HEADER OXIDOREDUCTASE 18-JUL-10 3O03 TITLE QUATERNARY COMPLEX STRUCTURE OF GLUCONATE 5-DEHYDROGENASE FROM TITLE 2 STREPTOCOCCUS SUIS TYPE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHYDROGENASE WITH DIFFERENT SPECIFICITIES; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.69; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SUIS; SOURCE 3 ORGANISM_TAXID: 391295; SOURCE 4 STRAIN: 05ZYH33; SOURCE 5 GENE: IDNO, SSU05_1225; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.PENG,F.GAO,Q.ZHANG,Y.LIU,G.F.GAO REVDAT 4 01-NOV-23 3O03 1 HETSYN REVDAT 3 29-JUL-20 3O03 1 COMPND REMARK SEQADV HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 12-NOV-14 3O03 1 KEYWDS REVDAT 1 15-DEC-10 3O03 0 SPRSDE 15-DEC-10 3O03 3CXT JRNL AUTH Q.ZHANG,H.PENG,F.GAO,Y.LIU,H.CHENG,J.THOMPSON,G.F.GAO JRNL TITL STRUCTURAL INSIGHT INTO THE CATALYTIC MECHANISM OF GLUCONATE JRNL TITL 2 5-DEHYDROGENASE FROM STREPTOCOCCUS SUIS: CRYSTAL STRUCTURES JRNL TITL 3 OF THE SUBSTRATE-FREE AND QUATERNARY COMPLEX ENZYMES. JRNL REF PROTEIN SCI. V. 18 294 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19177572 JRNL DOI 10.1002/PRO.32 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20183 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1072 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1427 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1884 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.67000 REMARK 3 B22 (A**2) : 1.08000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.329 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1980 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2688 ; 1.637 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 6.241 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 76 ;37.800 ;25.263 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 316 ;13.732 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;15.198 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1461 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 983 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1375 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 156 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 104 ; 0.202 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.188 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1303 ; 0.918 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1993 ; 1.317 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 795 ; 2.391 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 695 ; 3.465 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24607 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 59.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 25.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.06800 REMARK 200 R SYM FOR SHELL (I) : 0.15000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3CXR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.62200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.63600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 49.35000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.62200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.63600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.35000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.62200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.63600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.35000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.62200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.63600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.27200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 75.27200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 75.27200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 202 REMARK 465 PRO A 203 REMARK 465 LEU A 204 REMARK 465 ARG A 205 REMARK 465 GLU A 206 REMARK 465 LEU A 207 REMARK 465 GLN A 208 REMARK 465 LYS A 209 REMARK 465 ASP A 210 REMARK 465 GLY A 211 REMARK 465 SER A 212 REMARK 465 ARG A 213 REMARK 465 GLU A 270 REMARK 465 ALA A 271 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 200 CG CD OE1 NE2 REMARK 470 THR A 201 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 349 O HOH A 432 2.12 REMARK 500 O4 GCO A 274 O HOH A 479 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 22 36.21 -97.12 REMARK 500 VAL A 89 -54.40 -126.62 REMARK 500 LEU A 123 -56.82 -125.39 REMARK 500 CYS A 149 -140.52 -92.52 REMARK 500 THR A 159 -16.82 81.14 REMARK 500 GLN A 200 40.46 -72.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 272 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 150 OG REMARK 620 2 PRO A 193 O 122.5 REMARK 620 3 HOH A 479 O 110.7 123.6 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3CXR RELATED DB: PDB DBREF 3O03 A 1 271 UNP A4VVQ2 A4VVQ2_STRSY 1 271 SEQADV 3O03 MET A -19 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 GLY A -18 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 SER A -17 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 SER A -16 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 HIS A -15 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 HIS A -14 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 HIS A -13 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 HIS A -12 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 HIS A -11 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 HIS A -10 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 SER A -9 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 SER A -8 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 GLY A -7 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 LEU A -6 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 VAL A -5 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 PRO A -4 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 ARG A -3 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 GLY A -2 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 SER A -1 UNP A4VVQ2 EXPRESSION TAG SEQADV 3O03 HIS A 0 UNP A4VVQ2 EXPRESSION TAG SEQRES 1 A 291 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 291 LEU VAL PRO ARG GLY SER HIS MET ASN GLN GLN PHE SER SEQRES 3 A 291 LEU ASP GLN PHE SER LEU LYS GLY LYS ILE ALA LEU VAL SEQRES 4 A 291 THR GLY ALA SER TYR GLY ILE GLY PHE ALA ILE ALA SER SEQRES 5 A 291 ALA TYR ALA LYS ALA GLY ALA THR ILE VAL PHE ASN ASP SEQRES 6 A 291 ILE ASN GLN GLU LEU VAL ASP ARG GLY MET ALA ALA TYR SEQRES 7 A 291 LYS ALA ALA GLY ILE ASN ALA HIS GLY TYR VAL CYS ASP SEQRES 8 A 291 VAL THR ASP GLU ASP GLY ILE GLN ALA MET VAL ALA GLN SEQRES 9 A 291 ILE GLU SER GLU VAL GLY ILE ILE ASP ILE LEU VAL ASN SEQRES 10 A 291 ASN ALA GLY ILE ILE ARG ARG VAL PRO MET ILE GLU MET SEQRES 11 A 291 THR ALA ALA GLN PHE ARG GLN VAL ILE ASP ILE ASP LEU SEQRES 12 A 291 ASN ALA PRO PHE ILE VAL SER LYS ALA VAL ILE PRO SER SEQRES 13 A 291 MET ILE LYS LYS GLY HIS GLY LYS ILE ILE ASN ILE CYS SEQRES 14 A 291 SER MET MET SER GLU LEU GLY ARG GLU THR VAL SER ALA SEQRES 15 A 291 TYR ALA ALA ALA LYS GLY GLY LEU LYS MET LEU THR LYS SEQRES 16 A 291 ASN ILE ALA SER GLU TYR GLY GLU ALA ASN ILE GLN CYS SEQRES 17 A 291 ASN GLY ILE GLY PRO GLY TYR ILE ALA THR PRO GLN THR SEQRES 18 A 291 ALA PRO LEU ARG GLU LEU GLN LYS ASP GLY SER ARG HIS SEQRES 19 A 291 PRO PHE ASP GLN PHE ILE ILE ALA LYS THR PRO ALA ALA SEQRES 20 A 291 ARG TRP GLY GLU ALA GLU ASP LEU MET GLY PRO ALA VAL SEQRES 21 A 291 PHE LEU ALA SER ASP ALA SER ASN PHE VAL ASN GLY HIS SEQRES 22 A 291 ILE LEU TYR VAL ASP GLY GLY ILE LEU ALA TYR ILE GLY SEQRES 23 A 291 LYS GLN PRO GLU ALA HET CA A 272 1 HET NAP A 273 48 HET GCO A 274 13 HETNAM CA CALCIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GCO D-GLUCONIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GCO GLUCONIC ACID FORMUL 2 CA CA 2+ FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 GCO C6 H12 O7 FORMUL 5 HOH *208(H2 O) HELIX 1 1 SER A 6 SER A 11 5 6 HELIX 2 2 TYR A 24 ALA A 37 1 14 HELIX 3 3 ASN A 47 ALA A 61 1 15 HELIX 4 4 ASP A 74 VAL A 89 1 16 HELIX 5 5 PRO A 106 MET A 110 5 5 HELIX 6 6 THR A 111 LEU A 123 1 13 HELIX 7 7 LEU A 123 GLY A 141 1 19 HELIX 8 8 SER A 150 GLU A 154 5 5 HELIX 9 9 VAL A 160 GLY A 182 1 23 HELIX 10 10 HIS A 214 THR A 224 1 11 HELIX 11 11 GLU A 231 SER A 244 1 14 HELIX 12 12 ASP A 245 ASN A 248 5 4 HELIX 13 13 GLY A 260 TYR A 264 5 5 SHEET 1 A 7 HIS A 66 VAL A 69 0 SHEET 2 A 7 THR A 40 ASP A 45 1 N PHE A 43 O HIS A 66 SHEET 3 A 7 ILE A 16 THR A 20 1 N ALA A 17 O THR A 40 SHEET 4 A 7 ILE A 94 ASN A 97 1 O VAL A 96 N LEU A 18 SHEET 5 A 7 GLY A 143 ILE A 148 1 O ILE A 146 N LEU A 95 SHEET 6 A 7 ILE A 186 PRO A 193 1 O ASN A 189 N ASN A 147 SHEET 7 A 7 ILE A 254 VAL A 257 1 O LEU A 255 N GLY A 190 LINK OG SER A 150 CA CA A 272 1555 1555 3.01 LINK O PRO A 193 CA CA A 272 1555 1555 2.84 LINK CA CA A 272 O HOH A 479 1555 1555 2.52 CRYST1 71.244 75.272 98.700 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014036 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010132 0.00000