HEADER CELL INVASION 18-JUL-10 3O02 TITLE THE CRYSTAL STRUCTURE OF THE SALMONELLA TYPE III SECRETION SYSTEM TIP TITLE 2 PROTEIN SIPD IN COMPLEX WITH CHENODEOXYCHOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL INVASION PROTEIN SIPD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SALMONELLA INVASION PROTEIN D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA; SOURCE 3 ORGANISM_TAXID: 90371; SOURCE 4 STRAIN: ENTERICA SEROVAR TYPHIMURIUM; SOURCE 5 GENE: SIPD, SSPD, STM2883; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDZ1 KEYWDS COILED-COIL, BACTERIAL NEEDLE TIP PROTEIN, SIPB, SIPC, PRGI, CELL KEYWDS 2 INVASION EXPDTA X-RAY DIFFRACTION AUTHOR S.CHATTERJEE,D.ZHONG,B.A.NORDHUES,K.P.BATTAILE,S.LOVELL,R.N.DEGUZMAN REVDAT 3 21-FEB-24 3O02 1 REMARK SEQADV LINK REVDAT 2 05-JAN-11 3O02 1 JRNL REVDAT 1 17-NOV-10 3O02 0 JRNL AUTH S.CHATTERJEE,D.ZHONG,B.A.NORDHUES,K.P.BATTAILE,S.LOVELL, JRNL AUTH 2 R.N.DE GUZMAN JRNL TITL THE CRYSTAL STRUCTURES OF THE SALMONELLA TYPE III SECRETION JRNL TITL 2 SYSTEM TIP PROTEIN SIPD IN COMPLEX WITH DEOXYCHOLATE AND JRNL TITL 3 CHENODEOXYCHOLATE. JRNL REF PROTEIN SCI. V. 20 75 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21031487 JRNL DOI 10.1002/PRO.537 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 44253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2354 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2713 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4227 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 318 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.155 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4482 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6137 ; 1.442 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 604 ; 4.685 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;34.694 ;26.869 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 799 ;15.184 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 724 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3359 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2118 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3159 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 291 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.131 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.215 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2923 ; 0.992 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4593 ; 1.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1797 ; 2.639 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1513 ; 3.902 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O02 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060494. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44253 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 37.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 3350, 100MM TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 101.10800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.18500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 101.10800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.18500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 110 REMARK 465 ALA A 111 REMARK 465 PRO A 112 REMARK 465 THR A 113 REMARK 465 SER A 114 REMARK 465 ALA A 115 REMARK 465 LEU A 116 REMARK 465 PHE A 117 REMARK 465 SER A 118 REMARK 465 ALA A 119 REMARK 465 SER A 120 REMARK 465 PRO A 121 REMARK 465 MET A 122 REMARK 465 ALA A 123 REMARK 465 GLN A 124 REMARK 465 PRO A 125 REMARK 465 ARG A 126 REMARK 465 THR A 127 REMARK 465 THR A 128 REMARK 465 ILE A 129 REMARK 465 SER A 130 REMARK 465 ASP A 131 REMARK 465 ALA A 132 REMARK 465 GLU A 133 REMARK 465 GLY A 343 REMARK 465 GLY B 36 REMARK 465 HIS B 37 REMARK 465 MET B 38 REMARK 465 GLU B 39 REMARK 465 HIS B 40 REMARK 465 ARG B 41 REMARK 465 GLY B 42 REMARK 465 THR B 43 REMARK 465 ASP B 44 REMARK 465 ILE B 45 REMARK 465 ILE B 46 REMARK 465 LYS B 92 REMARK 465 SER B 93 REMARK 465 GLY B 94 REMARK 465 SER B 118 REMARK 465 ALA B 119 REMARK 465 SER B 120 REMARK 465 PRO B 121 REMARK 465 MET B 122 REMARK 465 ALA B 123 REMARK 465 GLN B 124 REMARK 465 PRO B 125 REMARK 465 ARG B 126 REMARK 465 THR B 127 REMARK 465 THR B 128 REMARK 465 ILE B 129 REMARK 465 SER B 130 REMARK 465 ASP B 131 REMARK 465 ALA B 132 REMARK 465 GLU B 133 REMARK 465 ILE B 134 REMARK 465 SER B 219 REMARK 465 GLY B 220 REMARK 465 SER B 221 REMARK 465 ALA B 337 REMARK 465 LYS B 338 REMARK 465 SER B 339 REMARK 465 PHE B 340 REMARK 465 LEU B 341 REMARK 465 GLN B 342 REMARK 465 GLY B 343 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 40 60.68 -151.80 REMARK 500 TYR A 149 -69.96 -121.95 REMARK 500 SER A 219 -153.91 -110.95 REMARK 500 SER A 278 8.49 80.47 REMARK 500 PHE B 109 48.97 -94.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 1 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 36 N REMARK 620 2 HIS A 37 ND1 173.7 REMARK 620 3 HIS A 37 N 81.6 93.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JN3 B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NZZ RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT LIGAND REMARK 900 RELATED ID: 3O00 RELATED DB: PDB REMARK 900 SAME PROTEIN WITHOUT LIGAND AND WITH C244S MUTATION REMARK 900 RELATED ID: 3O01 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH DEOXYCHOLATE DBREF 3O02 A 39 343 UNP Q56026 SIPD_SALTY 39 343 DBREF 3O02 B 39 343 UNP Q56026 SIPD_SALTY 39 343 SEQADV 3O02 GLY A 36 UNP Q56026 EXPRESSION TAG SEQADV 3O02 HIS A 37 UNP Q56026 EXPRESSION TAG SEQADV 3O02 MET A 38 UNP Q56026 EXPRESSION TAG SEQADV 3O02 GLY B 36 UNP Q56026 EXPRESSION TAG SEQADV 3O02 HIS B 37 UNP Q56026 EXPRESSION TAG SEQADV 3O02 MET B 38 UNP Q56026 EXPRESSION TAG SEQRES 1 A 308 GLY HIS MET GLU HIS ARG GLY THR ASP ILE ILE SER LEU SEQRES 2 A 308 SER GLN ALA ALA THR LYS ILE HIS GLN ALA GLN GLN THR SEQRES 3 A 308 LEU GLN SER THR PRO PRO ILE SER GLU GLU ASN ASN ASP SEQRES 4 A 308 GLU ARG THR LEU ALA ARG GLN GLN LEU THR SER SER LEU SEQRES 5 A 308 ASN ALA LEU ALA LYS SER GLY VAL SER LEU SER ALA GLU SEQRES 6 A 308 GLN ASN GLU ASN LEU ARG SER ALA PHE SER ALA PRO THR SEQRES 7 A 308 SER ALA LEU PHE SER ALA SER PRO MET ALA GLN PRO ARG SEQRES 8 A 308 THR THR ILE SER ASP ALA GLU ILE TRP ASP MET VAL SER SEQRES 9 A 308 GLN ASN ILE SER ALA ILE GLY ASP SER TYR LEU GLY VAL SEQRES 10 A 308 TYR GLU ASN VAL VAL ALA VAL TYR THR ASP PHE TYR GLN SEQRES 11 A 308 ALA PHE SER ASP ILE LEU SER LYS MET GLY GLY TRP LEU SEQRES 12 A 308 LEU PRO GLY LYS ASP GLY ASN THR VAL LYS LEU ASP VAL SEQRES 13 A 308 THR SER LEU LYS ASN ASP LEU ASN SER LEU VAL ASN LYS SEQRES 14 A 308 TYR ASN GLN ILE ASN SER ASN THR VAL LEU PHE PRO ALA SEQRES 15 A 308 GLN SER GLY SER GLY VAL LYS VAL ALA THR GLU ALA GLU SEQRES 16 A 308 ALA ARG GLN TRP LEU SER GLU LEU ASN LEU PRO ASN SER SEQRES 17 A 308 CYS LEU LYS SER TYR GLY SER GLY TYR VAL VAL THR VAL SEQRES 18 A 308 ASP LEU THR PRO LEU GLN LYS MET VAL GLN ASP ILE ASP SEQRES 19 A 308 GLY LEU GLY ALA PRO GLY LYS ASP SER LYS LEU GLU MET SEQRES 20 A 308 ASP ASN ALA LYS TYR GLN ALA TRP GLN SER GLY PHE LYS SEQRES 21 A 308 ALA GLN GLU GLU ASN MET LYS THR THR LEU GLN THR LEU SEQRES 22 A 308 THR GLN LYS TYR SER ASN ALA ASN SER LEU TYR ASP ASN SEQRES 23 A 308 LEU VAL LYS VAL LEU SER SER THR ILE SER SER SER LEU SEQRES 24 A 308 GLU THR ALA LYS SER PHE LEU GLN GLY SEQRES 1 B 308 GLY HIS MET GLU HIS ARG GLY THR ASP ILE ILE SER LEU SEQRES 2 B 308 SER GLN ALA ALA THR LYS ILE HIS GLN ALA GLN GLN THR SEQRES 3 B 308 LEU GLN SER THR PRO PRO ILE SER GLU GLU ASN ASN ASP SEQRES 4 B 308 GLU ARG THR LEU ALA ARG GLN GLN LEU THR SER SER LEU SEQRES 5 B 308 ASN ALA LEU ALA LYS SER GLY VAL SER LEU SER ALA GLU SEQRES 6 B 308 GLN ASN GLU ASN LEU ARG SER ALA PHE SER ALA PRO THR SEQRES 7 B 308 SER ALA LEU PHE SER ALA SER PRO MET ALA GLN PRO ARG SEQRES 8 B 308 THR THR ILE SER ASP ALA GLU ILE TRP ASP MET VAL SER SEQRES 9 B 308 GLN ASN ILE SER ALA ILE GLY ASP SER TYR LEU GLY VAL SEQRES 10 B 308 TYR GLU ASN VAL VAL ALA VAL TYR THR ASP PHE TYR GLN SEQRES 11 B 308 ALA PHE SER ASP ILE LEU SER LYS MET GLY GLY TRP LEU SEQRES 12 B 308 LEU PRO GLY LYS ASP GLY ASN THR VAL LYS LEU ASP VAL SEQRES 13 B 308 THR SER LEU LYS ASN ASP LEU ASN SER LEU VAL ASN LYS SEQRES 14 B 308 TYR ASN GLN ILE ASN SER ASN THR VAL LEU PHE PRO ALA SEQRES 15 B 308 GLN SER GLY SER GLY VAL LYS VAL ALA THR GLU ALA GLU SEQRES 16 B 308 ALA ARG GLN TRP LEU SER GLU LEU ASN LEU PRO ASN SER SEQRES 17 B 308 CYS LEU LYS SER TYR GLY SER GLY TYR VAL VAL THR VAL SEQRES 18 B 308 ASP LEU THR PRO LEU GLN LYS MET VAL GLN ASP ILE ASP SEQRES 19 B 308 GLY LEU GLY ALA PRO GLY LYS ASP SER LYS LEU GLU MET SEQRES 20 B 308 ASP ASN ALA LYS TYR GLN ALA TRP GLN SER GLY PHE LYS SEQRES 21 B 308 ALA GLN GLU GLU ASN MET LYS THR THR LEU GLN THR LEU SEQRES 22 B 308 THR GLN LYS TYR SER ASN ALA ASN SER LEU TYR ASP ASN SEQRES 23 B 308 LEU VAL LYS VAL LEU SER SER THR ILE SER SER SER LEU SEQRES 24 B 308 GLU THR ALA LYS SER PHE LEU GLN GLY HET NI A 1 1 HET JN3 B 1 28 HETNAM NI NICKEL (II) ION HETNAM JN3 CHENODEOXYCHOLIC ACID HETSYN JN3 (3ALPHA,5ALPHA,7BETA,8ALPHA,17ALPHA)-3,7- HETSYN 2 JN3 DIHYDROXYCHOLAN-24-OIC ACID FORMUL 3 NI NI 2+ FORMUL 4 JN3 C24 H40 O4 FORMUL 5 HOH *318(H2 O) HELIX 1 1 HIS A 40 THR A 65 1 26 HELIX 2 2 SER A 69 LYS A 92 1 24 HELIX 3 3 SER A 98 PHE A 109 1 12 HELIX 4 4 ILE A 134 TYR A 149 1 16 HELIX 5 5 TYR A 149 SER A 172 1 24 HELIX 6 6 LYS A 173 GLY A 176 5 4 HELIX 7 7 ASP A 190 ASN A 206 1 17 HELIX 8 8 THR A 227 ASN A 239 1 13 HELIX 9 9 PRO A 241 SER A 243 5 3 HELIX 10 10 LEU A 258 LEU A 271 1 14 HELIX 11 11 ASN A 284 SER A 339 1 56 HELIX 12 12 SER B 47 THR B 65 1 19 HELIX 13 13 SER B 69 ALA B 91 1 23 HELIX 14 14 SER B 98 PHE B 109 1 12 HELIX 15 15 TRP B 135 TYR B 149 1 15 HELIX 16 16 TYR B 149 SER B 172 1 24 HELIX 17 17 LYS B 173 GLY B 176 5 4 HELIX 18 18 ASP B 190 ASN B 206 1 17 HELIX 19 19 THR B 227 ASN B 239 1 13 HELIX 20 20 PRO B 241 SER B 243 5 3 HELIX 21 21 LEU B 258 LEU B 271 1 14 HELIX 22 22 ASN B 284 THR B 336 1 53 SHEET 1 A 3 LEU A 178 PRO A 180 0 SHEET 2 A 3 THR A 186 LEU A 189 -1 O LYS A 188 N LEU A 179 SHEET 3 A 3 LEU A 280 ASP A 283 -1 O MET A 282 N VAL A 187 SHEET 1 B 3 VAL A 213 PHE A 215 0 SHEET 2 B 3 GLY A 251 THR A 255 -1 O VAL A 254 N LEU A 214 SHEET 3 B 3 LEU A 245 TYR A 248 -1 N TYR A 248 O GLY A 251 SHEET 1 C 3 LEU B 178 PRO B 180 0 SHEET 2 C 3 THR B 186 LEU B 189 -1 O LYS B 188 N LEU B 179 SHEET 3 C 3 LEU B 280 ASP B 283 -1 O LEU B 280 N LEU B 189 SHEET 1 D 3 VAL B 213 PHE B 215 0 SHEET 2 D 3 GLY B 251 THR B 255 -1 O VAL B 254 N PHE B 215 SHEET 3 D 3 LEU B 245 TYR B 248 -1 N LYS B 246 O VAL B 253 LINK NI NI A 1 N GLY A 36 1555 1555 1.79 LINK NI NI A 1 ND1 HIS A 37 1555 1555 1.87 LINK NI NI A 1 N HIS A 37 1555 1555 2.15 CISPEP 1 PHE A 215 PRO A 216 0 -13.00 CISPEP 2 PHE B 215 PRO B 216 0 -8.11 SITE 1 AC1 4 GLY A 36 HIS A 37 MET A 38 HIS A 40 SITE 1 AC2 10 SER A 221 GLY A 222 LYS A 338 PHE A 340 SITE 2 AC2 10 ASN B 104 ALA B 108 LEU B 318 ASN B 321 SITE 3 AC2 10 VAL B 325 HOH B 436 CRYST1 202.216 52.370 57.316 90.00 90.20 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004945 0.000000 0.000017 0.00000 SCALE2 0.000000 0.019095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017447 0.00000