HEADER HYDROLASE 19-JUL-10 3O0M TITLE CRYSTAL STRUCTURE OF A ZN-BOUND HISTIDINE TRIAD FAMILY PROTEIN FROM TITLE 2 MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIT FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS STR. MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: 4533102, MSMEG_5028; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, NIH, NIAID, SBRI, UW, EMERALD BIOSTRUCTURES, HYDROLASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3O0M 1 REMARK SEQADV LINK REVDAT 2 22-APR-15 3O0M 1 JRNL VERSN REVDAT 1 04-AUG-10 3O0M 0 JRNL AUTH L.BAUGH,I.PHAN,D.W.BEGLEY,M.C.CLIFTON,B.ARMOUR,D.M.DRANOW, JRNL AUTH 2 B.M.TAYLOR,M.M.MURUTHI,J.ABENDROTH,J.W.FAIRMAN,D.FOX, JRNL AUTH 3 S.H.DIETERICH,B.L.STAKER,A.S.GARDBERG,R.CHOI,S.N.HEWITT, JRNL AUTH 4 A.J.NAPULI,J.MYERS,L.K.BARRETT,Y.ZHANG,M.FERRELL,E.MUNDT, JRNL AUTH 5 K.THOMPKINS,N.TRAN,S.LYONS-ABBOTT,A.ABRAMOV,A.SEKAR, JRNL AUTH 6 D.SERBZHINSKIY,D.LORIMER,G.W.BUCHKO,R.STACY,L.J.STEWART, JRNL AUTH 7 T.E.EDWARDS,W.C.VAN VOORHIS,P.J.MYLER JRNL TITL INCREASING THE STRUCTURAL COVERAGE OF TUBERCULOSIS DRUG JRNL TITL 2 TARGETS. JRNL REF TUBERCULOSIS (EDINB) V. 95 142 2015 JRNL REFN ISSN 1472-9792 JRNL PMID 25613812 JRNL DOI 10.1016/J.TUBE.2014.12.003 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 21053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1062 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1258 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 37 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2044 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 241 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : 1.67000 REMARK 3 B33 (A**2) : -0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.283 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2164 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1427 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2952 ; 1.362 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3459 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 6.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;36.919 ;22.708 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 321 ;11.911 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.837 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2436 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 452 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1374 ; 0.529 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 557 ; 0.120 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2194 ; 0.970 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 790 ; 1.637 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 754 ; 2.639 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8570 46.9870 11.3580 REMARK 3 T TENSOR REMARK 3 T11: 0.0188 T22: 0.0120 REMARK 3 T33: 0.0346 T12: -0.0062 REMARK 3 T13: -0.0052 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.1190 L22: 0.2781 REMARK 3 L33: 1.5653 L12: -0.1027 REMARK 3 L13: 0.1191 L23: -0.0271 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: 0.0351 S13: 0.0094 REMARK 3 S21: 0.0196 S22: -0.0110 S23: 0.0195 REMARK 3 S31: 0.0098 S32: 0.0225 S33: -0.0355 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 150 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2080 75.3260 28.8450 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: 0.0184 REMARK 3 T33: 0.0303 T12: 0.0007 REMARK 3 T13: -0.0079 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.5455 L22: 0.3618 REMARK 3 L33: 1.4547 L12: 0.2631 REMARK 3 L13: -0.2516 L23: -0.0900 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.0323 S13: -0.0183 REMARK 3 S21: 0.0064 S22: -0.0123 S23: -0.0034 REMARK 3 S31: -0.0342 S32: 0.1021 S33: -0.0452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3O0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060514. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SATURN REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21077 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 35.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Y23 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG A4; 30 % MPD, 0.1 M ACETATE PH REMARK 280 4.6, 20 MM CACL2, MYSMA.00754.A.A1 AT 19.9 MG/ML, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K, TEMPERATURE 289K, PH REMARK 280 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.57500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.76000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.57500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 31.76000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -13.95415 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 75.21657 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 ALA A 114 REMARK 465 LYS A 115 REMARK 465 GLY A 116 REMARK 465 MET A 117 REMARK 465 VAL A 118 REMARK 465 MET A 119 REMARK 465 GLN A 144 REMARK 465 ASP A 145 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 114 REMARK 465 LYS B 115 REMARK 465 GLY B 116 REMARK 465 MET B 117 REMARK 465 VAL B 118 REMARK 465 MET B 119 REMARK 465 GLU B 143 REMARK 465 GLN B 144 REMARK 465 ASP B 145 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 470 ARG A 31 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 121 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 SER B 2 OG REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 ARG B 31 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 ARG B 120 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 121 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 92 9.74 87.01 REMARK 500 PHE A 96 52.23 -92.65 REMARK 500 ASP A 124 83.55 -150.51 REMARK 500 PHE B 92 10.45 81.87 REMARK 500 ASP B 124 83.02 -161.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 151 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 3 SG REMARK 620 2 CYS A 6 SG 117.3 REMARK 620 3 HIS A 45 ND1 110.4 105.6 REMARK 620 4 HIS A 97 ND1 111.2 110.3 100.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 151 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 3 SG REMARK 620 2 CYS B 6 SG 120.2 REMARK 620 3 HIS B 45 ND1 110.0 104.0 REMARK 620 4 HIS B 97 ND1 110.7 110.4 99.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 146 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP B 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 147 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYSMA.00754.A RELATED DB: TARGETDB DBREF 3O0M A 1 145 UNP A0R291 A0R291_MYCS2 1 145 DBREF 3O0M B 1 145 UNP A0R291 A0R291_MYCS2 1 145 SEQADV 3O0M GLY A -3 UNP A0R291 EXPRESSION TAG SEQADV 3O0M PRO A -2 UNP A0R291 EXPRESSION TAG SEQADV 3O0M GLY A -1 UNP A0R291 EXPRESSION TAG SEQADV 3O0M SER A 0 UNP A0R291 EXPRESSION TAG SEQADV 3O0M GLY B -3 UNP A0R291 EXPRESSION TAG SEQADV 3O0M PRO B -2 UNP A0R291 EXPRESSION TAG SEQADV 3O0M GLY B -1 UNP A0R291 EXPRESSION TAG SEQADV 3O0M SER B 0 UNP A0R291 EXPRESSION TAG SEQRES 1 A 149 GLY PRO GLY SER MET SER CYS VAL PHE CYS ALA ILE VAL SEQRES 2 A 149 SER GLY ASP ALA PRO ALA ILE ARG ILE TYR GLU ASP GLU SEQRES 3 A 149 ASN PHE LEU GLY ILE LEU ASP ILE ARG PRO PHE THR ARG SEQRES 4 A 149 GLY HIS THR LEU VAL ILE PRO LYS THR HIS THR VAL ASP SEQRES 5 A 149 LEU THR ASP THR PRO PRO GLU THR VAL ALA GLY MET ALA SEQRES 6 A 149 ALA VAL GLY GLN ARG ILE ALA ARG ALA ALA ARG GLU SER SEQRES 7 A 149 GLY LEU HIS ALA ASP GLY ASN ASN ILE ALA ILE ASN ASP SEQRES 8 A 149 GLY LYS ALA ALA PHE GLN THR VAL PHE HIS ILE HIS LEU SEQRES 9 A 149 HIS VAL VAL PRO ARG ARG ASN GLY ASP LYS LEU SER PHE SEQRES 10 A 149 ALA LYS GLY MET VAL MET ARG ARG ASP PRO ASP ARG GLU SEQRES 11 A 149 GLU SER GLY ARG LEU LEU ARG ALA ALA LEU ALA GLN LEU SEQRES 12 A 149 ASP SER ALA GLU GLN ASP SEQRES 1 B 149 GLY PRO GLY SER MET SER CYS VAL PHE CYS ALA ILE VAL SEQRES 2 B 149 SER GLY ASP ALA PRO ALA ILE ARG ILE TYR GLU ASP GLU SEQRES 3 B 149 ASN PHE LEU GLY ILE LEU ASP ILE ARG PRO PHE THR ARG SEQRES 4 B 149 GLY HIS THR LEU VAL ILE PRO LYS THR HIS THR VAL ASP SEQRES 5 B 149 LEU THR ASP THR PRO PRO GLU THR VAL ALA GLY MET ALA SEQRES 6 B 149 ALA VAL GLY GLN ARG ILE ALA ARG ALA ALA ARG GLU SER SEQRES 7 B 149 GLY LEU HIS ALA ASP GLY ASN ASN ILE ALA ILE ASN ASP SEQRES 8 B 149 GLY LYS ALA ALA PHE GLN THR VAL PHE HIS ILE HIS LEU SEQRES 9 B 149 HIS VAL VAL PRO ARG ARG ASN GLY ASP LYS LEU SER PHE SEQRES 10 B 149 ALA LYS GLY MET VAL MET ARG ARG ASP PRO ASP ARG GLU SEQRES 11 B 149 GLU SER GLY ARG LEU LEU ARG ALA ALA LEU ALA GLN LEU SEQRES 12 B 149 ASP SER ALA GLU GLN ASP HET ZN A 151 1 HET ACT A 146 4 HET AMP A 155 23 HET MPD A 147 8 HET ZN B 151 1 HET AMP B 155 23 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 AMP 2(C10 H14 N5 O7 P) FORMUL 6 MPD C6 H14 O2 FORMUL 9 HOH *241(H2 O) HELIX 1 1 CYS A 3 SER A 10 1 8 HELIX 2 2 PRO A 53 SER A 74 1 22 HELIX 3 3 GLY A 88 PHE A 92 5 5 HELIX 4 4 ASP A 124 ALA A 142 1 19 HELIX 5 5 CYS B 3 SER B 10 1 8 HELIX 6 6 PRO B 53 SER B 74 1 22 HELIX 7 7 GLY B 88 PHE B 92 5 5 HELIX 8 8 ASP B 124 ALA B 142 1 19 SHEET 1 A 5 ARG A 17 GLU A 20 0 SHEET 2 A 5 PHE A 24 LEU A 28 -1 O GLY A 26 N TYR A 19 SHEET 3 A 5 THR A 38 PRO A 42 -1 O ILE A 41 N LEU A 25 SHEET 4 A 5 LEU A 100 ARG A 105 -1 O LEU A 100 N VAL A 40 SHEET 5 A 5 GLY A 80 ALA A 84 -1 N ALA A 84 O HIS A 101 SHEET 1 B 5 ARG B 17 GLU B 20 0 SHEET 2 B 5 PHE B 24 LEU B 28 -1 O GLY B 26 N ILE B 18 SHEET 3 B 5 THR B 38 PRO B 42 -1 O ILE B 41 N LEU B 25 SHEET 4 B 5 LEU B 100 ARG B 105 -1 O VAL B 102 N THR B 38 SHEET 5 B 5 GLY B 80 ALA B 84 -1 N ALA B 84 O HIS B 101 LINK SG CYS A 3 ZN ZN A 151 1555 1555 2.24 LINK SG CYS A 6 ZN ZN A 151 1555 1555 2.33 LINK ND1 HIS A 45 ZN ZN A 151 1555 1555 2.11 LINK ND1 HIS A 97 ZN ZN A 151 1555 1555 2.08 LINK SG CYS B 3 ZN ZN B 151 1555 1555 2.15 LINK SG CYS B 6 ZN ZN B 151 1555 1555 2.31 LINK ND1 HIS B 45 ZN ZN B 151 1555 1555 2.11 LINK ND1 HIS B 97 ZN ZN B 151 1555 1555 2.15 SITE 1 AC1 4 CYS A 3 CYS A 6 HIS A 45 HIS A 97 SITE 1 AC2 4 CYS B 3 CYS B 6 HIS B 45 HIS B 97 SITE 1 AC3 4 ASP A 124 ARG A 130 PHE B 96 HOH B 188 SITE 1 AC4 18 VAL A 4 PHE A 5 LEU A 28 ASP A 29 SITE 2 AC4 18 ILE A 30 ARG A 31 LEU A 39 ASN A 86 SITE 3 AC4 18 PHE A 92 GLN A 93 THR A 94 VAL A 95 SITE 4 AC4 18 HIS A 99 HIS A 101 HOH A 186 HOH A 189 SITE 5 AC4 18 HOH A 192 HOH A 232 SITE 1 AC5 21 VAL B 4 PHE B 5 ILE B 8 ILE B 27 SITE 2 AC5 21 ASP B 29 ILE B 30 ARG B 31 LEU B 39 SITE 3 AC5 21 ASN B 86 PHE B 92 GLN B 93 THR B 94 SITE 4 AC5 21 VAL B 95 HIS B 99 HIS B 101 HOH B 165 SITE 5 AC5 21 HOH B 180 HOH B 190 HOH B 203 HOH B 227 SITE 6 AC5 21 HOH B 245 SITE 1 AC6 7 ARG A 72 HOH A 239 HOH A 240 HOH A 242 SITE 2 AC6 7 GLU B 73 ALA B 135 HOH B 159 CRYST1 59.150 63.520 76.500 90.00 100.51 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016906 0.000000 0.003136 0.00000 SCALE2 0.000000 0.015743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013295 0.00000