2 ? 65 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 71.1 ? 66 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 74.6 ? 67 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 70.8 ? 68 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 76.2 ? 69 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 154.2 ? 70 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 69.6 ? 71 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 3 ? B DG 3 ? 1_555 89.9 ? 72 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 71.1 ? 73 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 156.3 ? 74 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 72.9 ? 75 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 69.1 ? 76 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 128.8 ? 77 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 10 ? B DG 10 ? 1_555 109.0 ? 78 O6 ? A DG 2 ? A DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 76.4 ? 79 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 70.4 ? 80 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 72.1 ? 81 O6 ? A DG 11 ? A DG 11 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 155.6 ? 82 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 110.7 ? 83 O6 ? B DG 3 ? B DG 3 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 132.6 ? 84 O6 ? B DG 10 ? B DG 10 ? 1_555 K ? D K . ? A K 15 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 91.0 ? 85 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? A DG 4 ? A DG 4 ? 1_555 69.8 ? 86 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 167.0 ? 87 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 122.3 ? 88 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 101.8 ? 89 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 171.0 ? 90 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? A DG 10 ? A DG 10 ? 1_555 66.4 ? 91 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 104.4 ? 92 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 75.0 ? 93 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 76.3 ? 94 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 1 ? B DG 1 ? 1_555 111.1 ? 95 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 68.4 ? 96 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 112.6 ? 97 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 100.6 ? 98 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 65.5 ? 99 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 2 ? B DG 2 ? 1_555 67.6 ? 100 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 65.3 ? 101 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 106.6 ? 102 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 111.8 ? 103 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 66.0 ? 104 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 167.3 ? 105 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 11 ? B DG 11 ? 1_555 100.8 ? 106 O6 ? A DG 3 ? A DG 3 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 113.6 ? 107 O6 ? A DG 4 ? A DG 4 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 78.6 ? 108 O6 ? A DG 9 ? A DG 9 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 75.6 ? 109 O6 ? A DG 10 ? A DG 10 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 102.7 ? 110 O6 ? B DG 1 ? B DG 1 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 121.7 ? 111 O6 ? B DG 2 ? B DG 2 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 167.8 ? 112 O6 ? B DG 11 ? B DG 11 ? 1_555 K ? E K . ? A K 16 ? 1_555 O6 ? B DG 12 ? B DG 12 ? 1_555 70.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-11-16 4 'Structure model' 1 3 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.value' 21 4 'Structure model' '_struct_conn.pdbx_dist_value' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 37 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM . ? package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHENIX 1.6.1_357 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 152 ? ? O B HOH 174 ? ? 2.13 2 1 O A HOH 62 ? ? O A HOH 100 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O B HOH 164 ? ? 1_555 O B HOH 164 ? ? 2_655 1.99 2 1 O B HOH 154 ? ? 1_555 O B HOH 161 ? ? 4_456 2.05 3 1 O B HOH 163 ? ? 1_555 O B HOH 164 ? ? 2_655 2.18 4 1 O B HOH 35 ? ? 1_555 O B HOH 35 ? ? 2_655 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.33 108.30 3.03 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.26 108.30 3.96 0.30 N 3 1 C2 A DG 2 ? ? N3 A DG 2 ? ? C4 A DG 2 ? ? 115.78 111.90 3.88 0.50 N 4 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 115.28 111.50 3.78 0.50 N 5 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.51 108.30 2.21 0.30 N 6 1 C2 A DG 3 ? ? N3 A DG 3 ? ? C4 A DG 3 ? ? 115.30 111.90 3.40 0.50 N 7 1 C5 A DG 3 ? ? C6 A DG 3 ? ? N1 A DG 3 ? ? 115.34 111.50 3.84 0.50 N 8 1 C2 A DG 4 ? ? N3 A DG 4 ? ? C4 A DG 4 ? ? 115.31 111.90 3.41 0.50 N 9 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 114.64 111.50 3.14 0.50 N 10 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 112.94 108.30 4.64 0.30 N 11 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.83 108.30 3.53 0.30 N 12 1 "C5'" A DG 10 ? ? "C4'" A DG 10 ? ? "C3'" A DG 10 ? ? 124.61 115.70 8.91 1.20 N 13 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.58 108.30 4.28 0.30 N 14 1 C5 A DG 11 ? ? C6 A DG 11 ? ? N1 A DG 11 ? ? 115.30 111.50 3.80 0.50 N 15 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 115.32 108.30 7.02 0.30 N 16 1 "O4'" B DG 2 ? ? "C1'" B DG 2 ? ? N9 B DG 2 ? ? 111.72 108.30 3.42 0.30 N 17 1 C8 B DG 3 ? ? N9 B DG 3 ? ? C4 B DG 3 ? ? 103.47 106.40 -2.93 0.40 N 18 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 113.47 108.30 5.17 0.30 N 19 1 C5 B DG 4 ? ? C6 B DG 4 ? ? N1 B DG 4 ? ? 114.63 111.50 3.13 0.50 N 20 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 113.28 108.30 4.98 0.30 N 21 1 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 114.47 108.30 6.17 0.30 N 22 1 C5 B DG 9 ? ? C6 B DG 9 ? ? N1 B DG 9 ? ? 114.99 111.50 3.49 0.50 N 23 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 112.13 108.30 3.83 0.30 N 24 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 113.89 108.30 5.59 0.30 N 25 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.03 108.30 2.73 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 HOH O O N N 74 HOH H1 H N N 75 HOH H2 H N N 76 K K K N N 77 RNR N1 N Y N 78 RNR C2 C Y N 79 RNR C3 C Y N 80 RNR C4 C Y N 81 RNR C5 C Y N 82 RNR C6 C Y N 83 RNR C7 C Y N 84 RNR C8 C Y N 85 RNR C9 C Y N 86 RNR C10 C Y N 87 RNR C11 C Y N 88 RNR C12 C Y N 89 RNR C13 C Y N 90 RNR C14 C Y N 91 RNR N15 N N N 92 RNR C16 C N N 93 RNR O17 O N N 94 RNR C18 C N N 95 RNR C19 C N N 96 RNR N20 N N N 97 RNR C21 C N N 98 RNR C22 C N R 99 RNR F23 F N N 100 RNR C24 C N N 101 RNR C25 C N N 102 RNR N26 N N N 103 RNR C27 C N N 104 RNR O28 O N N 105 RNR C29 C N N 106 RNR C30 C N N 107 RNR N31 N N N 108 RNR C32 C N N 109 RNR C33 C N R 110 RNR F34 F N N 111 RNR C35 C N N 112 RNR C36 C N N 113 RNR H3 H N N 114 RNR H5 H N N 115 RNR H6 H N N 116 RNR H8 H N N 117 RNR H10 H N N 118 RNR H11 H N N 119 RNR H13 H N N 120 RNR HN15 H N N 121 RNR H18 H N N 122 RNR H18A H N N 123 RNR H19 H N N 124 RNR H19A H N N 125 RNR H21 H N N 126 RNR H21A H N N 127 RNR H22 H N N 128 RNR H24 H N N 129 RNR H24A H N N 130 RNR H25 H N N 131 RNR H25A H N N 132 RNR HN26 H N N 133 RNR H29 H N N 134 RNR H29A H N N 135 RNR H30 H N N 136 RNR H30A H N N 137 RNR H32 H N N 138 RNR H32A H N N 139 RNR H33 H N N 140 RNR H35 H N N 141 RNR H35A H N N 142 RNR H36 H N N 143 RNR H36A H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 HOH O H1 sing N N 77 HOH O H2 sing N N 78 RNR N1 C2 doub Y N 79 RNR N1 C14 sing Y N 80 RNR C2 C3 sing Y N 81 RNR C2 C7 sing Y N 82 RNR C3 C4 doub Y N 83 RNR C4 C5 sing Y N 84 RNR C4 N26 sing N N 85 RNR C5 C6 doub Y N 86 RNR C6 C7 sing Y N 87 RNR C7 C8 doub Y N 88 RNR C8 C9 sing Y N 89 RNR C9 C10 sing Y N 90 RNR C9 C14 doub Y N 91 RNR C10 C11 doub Y N 92 RNR C11 C12 sing Y N 93 RNR C12 C13 doub Y N 94 RNR C12 N15 sing N N 95 RNR C13 C14 sing Y N 96 RNR N15 C16 sing N N 97 RNR C16 O17 doub N N 98 RNR C16 C18 sing N N 99 RNR C18 C19 sing N N 100 RNR C19 N20 sing N N 101 RNR N20 C21 sing N N 102 RNR N20 C25 sing N N 103 RNR C21 C22 sing N N 104 RNR C22 F23 sing N N 105 RNR C22 C24 sing N N 106 RNR C24 C25 sing N N 107 RNR N26 C27 sing N N 108 RNR C27 O28 doub N N 109 RNR C27 C29 sing N N 110 RNR C29 C30 sing N N 111 RNR C30 N31 sing N N 112 RNR N31 C32 sing N N 113 RNR N31 C36 sing N N 114 RNR C32 C33 sing N N 115 RNR C33 F34 sing N N 116 RNR C33 C35 sing N N 117 RNR C35 C36 sing N N 118 RNR C3 H3 sing N N 119 RNR C5 H5 sing N N 120 RNR C6 H6 sing N N 121 RNR C8 H8 sing N N 122 RNR C10 H10 sing N N 123 RNR C11 H11 sing N N 124 RNR C13 H13 sing N N 125 RNR N15 HN15 sing N N 126 RNR C18 H18 sing N N 127 RNR C18 H18A sing N N 128 RNR C19 H19 sing N N 129 RNR C19 H19A sing N N 130 RNR C21 H21 sing N N 131 RNR C21 H21A sing N N 132 RNR C22 H22 sing N N 133 RNR C24 H24 sing N N 134 RNR C24 H24A sing N N 135 RNR C25 H25 sing N N 136 RNR C25 H25A sing N N 137 RNR N26 HN26 sing N N 138 RNR C29 H29 sing N N 139 RNR C29 H29A sing N N 140 RNR C30 H30 sing N N 141 RNR C30 H30A sing N N 142 RNR C32 H32 sing N N 143 RNR C32 H32A sing N N 144 RNR C33 H33 sing N N 145 RNR C35 H35 sing N N 146 RNR C35 H35A sing N N 147 RNR C36 H36 sing N N 148 RNR C36 H36A sing N N 149 # _ndb_struct_conf_na.entry_id 3NYP _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'POTASSIUM ION' K 3 "3,6-bis(3-(3'-(R)-fluoropyrrolindino)propionamido)acridine" RNR 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1L1H _pdbx_initial_refinement_model.details 'PDB entry 1L1H' #