HEADER SIGNALING PROTEIN 21-JUL-10 3O1I TITLE CRYSTAL STRUCTURE OF THE TORS SENSOR DOMAIN - TORT COMPLEX IN THE TITLE 2 ABSENCE OF LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN TORS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SENSOR DOMAIN (UNP RESIDUES 51-323); COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PERIPLASMIC PROTEIN TORT; COMPND 9 CHAIN: D, C; COMPND 10 FRAGMENT: UNP RESIDUES 31-329; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 3 ORGANISM_TAXID: 670; SOURCE 4 STRAIN: EB10; SOURCE 5 GENE: TORS, VPA0675; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-T; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: VIBRIO PARAHAEMOLYTICUS; SOURCE 13 ORGANISM_TAXID: 670; SOURCE 14 STRAIN: EB10; SOURCE 15 GENE: TORT, VPA0674; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ORIGAMIB DE3 PLYSS; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET-T KEYWDS LIGAND FREE, TWO COMPONENT SENSOR, PERIPLASMIC BINDING PROTEIN, TMAO, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.O.MOORE,W.A.HENDRICKSON REVDAT 4 03-APR-24 3O1I 1 REMARK SEQADV REVDAT 3 27-MAR-13 3O1I 1 REMARK REVDAT 2 26-DEC-12 3O1I 1 JRNL REVDAT 1 21-DEC-11 3O1I 0 JRNL AUTH J.O.MOORE,W.A.HENDRICKSON JRNL TITL AN ASYMMETRY-TO-SYMMETRY SWITCH IN SIGNAL TRANSMISSION BY JRNL TITL 2 THE HISTIDINE KINASE RECEPTOR FOR TMAO. JRNL REF STRUCTURE V. 20 729 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22483119 JRNL DOI 10.1016/J.STR.2012.02.021 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2050435.460 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.291 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2107 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6583 REMARK 3 BIN R VALUE (WORKING SET) : 0.3430 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 365 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.81000 REMARK 3 B22 (A**2) : 0.55000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM SIGMAA (A) : 0.49 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.59 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 20.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.470 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.550 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.240 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.600 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 48.94 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : PEG40014C.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : PEG40014C.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3O1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98009 REMARK 200 MONOCHROMATOR : HORIZONTALLY DEFLECTING AND REMARK 200 FOCUSING CRYSTAL PRECEDED BY A REMARK 200 VERTICALLY FOCUSING MIRROR. REMARK 200 OPTICS : SLITS AND MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 9.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : 0.42100 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: ISOPROPANOL BOUND STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1-4% PEG 400, 1.0-1.7M AMSO4, 100MM REMARK 280 TRIS PH8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.40500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.40500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.85500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 182.26000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.85500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 182.26000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.40500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.85500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 182.26000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.40500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.85500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 182.26000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 47 REMARK 465 SER A 48 REMARK 465 ASN A 318 REMARK 465 LYS A 319 REMARK 465 THR A 320 REMARK 465 THR A 321 REMARK 465 THR A 322 REMARK 465 LYS A 323 REMARK 465 GLY B 47 REMARK 465 SER B 48 REMARK 465 LYS B 319 REMARK 465 THR B 320 REMARK 465 THR B 321 REMARK 465 THR B 322 REMARK 465 LYS B 323 REMARK 465 GLY D 26 REMARK 465 SER D 27 REMARK 465 GLY D 28 REMARK 465 SER D 29 REMARK 465 THR D 172 REMARK 465 ARG D 173 REMARK 465 GLY D 174 REMARK 465 GLY D 175 REMARK 465 THR D 176 REMARK 465 GLY C 26 REMARK 465 SER C 27 REMARK 465 GLY C 28 REMARK 465 SER C 29 REMARK 465 PHE C 328 REMARK 465 SER C 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS D 161 NZ LYS D 161 3654 1.72 REMARK 500 CB ASN C 112 CB ASN C 112 3554 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 184 CD GLU A 184 OE2 0.077 REMARK 500 GLU B 184 CD GLU B 184 OE2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 198 -16.99 -48.45 REMARK 500 VAL A 201 -61.55 -123.72 REMARK 500 ALA A 255 59.53 -101.40 REMARK 500 VAL A 256 -143.94 -100.49 REMARK 500 GLU A 257 -65.90 -91.14 REMARK 500 VAL A 278 -36.67 -36.22 REMARK 500 ASP A 315 -64.90 -95.12 REMARK 500 ASP A 316 -2.05 -52.49 REMARK 500 MET B 52 -70.85 -60.53 REMARK 500 GLU B 83 -72.13 -46.83 REMARK 500 PHE B 107 47.62 -89.53 REMARK 500 ASP B 258 106.23 -43.44 REMARK 500 PRO B 259 -70.92 -54.43 REMARK 500 HIS D 39 -173.55 -173.31 REMARK 500 LEU D 40 44.66 -155.57 REMARK 500 ALA D 68 -18.46 -43.01 REMARK 500 ASN D 73 50.47 -55.77 REMARK 500 THR D 118 -92.20 -102.47 REMARK 500 PRO D 170 -164.27 -48.46 REMARK 500 ILE D 187 -16.56 -146.42 REMARK 500 LYS D 188 -9.94 -57.95 REMARK 500 SER D 190 -166.60 -164.61 REMARK 500 ASP D 191 47.10 -109.19 REMARK 500 ALA D 200 167.67 179.91 REMARK 500 ASP D 241 18.93 47.62 REMARK 500 HIS D 244 43.33 -84.85 REMARK 500 LEU D 267 -67.31 -106.35 REMARK 500 ALA D 269 107.73 161.94 REMARK 500 PRO D 300 160.50 -49.62 REMARK 500 SER D 318 -45.62 -135.95 REMARK 500 HIS C 39 -175.72 176.54 REMARK 500 LEU C 40 58.13 -148.37 REMARK 500 ASN C 73 54.44 -93.90 REMARK 500 ASP C 98 136.90 167.85 REMARK 500 ASN C 105 -12.34 -145.41 REMARK 500 VAL C 119 -17.23 -144.20 REMARK 500 THR C 130 -6.28 -53.91 REMARK 500 LYS C 161 120.68 -38.52 REMARK 500 PRO C 170 -130.63 -59.29 REMARK 500 ARG C 171 35.07 -145.31 REMARK 500 THR C 172 -95.84 -155.06 REMARK 500 ARG C 173 92.40 -38.20 REMARK 500 THR C 176 -127.40 -124.32 REMARK 500 LYS C 177 -35.43 -32.87 REMARK 500 ASP C 191 56.08 -98.80 REMARK 500 ASP C 196 -175.96 -178.73 REMARK 500 ALA C 200 149.78 176.33 REMARK 500 MET C 217 -70.08 -52.36 REMARK 500 ASN C 264 5.45 51.25 REMARK 500 ALA C 269 110.01 168.83 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE4 B 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I9Y RELATED DB: PDB REMARK 900 E. COLI TORS MONOMER STRUCTURE REMARK 900 RELATED ID: 3I9W RELATED DB: PDB REMARK 900 V. PARAHAEMOLYTICUS TORS MONOMER STRUCTURE REMARK 900 RELATED ID: 3O1H RELATED DB: PDB REMARK 900 RELATED ID: 3O1J RELATED DB: PDB DBREF 3O1I A 51 323 UNP Q87ID1 Q87ID1_VIBPA 51 323 DBREF 3O1I B 51 323 UNP Q87ID1 Q87ID1_VIBPA 51 323 DBREF 3O1I D 31 329 UNP Q87ID2 Q87ID2_VIBPA 31 329 DBREF 3O1I C 31 329 UNP Q87ID2 Q87ID2_VIBPA 31 329 SEQADV 3O1I GLY A 47 UNP Q87ID1 EXPRESSION TAG SEQADV 3O1I SER A 48 UNP Q87ID1 EXPRESSION TAG SEQADV 3O1I GLY A 49 UNP Q87ID1 EXPRESSION TAG SEQADV 3O1I SER A 50 UNP Q87ID1 EXPRESSION TAG SEQADV 3O1I LYS A 323 UNP Q87ID1 PHE 323 CONFLICT SEQADV 3O1I GLY B 47 UNP Q87ID1 EXPRESSION TAG SEQADV 3O1I SER B 48 UNP Q87ID1 EXPRESSION TAG SEQADV 3O1I GLY B 49 UNP Q87ID1 EXPRESSION TAG SEQADV 3O1I SER B 50 UNP Q87ID1 EXPRESSION TAG SEQADV 3O1I LYS B 323 UNP Q87ID1 PHE 323 CONFLICT SEQADV 3O1I GLY D 26 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I SER D 27 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I GLY D 28 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I SER D 29 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I ASP D 30 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I GLY C 26 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I SER C 27 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I GLY C 28 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I SER C 29 UNP Q87ID2 EXPRESSION TAG SEQADV 3O1I ASP C 30 UNP Q87ID2 EXPRESSION TAG SEQRES 1 A 277 GLY SER GLY SER ALA MET ILE GLU ALA ARG GLN VAL SER SEQRES 2 A 277 GLU LEU SER THR ARG ILE ILE SER SER VAL GLN MET LEU SEQRES 3 A 277 SER ASN ALA GLN ASN GLU GLN GLU ARG LYS GLU ALA GLY SEQRES 4 A 277 ARG VAL LEU PHE GLU GLN LEU GLU SER LEU LEU THR HIS SEQRES 5 A 277 ILE LYS GLU LEU GLY GLY GLU SER PHE ASP SER LYS LEU SEQRES 6 A 277 LEU ASP ALA LEU GLU SER ASN VAL GLN ASN VAL ILE ASN SEQRES 7 A 277 ASN LEU ALA GLU LEU GLY VAL THR VAL GLU ARG LYS LEU SEQRES 8 A 277 TRP LEU ALA LYS GLU ILE ASP THR ARG VAL GLU GLU MET SEQRES 9 A 277 ARG LEU LEU SER GLU GLU LEU GLU GLN LEU THR ARG THR SEQRES 10 A 277 GLN VAL GLN ASN THR SER THR ILE ALA VAL ALA ASN VAL SEQRES 11 A 277 THR HIS ILE TYR ASP LEU LEU GLU ALA ASN LYS LYS ASP SEQRES 12 A 277 GLN VAL TYR GLN ALA LEU ASP ALA LEU VAL GLU VAL ASP SEQRES 13 A 277 LEU ASP LEU THR GLU ARG LEU HIS GLU LEU HIS LEU LEU SEQRES 14 A 277 ALA PHE LYS MET LEU ASN GLN ILE GLU GLU ALA ARG THR SEQRES 15 A 277 LEU THR ASN VAL ASP ARG ILE GLN GLN ILE GLN THR ALA SEQRES 16 A 277 PHE GLU ASN ASN LEU LYS ILE MET LYS ARG ARG VAL LEU SEQRES 17 A 277 ALA VAL GLU ASP PRO THR ARG SER LYS GLN MET SER GLN SEQRES 18 A 277 LEU LEU THR GLU LEU GLY LYS ARG GLN VAL VAL PHE THR SEQRES 19 A 277 ILE LEU LEU GLN GLN TYR GLU ASN ASN GLU GLN SER GLN SEQRES 20 A 277 GLN LEU MET GLN LYS THR LEU GLU LEU PHE SER GLU LEU SEQRES 21 A 277 ASN SER THR VAL ASN LYS LEU VAL ASP ASP SER ASN LYS SEQRES 22 A 277 THR THR THR LYS SEQRES 1 B 277 GLY SER GLY SER ALA MET ILE GLU ALA ARG GLN VAL SER SEQRES 2 B 277 GLU LEU SER THR ARG ILE ILE SER SER VAL GLN MET LEU SEQRES 3 B 277 SER ASN ALA GLN ASN GLU GLN GLU ARG LYS GLU ALA GLY SEQRES 4 B 277 ARG VAL LEU PHE GLU GLN LEU GLU SER LEU LEU THR HIS SEQRES 5 B 277 ILE LYS GLU LEU GLY GLY GLU SER PHE ASP SER LYS LEU SEQRES 6 B 277 LEU ASP ALA LEU GLU SER ASN VAL GLN ASN VAL ILE ASN SEQRES 7 B 277 ASN LEU ALA GLU LEU GLY VAL THR VAL GLU ARG LYS LEU SEQRES 8 B 277 TRP LEU ALA LYS GLU ILE ASP THR ARG VAL GLU GLU MET SEQRES 9 B 277 ARG LEU LEU SER GLU GLU LEU GLU GLN LEU THR ARG THR SEQRES 10 B 277 GLN VAL GLN ASN THR SER THR ILE ALA VAL ALA ASN VAL SEQRES 11 B 277 THR HIS ILE TYR ASP LEU LEU GLU ALA ASN LYS LYS ASP SEQRES 12 B 277 GLN VAL TYR GLN ALA LEU ASP ALA LEU VAL GLU VAL ASP SEQRES 13 B 277 LEU ASP LEU THR GLU ARG LEU HIS GLU LEU HIS LEU LEU SEQRES 14 B 277 ALA PHE LYS MET LEU ASN GLN ILE GLU GLU ALA ARG THR SEQRES 15 B 277 LEU THR ASN VAL ASP ARG ILE GLN GLN ILE GLN THR ALA SEQRES 16 B 277 PHE GLU ASN ASN LEU LYS ILE MET LYS ARG ARG VAL LEU SEQRES 17 B 277 ALA VAL GLU ASP PRO THR ARG SER LYS GLN MET SER GLN SEQRES 18 B 277 LEU LEU THR GLU LEU GLY LYS ARG GLN VAL VAL PHE THR SEQRES 19 B 277 ILE LEU LEU GLN GLN TYR GLU ASN ASN GLU GLN SER GLN SEQRES 20 B 277 GLN LEU MET GLN LYS THR LEU GLU LEU PHE SER GLU LEU SEQRES 21 B 277 ASN SER THR VAL ASN LYS LEU VAL ASP ASP SER ASN LYS SEQRES 22 B 277 THR THR THR LYS SEQRES 1 D 304 GLY SER GLY SER ASP GLU LYS ILE CYS ALA ILE TYR PRO SEQRES 2 D 304 HIS LEU LYS ASP SER TYR TRP LEU SER VAL ASN TYR GLY SEQRES 3 D 304 MET VAL SER GLU ALA GLU LYS GLN GLY VAL ASN LEU ARG SEQRES 4 D 304 VAL LEU GLU ALA GLY GLY TYR PRO ASN LYS SER ARG GLN SEQRES 5 D 304 GLU GLN GLN LEU ALA LEU CYS THR GLN TRP GLY ALA ASN SEQRES 6 D 304 ALA ILE ILE LEU GLY THR VAL ASP PRO HIS ALA TYR GLU SEQRES 7 D 304 HIS ASN LEU LYS SER TRP VAL GLY ASN THR PRO VAL PHE SEQRES 8 D 304 ALA THR VAL ASN GLN LEU ASP LEU ASP GLU GLU GLN SER SEQRES 9 D 304 THR LEU LEU LYS GLY GLU VAL GLY VAL ASP TRP TYR TRP SEQRES 10 D 304 MET GLY TYR GLU ALA GLY LYS TYR LEU ALA GLU ARG HIS SEQRES 11 D 304 PRO LYS GLY SER GLY LYS THR ASN ILE ALA LEU LEU LEU SEQRES 12 D 304 GLY PRO ARG THR ARG GLY GLY THR LYS PRO VAL THR THR SEQRES 13 D 304 GLY PHE TYR GLU ALA ILE LYS ASN SER ASP ILE HIS ILE SEQRES 14 D 304 VAL ASP SER PHE TRP ALA ASP ASN ASP LYS GLU LEU GLN SEQRES 15 D 304 ARG ASN LEU VAL GLN ARG VAL ILE ASP MET GLY ASN ILE SEQRES 16 D 304 ASP TYR ILE VAL GLY SER ALA VAL ALA ILE GLU ALA ALA SEQRES 17 D 304 ILE SER GLU LEU ARG SER ALA ASP LYS THR HIS ASP ILE SEQRES 18 D 304 GLY LEU VAL SER VAL TYR LEU SER HIS GLY VAL TYR ARG SEQRES 19 D 304 GLY LEU LEU ARG ASN LYS VAL LEU PHE ALA PRO THR ASP SEQRES 20 D 304 LYS MET VAL GLN GLN GLY ARG LEU SER VAL MET GLN ALA SEQRES 21 D 304 ALA HIS TYR LEU ARG HIS GLN PRO TYR GLU LYS GLN ALA SEQRES 22 D 304 SER PRO ILE ILE LYS PRO LEU THR PRO LYS THR LEU HIS SEQRES 23 D 304 ASP ASP THR ILE GLU GLU SER LEU SER PRO SER GLU TYR SEQRES 24 D 304 ARG PRO THR PHE SER SEQRES 1 C 304 GLY SER GLY SER ASP GLU LYS ILE CYS ALA ILE TYR PRO SEQRES 2 C 304 HIS LEU LYS ASP SER TYR TRP LEU SER VAL ASN TYR GLY SEQRES 3 C 304 MET VAL SER GLU ALA GLU LYS GLN GLY VAL ASN LEU ARG SEQRES 4 C 304 VAL LEU GLU ALA GLY GLY TYR PRO ASN LYS SER ARG GLN SEQRES 5 C 304 GLU GLN GLN LEU ALA LEU CYS THR GLN TRP GLY ALA ASN SEQRES 6 C 304 ALA ILE ILE LEU GLY THR VAL ASP PRO HIS ALA TYR GLU SEQRES 7 C 304 HIS ASN LEU LYS SER TRP VAL GLY ASN THR PRO VAL PHE SEQRES 8 C 304 ALA THR VAL ASN GLN LEU ASP LEU ASP GLU GLU GLN SER SEQRES 9 C 304 THR LEU LEU LYS GLY GLU VAL GLY VAL ASP TRP TYR TRP SEQRES 10 C 304 MET GLY TYR GLU ALA GLY LYS TYR LEU ALA GLU ARG HIS SEQRES 11 C 304 PRO LYS GLY SER GLY LYS THR ASN ILE ALA LEU LEU LEU SEQRES 12 C 304 GLY PRO ARG THR ARG GLY GLY THR LYS PRO VAL THR THR SEQRES 13 C 304 GLY PHE TYR GLU ALA ILE LYS ASN SER ASP ILE HIS ILE SEQRES 14 C 304 VAL ASP SER PHE TRP ALA ASP ASN ASP LYS GLU LEU GLN SEQRES 15 C 304 ARG ASN LEU VAL GLN ARG VAL ILE ASP MET GLY ASN ILE SEQRES 16 C 304 ASP TYR ILE VAL GLY SER ALA VAL ALA ILE GLU ALA ALA SEQRES 17 C 304 ILE SER GLU LEU ARG SER ALA ASP LYS THR HIS ASP ILE SEQRES 18 C 304 GLY LEU VAL SER VAL TYR LEU SER HIS GLY VAL TYR ARG SEQRES 19 C 304 GLY LEU LEU ARG ASN LYS VAL LEU PHE ALA PRO THR ASP SEQRES 20 C 304 LYS MET VAL GLN GLN GLY ARG LEU SER VAL MET GLN ALA SEQRES 21 C 304 ALA HIS TYR LEU ARG HIS GLN PRO TYR GLU LYS GLN ALA SEQRES 22 C 304 SER PRO ILE ILE LYS PRO LEU THR PRO LYS THR LEU HIS SEQRES 23 C 304 ASP ASP THR ILE GLU GLU SER LEU SER PRO SER GLU TYR SEQRES 24 C 304 ARG PRO THR PHE SER HET PE4 B 1 21 HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 5 PE4 C16 H34 O8 FORMUL 6 HOH *98(H2 O) HELIX 1 1 SER A 50 ASN A 74 1 25 HELIX 2 2 ASN A 77 GLU A 105 1 29 HELIX 3 3 ASP A 108 ALA A 185 1 78 HELIX 4 4 LYS A 187 VAL A 201 1 15 HELIX 5 5 VAL A 201 ARG A 227 1 27 HELIX 6 6 ASN A 231 VAL A 253 1 23 HELIX 7 7 THR A 260 ARG A 275 1 16 HELIX 8 8 GLN A 276 ASP A 316 1 41 HELIX 9 9 SER B 50 SER B 73 1 24 HELIX 10 10 ASN B 77 GLU B 105 1 29 HELIX 11 11 ASP B 108 ALA B 185 1 78 HELIX 12 12 LYS B 187 GLU B 200 1 14 HELIX 13 13 VAL B 201 ARG B 227 1 27 HELIX 14 14 ASN B 231 ALA B 255 1 25 HELIX 15 15 ASP B 258 LYS B 274 1 17 HELIX 16 16 GLN B 276 ASN B 318 1 43 HELIX 17 17 ASP D 42 GLY D 60 1 19 HELIX 18 18 ASN D 73 TRP D 87 1 15 HELIX 19 19 ASN D 105 VAL D 110 1 6 HELIX 20 20 GLN D 128 THR D 130 5 3 HELIX 21 21 ASP D 139 GLU D 153 1 15 HELIX 22 22 LYS D 177 ALA D 186 1 10 HELIX 23 23 ASP D 203 GLY D 218 1 16 HELIX 24 24 SER D 226 ARG D 238 1 13 HELIX 25 25 LYS D 242 ILE D 246 5 5 HELIX 26 26 SER D 254 LEU D 262 1 9 HELIX 27 27 LYS D 273 ARG D 290 1 18 HELIX 28 28 HIS D 311 GLU D 317 1 7 HELIX 29 29 ASP C 42 LYS C 58 1 17 HELIX 30 30 ASN C 73 GLY C 88 1 16 HELIX 31 31 ASP C 98 TYR C 102 5 5 HELIX 32 32 LEU C 106 GLY C 111 1 6 HELIX 33 33 GLU C 127 THR C 130 5 4 HELIX 34 34 TRP C 140 GLU C 153 1 14 HELIX 35 35 THR C 176 LYS C 188 1 13 HELIX 36 36 ASP C 203 GLY C 218 1 16 HELIX 37 37 SER C 226 ALA C 240 1 15 HELIX 38 38 SER C 254 LEU C 262 1 9 HELIX 39 39 LYS C 273 LEU C 289 1 17 HELIX 40 40 HIS C 311 GLU C 317 1 7 SHEET 1 A 5 ASN D 62 GLU D 67 0 SHEET 2 A 5 LYS D 32 TYR D 37 1 N ALA D 35 O ARG D 64 SHEET 3 A 5 ALA D 91 LEU D 94 1 O ILE D 93 N ILE D 36 SHEET 4 A 5 VAL D 115 ALA D 117 1 O PHE D 116 N ILE D 92 SHEET 5 A 5 LEU D 132 GLU D 135 1 O LYS D 133 N VAL D 115 SHEET 1 B 4 ILE D 192 ASP D 196 0 SHEET 2 B 4 THR D 162 LEU D 167 1 N THR D 162 O HIS D 193 SHEET 3 B 4 TYR D 222 GLY D 225 1 O VAL D 224 N ALA D 165 SHEET 4 B 4 GLY D 247 LEU D 248 1 O GLY D 247 N ILE D 223 SHEET 1 C 6 ASN C 62 GLU C 67 0 SHEET 2 C 6 LYS C 32 TYR C 37 1 N ILE C 33 O ASN C 62 SHEET 3 C 6 ALA C 91 LEU C 94 1 O ILE C 93 N ILE C 36 SHEET 4 C 6 VAL C 115 ALA C 117 1 O PHE C 116 N ILE C 92 SHEET 5 C 6 LEU C 132 VAL C 136 1 O VAL C 136 N ALA C 117 SHEET 6 C 6 GLN C 297 ALA C 298 1 O ALA C 298 N GLU C 135 SHEET 1 D 4 ILE C 192 SER C 197 0 SHEET 2 D 4 THR C 162 LEU C 167 1 N THR C 162 O HIS C 193 SHEET 3 D 4 TYR C 222 GLY C 225 1 O TYR C 222 N ALA C 165 SHEET 4 D 4 GLY C 247 SER C 250 1 O VAL C 249 N ILE C 223 SHEET 1 E 2 ALA C 269 THR C 271 0 SHEET 2 E 2 LYS C 303 LEU C 305 -1 O LYS C 303 N THR C 271 SSBOND 1 CYS D 34 CYS D 84 1555 1555 2.04 SSBOND 2 CYS C 34 CYS C 84 1555 1555 2.04 SITE 1 AC1 7 ARG B 135 TRP B 138 ARG B 146 LYS B 274 SITE 2 AC1 7 ARG B 275 VAL B 277 GLN B 284 CRYST1 115.710 364.520 80.810 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008642 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002743 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012375 0.00000