HEADER LIGASE 16-JUL-10 3NZT TITLE 2.0 ANGSTROM CRYSTAL STRUCTURE OF GLUTAMATE--CYSTEINE LIGASE (GSHA) TITLE 2 FTOM FRANCISELLA TULARENSIS IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE--CYSTEINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.2.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. TULARENSIS; SOURCE 3 ORGANISM_TAXID: 119856; SOURCE 4 STRAIN: SCHU S4; SOURCE 5 GENE: FTT_0367C, GSHA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-DE3 (MAGIC); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMSCG7 KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, ALPHA AND BETA PROTEINS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR,L.PAPAZISI, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 06-SEP-23 3NZT 1 REMARK SEQADV REVDAT 2 08-NOV-17 3NZT 1 REMARK REVDAT 1 28-JUL-10 3NZT 0 JRNL AUTH G.MINASOV,A.HALAVATY,L.SHUVALOVA,I.DUBROVSKA,J.WINSOR, JRNL AUTH 2 L.PAPAZISI,W.F.ANDERSON JRNL TITL 2.0 ANGSTROM CRYSTAL STRUCTURE OF GLUTAMATE--CYSTEINE LIGASE JRNL TITL 2 (GSHA) FTOM FRANCISELLA TULARENSIS IN COMPLEX WITH AMP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 44206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2351 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3222 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 78 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.84000 REMARK 3 B22 (A**2) : 0.84000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4267 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2896 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5782 ; 1.372 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7099 ; 0.848 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 526 ; 3.149 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;32.071 ;25.098 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 792 ;10.480 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 629 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4733 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 825 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2577 ; 0.852 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1037 ; 0.244 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4174 ; 1.564 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1690 ; 2.674 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 4.324 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 44.6794 33.8717 23.3575 REMARK 3 T TENSOR REMARK 3 T11: 0.0230 T22: 0.0274 REMARK 3 T33: 0.0305 T12: 0.0029 REMARK 3 T13: -0.0167 T23: -0.0222 REMARK 3 L TENSOR REMARK 3 L11: 1.8067 L22: 1.4367 REMARK 3 L33: 1.6361 L12: 0.3482 REMARK 3 L13: 0.2311 L23: 0.6713 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: -0.1064 S13: 0.1049 REMARK 3 S21: -0.1516 S22: -0.0197 S23: 0.0796 REMARK 3 S31: -0.1065 S32: 0.0170 S33: 0.0865 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 218 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 61.1597 30.2397 28.5789 REMARK 3 T TENSOR REMARK 3 T11: 0.0673 T22: 0.1618 REMARK 3 T33: 0.0981 T12: 0.0039 REMARK 3 T13: -0.0236 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.2310 L22: 3.0209 REMARK 3 L33: 0.6856 L12: 1.8269 REMARK 3 L13: 0.5130 L23: 0.4120 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.0324 S13: -0.1560 REMARK 3 S21: 0.0130 S22: 0.0694 S23: -0.2535 REMARK 3 S31: 0.0698 S32: 0.2738 S33: -0.0786 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 310 A 429 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9707 17.5508 14.1645 REMARK 3 T TENSOR REMARK 3 T11: 0.0945 T22: 0.0179 REMARK 3 T33: 0.0885 T12: -0.0168 REMARK 3 T13: -0.0062 T23: -0.0320 REMARK 3 L TENSOR REMARK 3 L11: 1.2435 L22: 2.8581 REMARK 3 L33: 2.3707 L12: 0.8495 REMARK 3 L13: 0.2515 L23: 0.8295 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: 0.0775 S13: -0.2370 REMARK 3 S21: -0.2163 S22: 0.0179 S23: 0.0167 REMARK 3 S31: 0.1717 S32: -0.0390 S33: 0.0528 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 430 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): 43.0803 41.7203 30.4883 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.0880 REMARK 3 T33: 0.1237 T12: 0.0178 REMARK 3 T13: -0.0351 T23: -0.0647 REMARK 3 L TENSOR REMARK 3 L11: 3.0856 L22: 1.2136 REMARK 3 L33: 1.7255 L12: 0.5493 REMARK 3 L13: -0.3652 L23: 0.0968 REMARK 3 S TENSOR REMARK 3 S11: 0.1106 S12: -0.3994 S13: 0.1645 REMARK 3 S21: -0.1213 S22: -0.0759 S23: 0.1665 REMARK 3 S31: -0.2120 S32: -0.1078 S33: -0.0347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NZT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46618 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2D32 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 7.3 MG/ML, 0.5M SODIUM REMARK 280 CHLORIDE, TRIS-HCL (PH 8.3), 1MM AMPPNP, 1MM MAGNESIUM CHLORIDE, REMARK 280 SCREEN: CLASSICSII, DROP A2, 0.1M SODIUM ACETATE (PH 4.5), 2M REMARK 280 AMMONIUM SULPHATE, CRYO: 1.8M AMMONIUM SULPHATE, 25% SUCROSE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.97867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.48933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.73400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.24467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 126.22333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 TYR A 221 REMARK 465 THR A 222 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLY A 220 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 220 N GLY A 220 CA -0.267 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 220 N - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 45 -156.22 -150.84 REMARK 500 ASP A 47 -122.28 -99.94 REMARK 500 LYS A 194 108.89 -57.02 REMARK 500 GLN A 433 -76.67 -43.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 219 -14.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 513 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP01828 RELATED DB: TARGETDB DBREF 3NZT A 1 501 UNP Q5NHS8 Q5NHS8_FRATT 1 501 SEQADV 3NZT MET A -23 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT HIS A -22 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT HIS A -21 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT HIS A -20 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT HIS A -19 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT HIS A -18 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT HIS A -17 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT SER A -16 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT SER A -15 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT GLY A -14 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT VAL A -13 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT ASP A -12 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT LEU A -11 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT GLY A -10 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT THR A -9 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT GLU A -8 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT ASN A -7 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT LEU A -6 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT TYR A -5 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT PHE A -4 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT GLN A -3 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT SER A -2 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT ASN A -1 UNP Q5NHS8 EXPRESSION TAG SEQADV 3NZT ALA A 0 UNP Q5NHS8 EXPRESSION TAG SEQRES 1 A 525 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 525 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET TYR SEQRES 3 A 525 ASP PHE LYS LYS ILE ASN ASN LEU ARG GLY ILE GLU ARG SEQRES 4 A 525 GLU THR LEU ARG VAL THR ASP CYS GLY ASN LEU ALA THR SEQRES 5 A 525 SER ASN HIS PRO ASP GLY LEU GLY HIS LYS LEU THR ASN SEQRES 6 A 525 ASN SER ILE THR VAL ASP PHE SER GLU ASN LEU LEU GLU SEQRES 7 A 525 LEU ILE THR LYS PRO HIS ASP SER ILE ASP LYS ALA ILE SEQRES 8 A 525 GLY GLU LEU TYR GLN LEU SER ALA PHE THR LEU ASP ASN SEQRES 9 A 525 MET HIS SER ASP GLU ILE ILE LEU ASN THR SER MET PRO SEQRES 10 A 525 LEU SER ALA ASN ASP ASN ASP ILE GLN GLU ALA ASP PHE SEQRES 11 A 525 GLY SER SER ASN SER GLY ARG MET LYS ARG VAL TYR ARG SEQRES 12 A 525 LYS GLY LEU SER ALA ARG TYR GLY LYS ILE MET GLN ILE SEQRES 13 A 525 ILE SER GLY ILE HIS TYR ASN PHE SER PHE ASP LYS ASP SEQRES 14 A 525 LEU ILE SER ASN ILE ALA THR ASN LYS GLN VAL SER ILE SEQRES 15 A 525 SER ASP ILE TYR PHE ASP VAL LEU ASN ASN TYR PHE GLU SEQRES 16 A 525 PHE MET TRP LEU LEU PRO TYR LEU PHE GLY ALA SER PRO SEQRES 17 A 525 ILE CYS ALA LYS THR SER VAL LYS ASN LYS PRO ASP TYR SEQRES 18 A 525 LEU SER VAL LEU ASP ASP LYS PHE TYR VAL GLY GLU TYR SEQRES 19 A 525 ALA THR SER LEU ARG MET SER ASP LEU GLY TYR THR SER SEQRES 20 A 525 PRO ALA GLN LYS ASP LEU ALA ILE SER TYR ASP ASN VAL SEQRES 21 A 525 LYS ALA TYR VAL LYS ASP LEU ILE GLN ALA THR ASP ASP SEQRES 22 A 525 THR PHE ALA ASP TYR LYS ARG ILE GLY LEU TYR ASN SER SEQRES 23 A 525 GLN GLY GLN ARG ILE GLN LEU ASN ASP GLY ILE LEU GLN SEQRES 24 A 525 ILE GLU ASN GLU TYR TYR SER ALA ILE ARG PRO LYS GLN SEQRES 25 A 525 ILE ALA LYS ARG GLY GLU ARG PRO ALA CYS ALA LEU TYR SEQRES 26 A 525 ASN ARG GLY VAL GLU TYR VAL GLU VAL ARG VAL LEU ASP SEQRES 27 A 525 VAL ASP PRO PHE GLU PRO VAL GLY ILE SER LYS ASP THR SEQRES 28 A 525 ALA LEU PHE VAL GLU VAL MET LEU MET THR CYS LEU ASP SEQRES 29 A 525 LYS ASP ALA LYS LYS TYR HIS LYS ASP ILE ILE LYS GLN SEQRES 30 A 525 ALA LYS GLN ASN LEU THR ALA VAL ALA ILE GLN GLY ARG SEQRES 31 A 525 ASN PRO GLN LEU LYS LEU LYS LYS LEU ASP ASP ASP SER SEQRES 32 A 525 GLU ILE LEU LEU LYS ASP TYR ALA LEU GLU LEU PHE ASP SEQRES 33 A 525 GLU ILE GLU ALA VAL ALA LYS LYS MET PRO LYS GLU TYR SEQRES 34 A 525 LEU ASP ALA VAL GLU ILE GLN LYS ARG LYS VAL LEU ASP SEQRES 35 A 525 ILE SER GLN THR PRO SER ALA LYS ILE ILE GLU LEU ALA SEQRES 36 A 525 ARG GLN HIS GLY TYR LYS LYS PHE ILE LEU ASP ILE SER SEQRES 37 A 525 ARG ARG VAL SER GLN GLN PHE ARG SER TYR GLU LEU PRO SEQRES 38 A 525 ALA ALA ILE VAL ALA LYS LEU LYS ASP GLN ALA GLY GLN SEQRES 39 A 525 SER VAL ALA ALA GLU LYS GLU LEU VAL ALA ASN ASP LYS SEQRES 40 A 525 ILE SER LEU ASP GLU TYR ILE ASN ARG TYR TYR LYS SER SEQRES 41 A 525 SER LYS GLY CYS CYS HET AMP A 502 23 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HET SO4 A 511 5 HET SO4 A 512 5 HET SO4 A 513 5 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 SO4 11(O4 S 2-) FORMUL 14 HOH *328(H2 O) HELIX 1 1 PRO A 32 GLY A 36 5 5 HELIX 2 2 SER A 62 MET A 81 1 20 HELIX 3 3 ASN A 97 ILE A 101 5 5 HELIX 4 4 SER A 109 GLY A 127 1 19 HELIX 5 5 LYS A 128 ILE A 133 5 6 HELIX 6 6 ASP A 143 GLN A 155 1 13 HELIX 7 7 SER A 157 MET A 173 1 17 HELIX 8 8 TRP A 174 GLY A 181 1 8 HELIX 9 9 THR A 189 VAL A 191 5 3 HELIX 10 10 SER A 213 SER A 217 5 5 HELIX 11 11 SER A 223 ASP A 228 1 6 HELIX 12 12 ASN A 235 ASP A 249 1 15 HELIX 13 13 PHE A 251 GLY A 258 1 8 HELIX 14 14 ILE A 276 TYR A 280 5 5 HELIX 15 15 ARG A 295 GLY A 304 1 10 HELIX 16 16 SER A 324 LYS A 341 1 18 HELIX 17 17 HIS A 347 GLY A 365 1 19 HELIX 18 18 LEU A 383 LYS A 399 1 17 HELIX 19 19 PRO A 402 ASP A 418 1 17 HELIX 20 20 ILE A 419 GLN A 421 5 3 HELIX 21 21 THR A 422 GLY A 435 1 14 HELIX 22 22 GLY A 435 TYR A 454 1 20 HELIX 23 23 PRO A 457 ASP A 482 1 26 HELIX 24 24 SER A 485 SER A 496 1 12 HELIX 25 25 SER A 497 GLY A 499 5 3 SHEET 1 A 4 ILE A 44 VAL A 46 0 SHEET 2 A 4 LEU A 52 ILE A 56 -1 O GLU A 54 N THR A 45 SHEET 3 A 4 LEU A 10 THR A 21 -1 N ARG A 15 O LEU A 55 SHEET 4 A 4 GLU A 85 ILE A 87 -1 O ILE A 86 N VAL A 20 SHEET 1 B 6 ILE A 44 VAL A 46 0 SHEET 2 B 6 LEU A 52 ILE A 56 -1 O GLU A 54 N THR A 45 SHEET 3 B 6 LEU A 10 THR A 21 -1 N ARG A 15 O LEU A 55 SHEET 4 B 6 ILE A 136 SER A 141 -1 O ASN A 139 N GLY A 12 SHEET 5 B 6 TYR A 307 VAL A 310 -1 O VAL A 310 N TYR A 138 SHEET 6 B 6 ILE A 284 LYS A 287 -1 N LYS A 287 O TYR A 307 SHEET 1 C 3 ILE A 185 ALA A 187 0 SHEET 2 C 3 PHE A 205 VAL A 207 -1 O TYR A 206 N CYS A 186 SHEET 3 C 3 SER A 199 VAL A 200 -1 N SER A 199 O VAL A 207 SHEET 1 D 2 LYS A 371 LYS A 373 0 SHEET 2 D 2 GLU A 380 LEU A 382 -1 O ILE A 381 N LEU A 372 SSBOND 1 CYS A 298 CYS A 500 1555 1555 2.06 SITE 1 AC1 17 LEU A 10 GLY A 12 ILE A 13 ILE A 56 SITE 2 AC1 17 THR A 57 LYS A 58 PRO A 59 ASN A 139 SITE 3 AC1 17 SER A 141 ILE A 289 GLU A 306 TYR A 307 SITE 4 AC1 17 HOH A 741 HOH A 782 HOH A 795 HOH A 805 SITE 5 AC1 17 HOH A 831 SITE 1 AC2 8 SER A 62 ILE A 63 ASP A 64 LYS A 325 SITE 2 AC2 8 GLU A 404 HOH A 636 HOH A 833 HOH A 835 SITE 1 AC3 5 THR A 250 LYS A 255 SER A 379 GLU A 380 SITE 2 AC3 5 HOH A 669 SITE 1 AC4 4 LYS A 115 ARG A 119 HOH A 702 HOH A 785 SITE 1 AC5 9 HIS A 137 ASN A 278 ARG A 285 ARG A 311 SITE 2 AC5 9 HOH A 532 HOH A 655 HOH A 725 HOH A 792 SITE 3 AC5 9 HOH A 809 SITE 1 AC6 9 GLU A 16 ILE A 133 SER A 134 GLY A 135 SITE 2 AC6 9 HIS A 137 ARG A 215 HOH A 541 HOH A 576 SITE 3 AC6 9 HOH A 810 SITE 1 AC7 6 ASN A 278 LYS A 287 PRO A 296 HOH A 613 SITE 2 AC7 6 HOH A 690 HOH A 798 SITE 1 AC8 3 THR A 21 CYS A 23 ASN A 25 SITE 1 AC9 3 HIS A 60 ASP A 61 LYS A 65 SITE 1 BC1 2 HIS A 82 SER A 83 SITE 1 BC2 5 ARG A 113 GLN A 265 ARG A 266 HOH A 580 SITE 2 BC2 5 HOH A 819 SITE 1 BC3 3 PRO A 402 LYS A 403 HOH A 730 CRYST1 89.849 89.849 151.468 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011130 0.006426 0.000000 0.00000 SCALE2 0.000000 0.012852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006602 0.00000