HEADER HYDROLASE/HYDROLASE SUBSTRATE 16-JUL-10 3NZI TITLE SUBSTRATE INDUCED REMODELING OF THE ACTIVE SITE REGULATES HTRA1 TITLE 2 ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE HTRA1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 158-480; COMPND 5 SYNONYM: L56, SERINE PROTEASE 11; COMPND 6 EC: 3.4.21.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CITRATE SYNTHASE; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 371-377; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HTRA1, HTRA, PRSS11; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: PEPTIDYL BORONIC ACID INHIBITOR KEYWDS SERINE PROTEASE, DEGP, HTRA, PROTEASE, HYDROLASE-PEPTIDE INHIBITOR KEYWDS 2 COMPLEX, HYDROLASE-HYDROLASE SUBSTRATE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.TRUEBESTEIN,A.TENNSTAEDT,P.HAUSKE,T.KROJER,M.KAISER,T.CLAUSEN, AUTHOR 2 M.EHRMANN REVDAT 5 22-NOV-23 3NZI 1 REMARK REVDAT 4 06-SEP-23 3NZI 1 SEQADV LINK REVDAT 3 18-APR-18 3NZI 1 REMARK REVDAT 2 30-MAR-11 3NZI 1 JRNL REVDAT 1 23-FEB-11 3NZI 0 JRNL AUTH L.TRUEBESTEIN,A.TENNSTAEDT,T.MONIG,T.KROJER,F.CANELLAS, JRNL AUTH 2 M.KAISER,T.CLAUSEN,M.EHRMANN JRNL TITL SUBSTRATE-INDUCED REMODELING OF THE ACTIVE SITE REGULATES JRNL TITL 2 HUMAN HTRA1 ACTIVITY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 386 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21297635 JRNL DOI 10.1038/NSMB.2013 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 651 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 889 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1632 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 81.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.91000 REMARK 3 B22 (A**2) : 2.91000 REMARK 3 B33 (A**2) : -4.36000 REMARK 3 B12 (A**2) : 1.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.255 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.965 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1660 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1104 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2250 ; 1.265 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2723 ; 0.839 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 6.901 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 64 ;34.568 ;24.844 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;17.687 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;10.789 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1829 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 306 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 3NZI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9102 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1LCY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0M LISO4, 0.1M SODIUM CITRATE, 0.5M REMARK 280 (NH4)2SO4, PH 5.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.98250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.58946 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.44533 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 52.98250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 30.58946 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 39.44533 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 52.98250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 30.58946 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 39.44533 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.17892 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 78.89067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 61.17892 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 78.89067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 61.17892 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 78.89067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 157 REMARK 465 GLY A 158 REMARK 465 GLN A 159 REMARK 465 GLN A 371 REMARK 465 ALA A 372 REMARK 465 LYS A 373 REMARK 465 GLY A 374 REMARK 465 LYS A 375 REMARK 465 ALA A 376 REMARK 465 ILE A 377 REMARK 465 THR A 378 REMARK 465 LYS A 379 REMARK 465 LYS A 380 REMARK 465 LYS A 381 REMARK 465 TYR A 382 REMARK 465 ILE A 383 REMARK 465 GLY A 384 REMARK 465 ILE A 385 REMARK 465 ARG A 386 REMARK 465 MET A 387 REMARK 465 MET A 388 REMARK 465 SER A 389 REMARK 465 LEU A 390 REMARK 465 THR A 391 REMARK 465 SER A 392 REMARK 465 SER A 393 REMARK 465 LYS A 394 REMARK 465 ALA A 395 REMARK 465 LYS A 396 REMARK 465 GLU A 397 REMARK 465 LEU A 398 REMARK 465 LYS A 399 REMARK 465 ASP A 400 REMARK 465 ARG A 401 REMARK 465 HIS A 402 REMARK 465 ARG A 403 REMARK 465 ASP A 404 REMARK 465 PHE A 405 REMARK 465 PRO A 406 REMARK 465 ASP A 407 REMARK 465 VAL A 408 REMARK 465 ILE A 409 REMARK 465 SER A 410 REMARK 465 GLY A 411 REMARK 465 ALA A 412 REMARK 465 TYR A 413 REMARK 465 ILE A 414 REMARK 465 ILE A 415 REMARK 465 GLU A 416 REMARK 465 VAL A 417 REMARK 465 ILE A 418 REMARK 465 PRO A 419 REMARK 465 ASP A 420 REMARK 465 THR A 421 REMARK 465 PRO A 422 REMARK 465 ALA A 423 REMARK 465 GLU A 424 REMARK 465 ALA A 425 REMARK 465 GLY A 426 REMARK 465 GLY A 427 REMARK 465 LEU A 428 REMARK 465 LYS A 429 REMARK 465 GLU A 430 REMARK 465 ASN A 431 REMARK 465 ASP A 432 REMARK 465 VAL A 433 REMARK 465 ILE A 434 REMARK 465 ILE A 435 REMARK 465 SER A 436 REMARK 465 ILE A 437 REMARK 465 ASN A 438 REMARK 465 GLY A 439 REMARK 465 GLN A 440 REMARK 465 SER A 441 REMARK 465 VAL A 442 REMARK 465 VAL A 443 REMARK 465 SER A 444 REMARK 465 ALA A 445 REMARK 465 ASN A 446 REMARK 465 ASP A 447 REMARK 465 VAL A 448 REMARK 465 SER A 449 REMARK 465 ASP A 450 REMARK 465 VAL A 451 REMARK 465 ILE A 452 REMARK 465 LYS A 453 REMARK 465 ARG A 454 REMARK 465 GLU A 455 REMARK 465 SER A 456 REMARK 465 THR A 457 REMARK 465 LEU A 458 REMARK 465 ASN A 459 REMARK 465 MET A 460 REMARK 465 VAL A 461 REMARK 465 VAL A 462 REMARK 465 ARG A 463 REMARK 465 ARG A 464 REMARK 465 GLY A 465 REMARK 465 ASN A 466 REMARK 465 GLU A 467 REMARK 465 ASP A 468 REMARK 465 ILE A 469 REMARK 465 MET A 470 REMARK 465 ILE A 471 REMARK 465 THR A 472 REMARK 465 VAL A 473 REMARK 465 ILE A 474 REMARK 465 PRO A 475 REMARK 465 GLU A 476 REMARK 465 GLU A 477 REMARK 465 ILE A 478 REMARK 465 ASP A 479 REMARK 465 PRO A 480 REMARK 465 ARG A 481 REMARK 465 SER A 482 REMARK 465 LEU A 483 REMARK 465 GLU A 484 REMARK 465 HIS A 485 REMARK 465 HIS A 486 REMARK 465 HIS A 487 REMARK 465 HIS A 488 REMARK 465 HIS A 489 REMARK 465 HIS A 490 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ASP A 161 CG OD1 OD2 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 369 CG OD1 OD2 REMARK 470 ARG A 370 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 164 129.46 -39.75 REMARK 500 VAL A 201 -71.43 -99.17 REMARK 500 THR A 223 104.37 -39.20 REMARK 500 ASN A 224 65.45 66.05 REMARK 500 ALA A 236 -149.38 -101.73 REMARK 500 THR A 299 135.99 -170.99 REMARK 500 LEU A 309 93.92 -64.39 REMARK 500 SER A 328 129.53 -30.49 REMARK 500 THR A 344 -52.30 -135.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF CITRATE SYNTHASE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NUM RELATED DB: PDB REMARK 900 RELATED ID: 3NWU RELATED DB: PDB DBREF 3NZI A 158 480 UNP Q92743 HTRA1_HUMAN 158 480 DBREF 3NZI B 2 8 UNP Q80X68 Q80X68_MOUSE 371 377 SEQADV 3NZI MET A 157 UNP Q92743 EXPRESSION TAG SEQADV 3NZI ARG A 481 UNP Q92743 EXPRESSION TAG SEQADV 3NZI SER A 482 UNP Q92743 EXPRESSION TAG SEQADV 3NZI LEU A 483 UNP Q92743 EXPRESSION TAG SEQADV 3NZI GLU A 484 UNP Q92743 EXPRESSION TAG SEQADV 3NZI HIS A 485 UNP Q92743 EXPRESSION TAG SEQADV 3NZI HIS A 486 UNP Q92743 EXPRESSION TAG SEQADV 3NZI HIS A 487 UNP Q92743 EXPRESSION TAG SEQADV 3NZI HIS A 488 UNP Q92743 EXPRESSION TAG SEQADV 3NZI HIS A 489 UNP Q92743 EXPRESSION TAG SEQADV 3NZI HIS A 490 UNP Q92743 EXPRESSION TAG SEQRES 1 A 334 MET GLY GLN GLU ASP PRO ASN SER LEU ARG HIS LYS TYR SEQRES 2 A 334 ASN PHE ILE ALA ASP VAL VAL GLU LYS ILE ALA PRO ALA SEQRES 3 A 334 VAL VAL HIS ILE GLU LEU PHE ARG LYS LEU PRO PHE SER SEQRES 4 A 334 LYS ARG GLU VAL PRO VAL ALA SER GLY SER GLY PHE ILE SEQRES 5 A 334 VAL SER GLU ASP GLY LEU ILE VAL THR ASN ALA HIS VAL SEQRES 6 A 334 VAL THR ASN LYS HIS ARG VAL LYS VAL GLU LEU LYS ASN SEQRES 7 A 334 GLY ALA THR TYR GLU ALA LYS ILE LYS ASP VAL ASP GLU SEQRES 8 A 334 LYS ALA ASP ILE ALA LEU ILE LYS ILE ASP HIS GLN GLY SEQRES 9 A 334 LYS LEU PRO VAL LEU LEU LEU GLY ARG SER SER GLU LEU SEQRES 10 A 334 ARG PRO GLY GLU PHE VAL VAL ALA ILE GLY SER PRO PHE SEQRES 11 A 334 SER LEU GLN ASN THR VAL THR THR GLY ILE VAL SER THR SEQRES 12 A 334 THR GLN ARG GLY GLY LYS GLU LEU GLY LEU ARG ASN SER SEQRES 13 A 334 ASP MET ASP TYR ILE GLN THR ASP ALA ILE ILE ASN TYR SEQRES 14 A 334 GLY ASN SER GLY GLY PRO LEU VAL ASN LEU ASP GLY GLU SEQRES 15 A 334 VAL ILE GLY ILE ASN THR LEU LYS VAL THR ALA GLY ILE SEQRES 16 A 334 SER PHE ALA ILE PRO SER ASP LYS ILE LYS LYS PHE LEU SEQRES 17 A 334 THR GLU SER HIS ASP ARG GLN ALA LYS GLY LYS ALA ILE SEQRES 18 A 334 THR LYS LYS LYS TYR ILE GLY ILE ARG MET MET SER LEU SEQRES 19 A 334 THR SER SER LYS ALA LYS GLU LEU LYS ASP ARG HIS ARG SEQRES 20 A 334 ASP PHE PRO ASP VAL ILE SER GLY ALA TYR ILE ILE GLU SEQRES 21 A 334 VAL ILE PRO ASP THR PRO ALA GLU ALA GLY GLY LEU LYS SEQRES 22 A 334 GLU ASN ASP VAL ILE ILE SER ILE ASN GLY GLN SER VAL SEQRES 23 A 334 VAL SER ALA ASN ASP VAL SER ASP VAL ILE LYS ARG GLU SEQRES 24 A 334 SER THR LEU ASN MET VAL VAL ARG ARG GLY ASN GLU ASP SEQRES 25 A 334 ILE MET ILE THR VAL ILE PRO GLU GLU ILE ASP PRO ARG SEQRES 26 A 334 SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 7 ASP PRO MET PHE LYS LEU B2V MODRES 3NZI B2V B 8 VAL VALINE BORONIC ACID HET B2V B 8 8 HETNAM B2V VALINE BORONIC ACID FORMUL 2 B2V C4 H12 B N O2 HELIX 1 1 SER A 164 ASN A 170 1 7 HELIX 2 2 ASN A 170 ALA A 180 1 11 HELIX 3 3 ALA A 219 THR A 223 1 5 HELIX 4 4 ARG A 269 LEU A 273 5 5 HELIX 5 5 SER A 284 LEU A 288 5 5 HELIX 6 6 LYS A 305 LEU A 307 5 3 HELIX 7 7 SER A 357 ASP A 369 1 13 SHEET 1 A 6 ARG A 227 GLU A 231 0 SHEET 2 A 6 VAL A 183 LYS A 191 -1 N HIS A 185 O GLU A 231 SHEET 3 A 6 GLU A 198 ILE A 208 -1 O GLY A 206 N VAL A 184 SHEET 4 A 6 LEU A 214 ASN A 218 -1 O VAL A 216 N PHE A 207 SHEET 5 A 6 ILE A 251 LYS A 255 -1 O ILE A 254 N ILE A 215 SHEET 6 A 6 LYS A 241 ASP A 246 -1 N LYS A 243 O LEU A 253 SHEET 1 B 8 LYS B 6 LEU B 7 0 SHEET 2 B 8 VAL A 339 THR A 348 -1 N LYS A 346 O LYS B 6 SHEET 3 B 8 ILE A 351 PRO A 356 -1 O PHE A 353 N THR A 344 SHEET 4 B 8 ASP A 315 THR A 319 -1 N THR A 319 O SER A 352 SHEET 5 B 8 THR A 291 GLY A 303 -1 N THR A 299 O GLN A 318 SHEET 6 B 8 PHE A 278 GLY A 283 -1 N ALA A 281 O THR A 293 SHEET 7 B 8 PRO A 331 ASN A 334 -1 O VAL A 333 N VAL A 280 SHEET 8 B 8 VAL A 339 THR A 348 -1 O GLY A 341 N LEU A 332 LINK OG SER A 328 B B2V B 8 1555 1555 1.55 LINK C LEU B 7 N B2V B 8 1555 1555 1.34 SITE 1 AC1 10 HIS A 220 LEU A 309 ASN A 324 TYR A 325 SITE 2 AC1 10 GLY A 326 ASN A 327 SER A 328 THR A 344 SITE 3 AC1 10 LEU A 345 LYS A 346 CRYST1 105.965 105.965 118.336 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009437 0.005449 0.000000 0.00000 SCALE2 0.000000 0.010897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008450 0.00000