HEADER BIOSYNTHETIC PROTEIN 19-JUL-10 3O06 TITLE CRYSTAL STRUCTURE OF YEAST PYRIDOXAL 5-PHOSPHATE SYNTHASE SNZ1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXINE BIOSYNTHESIS PROTEIN SNZ1; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 15-297; COMPND 5 SYNONYM: PDX1 HOMOLOG 1, P35; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SNZ1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS (BETA/ALPHA)8-BARREL, PYRIDOXAL 5-PHOSPHATE SYNTHASE, PLP SNO1 G3P KEYWDS 2 R5P, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.B.TENG,X.ZHANG,C.Z.ZHOU,H.X.HU REVDAT 3 01-NOV-23 3O06 1 SEQADV REVDAT 2 26-MAR-14 3O06 1 JRNL VERSN REVDAT 1 24-NOV-10 3O06 0 JRNL AUTH X.ZHANG,Y.B.TENG,J.P.LIU,Y.X.HE,K.ZHOU,Y.CHEN,C.Z.ZHOU JRNL TITL STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF THE JRNL TITL 2 YEAST PYRIDOXAL 5-PHOSPHATE SYNTHASE SNZ1 JRNL REF BIOCHEM.J. V. 432 445 2010 JRNL REFN ISSN 0264-6021 JRNL PMID 20919991 JRNL DOI 10.1042/BJ20101241 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 110.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 41124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2175 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2936 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.2110 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.2850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5799 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.104 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.204 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.896 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5670 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7640 ; 1.844 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 741 ; 6.689 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;36.269 ;25.673 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1067 ;16.838 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;18.868 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 914 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4075 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3707 ; 1.288 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5973 ; 2.317 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1963 ; 3.465 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1667 ; 5.800 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 46 REMARK 3 RESIDUE RANGE : A 56 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4970 33.7530 18.4250 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0834 REMARK 3 T33: 0.0227 T12: -0.0285 REMARK 3 T13: 0.0104 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 0.0583 L22: 0.5940 REMARK 3 L33: 1.1890 L12: -0.0816 REMARK 3 L13: 0.2330 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: 0.0162 S13: -0.0164 REMARK 3 S21: 0.0531 S22: 0.0339 S23: 0.0651 REMARK 3 S31: -0.0813 S32: 0.0576 S33: -0.0125 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 46 REMARK 3 RESIDUE RANGE : B 56 B 270 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4940 33.0410 -19.7150 REMARK 3 T TENSOR REMARK 3 T11: 0.0520 T22: 0.0372 REMARK 3 T33: 0.0138 T12: -0.0223 REMARK 3 T13: -0.0053 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.2839 L22: 0.7372 REMARK 3 L33: 1.7225 L12: 0.0790 REMARK 3 L13: 0.0427 L23: 0.7752 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.0577 S13: -0.0201 REMARK 3 S21: -0.1355 S22: 0.0574 S23: 0.0263 REMARK 3 S31: -0.2434 S32: 0.1173 S33: -0.0185 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 17 C 46 REMARK 3 RESIDUE RANGE : C 56 C 270 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0190 54.4750 -40.4280 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0289 REMARK 3 T33: 0.0411 T12: 0.0028 REMARK 3 T13: 0.0061 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.2012 L22: 2.6492 REMARK 3 L33: 0.5805 L12: 0.1452 REMARK 3 L13: 0.1083 L23: 0.5439 REMARK 3 S TENSOR REMARK 3 S11: -0.0292 S12: -0.0254 S13: 0.0350 REMARK 3 S21: 0.2138 S22: 0.0351 S23: 0.1723 REMARK 3 S31: 0.0472 S32: -0.0424 S33: -0.0059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43496 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 110.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1ZNN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 400, 0.1M MEGNESIUM CLORIDE, REMARK 280 0.1M HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.18800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.19650 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.18800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.19650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 GLY A 14 REMARK 465 MET A 15 REMARK 465 LEU A 274 REMARK 465 MET A 275 REMARK 465 GLY A 276 REMARK 465 GLY A 277 REMARK 465 VAL A 278 REMARK 465 SER A 279 REMARK 465 ILE A 280 REMARK 465 GLU A 281 REMARK 465 SER A 282 REMARK 465 ILE A 283 REMARK 465 SER A 284 REMARK 465 HIS A 285 REMARK 465 ALA A 286 REMARK 465 SER A 287 REMARK 465 ASN A 288 REMARK 465 GLY A 289 REMARK 465 VAL A 290 REMARK 465 ARG A 291 REMARK 465 LEU A 292 REMARK 465 SER A 293 REMARK 465 GLU A 294 REMARK 465 ILE A 295 REMARK 465 GLY A 296 REMARK 465 TRP A 297 REMARK 465 MET B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 HIS B 11 REMARK 465 HIS B 12 REMARK 465 HIS B 13 REMARK 465 GLY B 14 REMARK 465 MET B 15 REMARK 465 LEU B 274 REMARK 465 MET B 275 REMARK 465 GLY B 276 REMARK 465 GLY B 277 REMARK 465 VAL B 278 REMARK 465 SER B 279 REMARK 465 ILE B 280 REMARK 465 GLU B 281 REMARK 465 SER B 282 REMARK 465 ILE B 283 REMARK 465 SER B 284 REMARK 465 HIS B 285 REMARK 465 ALA B 286 REMARK 465 SER B 287 REMARK 465 ASN B 288 REMARK 465 GLY B 289 REMARK 465 VAL B 290 REMARK 465 ARG B 291 REMARK 465 LEU B 292 REMARK 465 SER B 293 REMARK 465 GLU B 294 REMARK 465 ILE B 295 REMARK 465 GLY B 296 REMARK 465 TRP B 297 REMARK 465 MET C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 HIS C 10 REMARK 465 HIS C 11 REMARK 465 HIS C 12 REMARK 465 HIS C 13 REMARK 465 GLY C 14 REMARK 465 MET C 15 REMARK 465 LEU C 274 REMARK 465 MET C 275 REMARK 465 GLY C 276 REMARK 465 GLY C 277 REMARK 465 VAL C 278 REMARK 465 SER C 279 REMARK 465 ILE C 280 REMARK 465 GLU C 281 REMARK 465 SER C 282 REMARK 465 ILE C 283 REMARK 465 SER C 284 REMARK 465 HIS C 285 REMARK 465 ALA C 286 REMARK 465 SER C 287 REMARK 465 ASN C 288 REMARK 465 GLY C 289 REMARK 465 VAL C 290 REMARK 465 ARG C 291 REMARK 465 LEU C 292 REMARK 465 SER C 293 REMARK 465 GLU C 294 REMARK 465 ILE C 295 REMARK 465 GLY C 296 REMARK 465 TRP C 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 48 C - N - CD ANGL. DEV. = -21.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 17 -110.85 -105.17 REMARK 500 GLU A 96 31.24 72.59 REMARK 500 HIS A 257 39.90 -98.24 REMARK 500 SER B 46 -166.18 -104.59 REMARK 500 PRO B 48 -78.27 3.50 REMARK 500 ALA B 49 -89.36 5.10 REMARK 500 ASP B 50 -24.49 -34.47 REMARK 500 MET B 60 142.43 -39.27 REMARK 500 GLU B 96 34.15 71.42 REMARK 500 HIS B 257 42.37 -107.86 REMARK 500 LYS C 17 133.16 -36.33 REMARK 500 SER C 46 126.92 -171.96 REMARK 500 PRO C 48 34.29 -73.46 REMARK 500 HIS C 257 48.49 -99.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 47 PRO B 48 -144.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE B 47 12.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3FEM RELATED DB: PDB REMARK 900 THE SAME PROTEIN REMARK 900 RELATED ID: 2ZBT RELATED DB: PDB REMARK 900 RELATED ID: 1ZNN RELATED DB: PDB REMARK 900 RELATED ID: 3O05 RELATED DB: PDB REMARK 900 RELATED ID: 3O07 RELATED DB: PDB DBREF 3O06 A 15 297 UNP Q03148 SNZ1_YEAST 15 297 DBREF 3O06 B 15 297 UNP Q03148 SNZ1_YEAST 15 297 DBREF 3O06 C 15 297 UNP Q03148 SNZ1_YEAST 15 297 SEQADV 3O06 MET A 7 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS A 8 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS A 9 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS A 10 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS A 11 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS A 12 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS A 13 UNP Q03148 EXPRESSION TAG SEQADV 3O06 GLY A 14 UNP Q03148 EXPRESSION TAG SEQADV 3O06 MET B 7 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS B 8 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS B 9 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS B 10 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS B 11 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS B 12 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS B 13 UNP Q03148 EXPRESSION TAG SEQADV 3O06 GLY B 14 UNP Q03148 EXPRESSION TAG SEQADV 3O06 MET C 7 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS C 8 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS C 9 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS C 10 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS C 11 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS C 12 UNP Q03148 EXPRESSION TAG SEQADV 3O06 HIS C 13 UNP Q03148 EXPRESSION TAG SEQADV 3O06 GLY C 14 UNP Q03148 EXPRESSION TAG SEQRES 1 A 291 MET HIS HIS HIS HIS HIS HIS GLY MET LEU LYS GLY GLY SEQRES 2 A 291 VAL ILE MET ASP VAL VAL THR PRO GLU GLN ALA LYS ILE SEQRES 3 A 291 ALA GLU LYS SER GLY ALA CYS ALA VAL MET ALA LEU GLU SEQRES 4 A 291 SER ILE PRO ALA ASP MET ARG LYS SER GLY LYS VAL CYS SEQRES 5 A 291 ARG MET SER ASP PRO LYS MET ILE LYS ASP ILE MET ASN SEQRES 6 A 291 SER VAL SER ILE PRO VAL MET ALA LYS VAL ARG ILE GLY SEQRES 7 A 291 HIS PHE VAL GLU ALA GLN ILE ILE GLU ALA LEU GLU VAL SEQRES 8 A 291 ASP TYR ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 9 A 291 TRP THR HIS HIS ILE GLU LYS ASP LYS PHE LYS VAL PRO SEQRES 10 A 291 PHE VAL CYS GLY ALA LYS ASP LEU GLY GLU ALA LEU ARG SEQRES 11 A 291 ARG ILE ASN GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 12 A 291 GLU ALA GLY THR GLY ASP VAL SER GLU ALA VAL LYS HIS SEQRES 13 A 291 ILE ARG ARG ILE THR GLU GLU ILE LYS ALA CYS GLN GLN SEQRES 14 A 291 LEU LYS SER GLU ASP ASP ILE ALA LYS VAL ALA GLU GLU SEQRES 15 A 291 MET ARG VAL PRO VAL SER LEU LEU LYS ASP VAL LEU GLU SEQRES 16 A 291 LYS GLY LYS LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY SEQRES 17 A 291 VAL ALA THR PRO ALA ASP ALA ALA LEU LEU MET GLN LEU SEQRES 18 A 291 GLY CYS ASP GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SEQRES 19 A 291 SER SER ASN PRO VAL ARG LEU ALA THR ALA VAL VAL GLU SEQRES 20 A 291 ALA THR THR HIS PHE ASP ASN PRO SER LYS LEU LEU GLU SEQRES 21 A 291 VAL SER SER ASP LEU GLY GLU LEU MET GLY GLY VAL SER SEQRES 22 A 291 ILE GLU SER ILE SER HIS ALA SER ASN GLY VAL ARG LEU SEQRES 23 A 291 SER GLU ILE GLY TRP SEQRES 1 B 291 MET HIS HIS HIS HIS HIS HIS GLY MET LEU LYS GLY GLY SEQRES 2 B 291 VAL ILE MET ASP VAL VAL THR PRO GLU GLN ALA LYS ILE SEQRES 3 B 291 ALA GLU LYS SER GLY ALA CYS ALA VAL MET ALA LEU GLU SEQRES 4 B 291 SER ILE PRO ALA ASP MET ARG LYS SER GLY LYS VAL CYS SEQRES 5 B 291 ARG MET SER ASP PRO LYS MET ILE LYS ASP ILE MET ASN SEQRES 6 B 291 SER VAL SER ILE PRO VAL MET ALA LYS VAL ARG ILE GLY SEQRES 7 B 291 HIS PHE VAL GLU ALA GLN ILE ILE GLU ALA LEU GLU VAL SEQRES 8 B 291 ASP TYR ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 9 B 291 TRP THR HIS HIS ILE GLU LYS ASP LYS PHE LYS VAL PRO SEQRES 10 B 291 PHE VAL CYS GLY ALA LYS ASP LEU GLY GLU ALA LEU ARG SEQRES 11 B 291 ARG ILE ASN GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 12 B 291 GLU ALA GLY THR GLY ASP VAL SER GLU ALA VAL LYS HIS SEQRES 13 B 291 ILE ARG ARG ILE THR GLU GLU ILE LYS ALA CYS GLN GLN SEQRES 14 B 291 LEU LYS SER GLU ASP ASP ILE ALA LYS VAL ALA GLU GLU SEQRES 15 B 291 MET ARG VAL PRO VAL SER LEU LEU LYS ASP VAL LEU GLU SEQRES 16 B 291 LYS GLY LYS LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY SEQRES 17 B 291 VAL ALA THR PRO ALA ASP ALA ALA LEU LEU MET GLN LEU SEQRES 18 B 291 GLY CYS ASP GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SEQRES 19 B 291 SER SER ASN PRO VAL ARG LEU ALA THR ALA VAL VAL GLU SEQRES 20 B 291 ALA THR THR HIS PHE ASP ASN PRO SER LYS LEU LEU GLU SEQRES 21 B 291 VAL SER SER ASP LEU GLY GLU LEU MET GLY GLY VAL SER SEQRES 22 B 291 ILE GLU SER ILE SER HIS ALA SER ASN GLY VAL ARG LEU SEQRES 23 B 291 SER GLU ILE GLY TRP SEQRES 1 C 291 MET HIS HIS HIS HIS HIS HIS GLY MET LEU LYS GLY GLY SEQRES 2 C 291 VAL ILE MET ASP VAL VAL THR PRO GLU GLN ALA LYS ILE SEQRES 3 C 291 ALA GLU LYS SER GLY ALA CYS ALA VAL MET ALA LEU GLU SEQRES 4 C 291 SER ILE PRO ALA ASP MET ARG LYS SER GLY LYS VAL CYS SEQRES 5 C 291 ARG MET SER ASP PRO LYS MET ILE LYS ASP ILE MET ASN SEQRES 6 C 291 SER VAL SER ILE PRO VAL MET ALA LYS VAL ARG ILE GLY SEQRES 7 C 291 HIS PHE VAL GLU ALA GLN ILE ILE GLU ALA LEU GLU VAL SEQRES 8 C 291 ASP TYR ILE ASP GLU SER GLU VAL LEU THR PRO ALA ASP SEQRES 9 C 291 TRP THR HIS HIS ILE GLU LYS ASP LYS PHE LYS VAL PRO SEQRES 10 C 291 PHE VAL CYS GLY ALA LYS ASP LEU GLY GLU ALA LEU ARG SEQRES 11 C 291 ARG ILE ASN GLU GLY ALA ALA MET ILE ARG THR LYS GLY SEQRES 12 C 291 GLU ALA GLY THR GLY ASP VAL SER GLU ALA VAL LYS HIS SEQRES 13 C 291 ILE ARG ARG ILE THR GLU GLU ILE LYS ALA CYS GLN GLN SEQRES 14 C 291 LEU LYS SER GLU ASP ASP ILE ALA LYS VAL ALA GLU GLU SEQRES 15 C 291 MET ARG VAL PRO VAL SER LEU LEU LYS ASP VAL LEU GLU SEQRES 16 C 291 LYS GLY LYS LEU PRO VAL VAL ASN PHE ALA ALA GLY GLY SEQRES 17 C 291 VAL ALA THR PRO ALA ASP ALA ALA LEU LEU MET GLN LEU SEQRES 18 C 291 GLY CYS ASP GLY VAL PHE VAL GLY SER GLY ILE PHE LYS SEQRES 19 C 291 SER SER ASN PRO VAL ARG LEU ALA THR ALA VAL VAL GLU SEQRES 20 C 291 ALA THR THR HIS PHE ASP ASN PRO SER LYS LEU LEU GLU SEQRES 21 C 291 VAL SER SER ASP LEU GLY GLU LEU MET GLY GLY VAL SER SEQRES 22 C 291 ILE GLU SER ILE SER HIS ALA SER ASN GLY VAL ARG LEU SEQRES 23 C 291 SER GLU ILE GLY TRP FORMUL 4 HOH *76(H2 O) HELIX 1 1 THR A 26 SER A 36 1 11 HELIX 2 2 ILE A 47 GLY A 55 1 9 HELIX 3 3 ASP A 62 ASN A 71 1 10 HELIX 4 4 HIS A 85 GLU A 96 1 12 HELIX 5 5 GLU A 116 PHE A 120 5 5 HELIX 6 6 ASP A 130 GLU A 140 1 11 HELIX 7 7 VAL A 156 GLN A 174 1 19 HELIX 8 8 SER A 178 ARG A 190 1 13 HELIX 9 9 PRO A 192 GLY A 203 1 12 HELIX 10 10 THR A 217 LEU A 227 1 11 HELIX 11 11 SER A 236 SER A 241 1 6 HELIX 12 12 ASN A 243 HIS A 257 1 15 HELIX 13 13 ASN A 260 SER A 269 1 10 HELIX 14 14 THR B 26 GLY B 37 1 12 HELIX 15 15 ILE B 47 ARG B 52 5 6 HELIX 16 16 ASP B 62 ASN B 71 1 10 HELIX 17 17 HIS B 85 LEU B 95 1 11 HELIX 18 18 GLU B 116 PHE B 120 5 5 HELIX 19 19 ASP B 130 GLU B 140 1 11 HELIX 20 20 VAL B 156 GLN B 174 1 19 HELIX 21 21 SER B 178 ARG B 190 1 13 HELIX 22 22 PRO B 192 GLY B 203 1 12 HELIX 23 23 THR B 217 LEU B 227 1 11 HELIX 24 24 SER B 236 SER B 241 1 6 HELIX 25 25 ASN B 243 HIS B 257 1 15 HELIX 26 26 ASN B 260 SER B 269 1 10 HELIX 27 27 THR C 26 SER C 36 1 11 HELIX 28 28 ASP C 62 ASN C 71 1 10 HELIX 29 29 HIS C 85 LEU C 95 1 11 HELIX 30 30 GLU C 116 PHE C 120 5 5 HELIX 31 31 ASP C 130 GLU C 140 1 11 HELIX 32 32 VAL C 156 GLN C 175 1 20 HELIX 33 33 SER C 178 ARG C 190 1 13 HELIX 34 34 PRO C 192 GLY C 203 1 12 HELIX 35 35 THR C 217 LEU C 227 1 11 HELIX 36 36 GLY C 235 SER C 241 5 7 HELIX 37 37 ASN C 243 HIS C 257 1 15 HELIX 38 38 ASN C 260 SER C 269 1 10 SHEET 1 A 9 VAL A 20 VAL A 24 0 SHEET 2 A 9 ALA A 40 ALA A 43 1 O MET A 42 N MET A 22 SHEET 3 A 9 VAL A 77 VAL A 81 1 O MET A 78 N VAL A 41 SHEET 4 A 9 TYR A 99 GLU A 102 1 O ASP A 101 N ALA A 79 SHEET 5 A 9 PHE A 124 ALA A 128 1 O VAL A 125 N ILE A 100 SHEET 6 A 9 MET A 144 THR A 147 1 O ARG A 146 N CYS A 126 SHEET 7 A 9 ASN A 209 ALA A 211 1 O PHE A 210 N THR A 147 SHEET 8 A 9 GLY A 231 VAL A 234 1 O PHE A 233 N ALA A 211 SHEET 9 A 9 VAL A 20 VAL A 24 1 N ILE A 21 O VAL A 234 SHEET 1 B 9 GLY B 19 VAL B 24 0 SHEET 2 B 9 ALA B 40 ALA B 43 1 O MET B 42 N MET B 22 SHEET 3 B 9 VAL B 77 ARG B 82 1 O MET B 78 N VAL B 41 SHEET 4 B 9 TYR B 99 SER B 103 1 O ASP B 101 N ALA B 79 SHEET 5 B 9 PHE B 124 ALA B 128 1 O VAL B 125 N ILE B 100 SHEET 6 B 9 MET B 144 THR B 147 1 O MET B 144 N CYS B 126 SHEET 7 B 9 ASN B 209 ALA B 211 1 O PHE B 210 N ILE B 145 SHEET 8 B 9 GLY B 231 VAL B 234 1 O PHE B 233 N ALA B 211 SHEET 9 B 9 GLY B 19 VAL B 24 1 N ILE B 21 O VAL B 234 SHEET 1 C 8 ASN C 209 PHE C 210 0 SHEET 2 C 8 MET C 144 THR C 147 1 N ILE C 145 O PHE C 210 SHEET 3 C 8 PHE C 124 ALA C 128 1 N CYS C 126 O ARG C 146 SHEET 4 C 8 TYR C 99 SER C 103 1 N ILE C 100 O VAL C 125 SHEET 5 C 8 VAL C 77 ARG C 82 1 N ALA C 79 O ASP C 101 SHEET 6 C 8 ALA C 40 ALA C 43 1 N VAL C 41 O MET C 78 SHEET 7 C 8 GLY C 19 VAL C 24 1 N VAL C 24 O MET C 42 SHEET 8 C 8 GLY C 231 VAL C 234 1 O VAL C 232 N GLY C 19 CRYST1 59.313 110.376 156.393 90.00 90.00 90.00 P 2 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009060 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006394 0.00000