HEADER HYDROLASE/HYDROLASE INHIBITOR 19-JUL-10 3O0J TITLE PDE4B IN COMPLEX WITH LIGAND AN2898 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DPDE4, PDE32; COMPND 5 EC: 3.1.4.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEX HTA KEYWDS PHOSPHODIESTERASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.R.K.ALLEY,Y.ZHOU REVDAT 5 21-FEB-24 3O0J 1 REMARK LINK REVDAT 4 23-JAN-13 3O0J 1 JRNL REVDAT 3 12-DEC-12 3O0J 1 JRNL REVDAT 2 30-NOV-11 3O0J 1 KEYWDS REVDAT 1 10-AUG-11 3O0J 0 JRNL AUTH Y.R.FREUND,T.AKAMA,M.R.ALLEY,J.ANTUNES,C.DONG,K.JARNAGIN, JRNL AUTH 2 R.KIMURA,J.A.NIEMAN,K.R.MAPLES,J.J.PLATTNER,F.ROCK,R.SHARMA, JRNL AUTH 3 R.SINGH,V.SANDERS,Y.ZHOU JRNL TITL BORON-BASED PHOSPHODIESTERASE INHIBITORS SHOW NOVEL BINDING JRNL TITL 2 OF BORON TO PDE4 BIMETAL CENTER. JRNL REF FEBS LETT. V. 586 3410 2012 JRNL REFN ISSN 0014-5793 JRNL PMID 22841723 JRNL DOI 10.1016/J.FEBSLET.2012.07.058 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 23826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1392 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.88 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.63000 REMARK 3 B22 (A**2) : 1.63000 REMARK 3 B33 (A**2) : -3.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.304 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2811 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2529 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3795 ; 1.065 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5884 ; 0.751 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 4.949 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;33.613 ;24.786 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 496 ;12.777 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.151 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 424 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3090 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 550 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 700 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2691 ; 0.160 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1450 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1637 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 138 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.078 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.100 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 15 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2169 ; 2.234 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 662 ; 0.554 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2694 ; 2.715 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1338 ; 4.383 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1096 ; 5.691 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060511. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.000000 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PILATUS REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25081 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 57.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, PH 7.4, HANGING DROP VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.50700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 26.80550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.80550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 171.76050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.80550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 26.80550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.25350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.80550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 26.80550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 171.76050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 26.80550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.80550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.25350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.50700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 163 CG CD OE1 OE2 REMARK 480 LYS A 168 CD CE NZ REMARK 480 LYS A 365 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 B16 3OJ A 485 O HOH A 78 1.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 374 79.95 -117.73 REMARK 500 ASP A 375 -83.48 -50.56 REMARK 500 ILE A 450 -60.84 -124.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 78 O REMARK 620 2 HIS A 238 NE2 165.4 REMARK 620 3 HIS A 274 NE2 98.9 94.7 REMARK 620 4 ASP A 275 OD2 87.4 89.2 81.9 REMARK 620 5 ASP A 392 OD1 94.6 90.9 89.4 171.2 REMARK 620 6 3OJ A 485 O17 72.0 94.1 170.3 94.2 94.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 2 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 77 O REMARK 620 2 HOH A 78 O 95.9 REMARK 620 3 ASP A 275 OD1 166.0 91.5 REMARK 620 4 3OJ A 485 O15 97.2 73.1 96.3 REMARK 620 5 HOH A 495 O 84.9 95.3 82.5 168.3 REMARK 620 6 HOH A 496 O 87.3 169.3 87.6 96.4 95.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3OJ A 485 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 486 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 487 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 17 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 18 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 19 DBREF 3O0J A 162 484 UNP Q07343 PDE4B_HUMAN 334 656 SEQRES 1 A 323 ASN GLU ASP HIS LEU ALA LYS GLU LEU GLU ASP LEU ASN SEQRES 2 A 323 LYS TRP GLY LEU ASN ILE PHE ASN VAL ALA GLY TYR SER SEQRES 3 A 323 HIS ASN ARG PRO LEU THR CYS ILE MET TYR ALA ILE PHE SEQRES 4 A 323 GLN GLU ARG ASP LEU LEU LYS THR PHE ARG ILE SER SER SEQRES 5 A 323 ASP THR PHE ILE THR TYR MET MET THR LEU GLU ASP HIS SEQRES 6 A 323 TYR HIS SER ASP VAL ALA TYR HIS ASN SER LEU HIS ALA SEQRES 7 A 323 ALA ASP VAL ALA GLN SER THR HIS VAL LEU LEU SER THR SEQRES 8 A 323 PRO ALA LEU ASP ALA VAL PHE THR ASP LEU GLU ILE LEU SEQRES 9 A 323 ALA ALA ILE PHE ALA ALA ALA ILE HIS ASP VAL ASP HIS SEQRES 10 A 323 PRO GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SER SEQRES 11 A 323 GLU LEU ALA LEU MET TYR ASN ASP GLU SER VAL LEU GLU SEQRES 12 A 323 ASN HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN GLU SEQRES 13 A 323 GLU HIS CYS ASP ILE PHE MET ASN LEU THR LYS LYS GLN SEQRES 14 A 323 ARG GLN THR LEU ARG LYS MET VAL ILE ASP MET VAL LEU SEQRES 15 A 323 ALA THR ASP MET SER LYS HIS MET SER LEU LEU ALA ASP SEQRES 16 A 323 LEU LYS THR MET VAL GLU THR LYS LYS VAL THR SER SER SEQRES 17 A 323 GLY VAL LEU LEU LEU ASP ASN TYR THR ASP ARG ILE GLN SEQRES 18 A 323 VAL LEU ARG ASN MET VAL HIS CYS ALA ASP LEU SER ASN SEQRES 19 A 323 PRO THR LYS SER LEU GLU LEU TYR ARG GLN TRP THR ASP SEQRES 20 A 323 ARG ILE MET GLU GLU PHE PHE GLN GLN GLY ASP LYS GLU SEQRES 21 A 323 ARG GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP LYS SEQRES 22 A 323 HIS THR ALA SER VAL GLU LYS SER GLN VAL GLY PHE ILE SEQRES 23 A 323 ASP TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA ASP SEQRES 24 A 323 LEU VAL GLN PRO ASP ALA GLN ASP ILE LEU ASP THR LEU SEQRES 25 A 323 GLU ASP ASN ARG ASN TRP TYR GLN SER MET ILE HET ZN A 1 1 HET MG A 2 1 HET 3OJ A 485 21 HET EDO A 486 4 HET EDO A 487 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO A 8 4 HET EDO A 9 4 HET EDO A 11 4 HET EDO A 12 4 HET EDO A 14 4 HET EDO A 16 4 HET EDO A 17 4 HET EDO A 18 4 HET EDO A 19 4 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 3OJ 4-[(1-HYDROXY-1,3-DIHYDRO-2,1-BENZOXABOROL-5-YL) HETNAM 2 3OJ OXY]BENZENE-1,2-DICARBONITRILE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ZN ZN 2+ FORMUL 3 MG MG 2+ FORMUL 4 3OJ C15 H9 B N2 O3 FORMUL 5 EDO 14(C2 H6 O2) FORMUL 19 HOH *134(H2 O) HELIX 1 1 ASN A 162 GLU A 171 1 10 HELIX 2 2 ASN A 179 SER A 187 1 9 HELIX 3 3 ARG A 190 ARG A 203 1 14 HELIX 4 4 ASP A 204 PHE A 209 1 6 HELIX 5 5 SER A 212 HIS A 226 1 15 HELIX 6 6 ASN A 235 SER A 251 1 17 HELIX 7 7 THR A 252 ASP A 256 5 5 HELIX 8 8 THR A 260 HIS A 274 1 15 HELIX 9 9 SER A 282 THR A 289 1 8 HELIX 10 10 SER A 291 TYR A 297 1 7 HELIX 11 11 SER A 301 LEU A 314 1 14 HELIX 12 12 LEU A 315 GLU A 317 5 3 HELIX 13 13 THR A 327 ALA A 344 1 18 HELIX 14 14 THR A 345 SER A 348 5 4 HELIX 15 15 LYS A 349 THR A 363 1 15 HELIX 16 16 ASN A 376 LEU A 393 1 18 HELIX 17 17 SER A 394 LYS A 398 5 5 HELIX 18 18 SER A 399 ARG A 424 1 26 HELIX 19 19 SER A 438 ILE A 450 1 13 HELIX 20 20 ILE A 450 GLN A 463 1 14 HELIX 21 21 ALA A 466 MET A 483 1 18 LINK ZN ZN A 1 O HOH A 78 1555 1555 2.11 LINK ZN ZN A 1 NE2 HIS A 238 1555 1555 2.13 LINK ZN ZN A 1 NE2 HIS A 274 1555 1555 2.21 LINK ZN ZN A 1 OD2 ASP A 275 1555 1555 2.20 LINK ZN ZN A 1 OD1 ASP A 392 1555 1555 2.18 LINK ZN ZN A 1 O17 3OJ A 485 1555 1555 2.19 LINK MG MG A 2 O HOH A 77 1555 1555 2.10 LINK MG MG A 2 O HOH A 78 1555 1555 2.08 LINK MG MG A 2 OD1 ASP A 275 1555 1555 2.08 LINK MG MG A 2 O15 3OJ A 485 1555 1555 2.08 LINK MG MG A 2 O HOH A 495 1555 1555 1.90 LINK MG MG A 2 O HOH A 496 1555 1555 1.93 CISPEP 1 GLN A 463 PRO A 464 0 -3.16 SITE 1 AC1 6 HOH A 78 HIS A 238 HIS A 274 ASP A 275 SITE 2 AC1 6 ASP A 392 3OJ A 485 SITE 1 AC2 6 HOH A 77 HOH A 78 ASP A 275 3OJ A 485 SITE 2 AC2 6 HOH A 495 HOH A 496 SITE 1 AC3 11 ZN A 1 MG A 2 HOH A 78 HIS A 234 SITE 2 AC3 11 HIS A 238 ASP A 275 MET A 347 ASP A 392 SITE 3 AC3 11 MET A 431 PHE A 446 HOH A 496 SITE 1 AC4 6 EDO A 18 THR A 208 PHE A 209 ASN A 325 SITE 2 AC4 6 LEU A 326 GLN A 330 SITE 1 AC5 10 EDO A 11 ARG A 210 ILE A 211 SER A 212 SITE 2 AC5 10 THR A 215 ASP A 321 ILE A 322 MET A 324 SITE 3 AC5 10 ASN A 325 HOH A 490 SITE 1 AC6 2 SER A 251 ASP A 256 SITE 1 AC7 5 LEU A 249 THR A 252 TRP A 458 ASP A 465 SITE 2 AC7 5 ILE A 469 SITE 1 AC8 3 ASP A 340 LYS A 349 ARG A 385 SITE 1 AC9 3 LEU A 293 TYR A 297 HIS A 306 SITE 1 BC1 5 GLY A 280 VAL A 281 GLU A 413 PHE A 414 SITE 2 BC1 5 GLN A 417 SITE 1 BC2 5 SER A 212 ASP A 214 THR A 215 HIS A 319 SITE 2 BC2 5 EDO A 487 SITE 1 BC3 3 HOH A 109 ARG A 331 ARG A 335 SITE 1 BC4 2 GLU A 202 SER A 251 SITE 1 BC5 6 HOH A 55 LEU A 250 LEU A 255 ALA A 257 SITE 2 BC5 6 VAL A 258 PHE A 259 SITE 1 BC6 7 ARG A 203 ASP A 204 LEU A 205 THR A 208 SITE 2 BC6 7 ASP A 261 ILE A 264 HOH A 493 SITE 1 BC7 5 HOH A 101 THR A 208 ASP A 261 GLN A 330 SITE 2 BC7 5 EDO A 486 SITE 1 BC8 2 GLU A 300 LYS A 349 CRYST1 53.611 53.611 229.014 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018653 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004367 0.00000