HEADER CHAPERONE/INHIBITOR 22-JUL-10 3O2F TITLE STRUCTURE OF THE N-DOMAIN OF GRP94 BOUND TO THE HSP90 INHIBITOR PU-H54 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPLASMIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 69-286, 328-337; COMPND 5 SYNONYM: HEAT SHOCK PROTEIN 90 KDA BETA MEMBER 1, 94 KDA GLUCOSE- COMPND 6 REGULATED PROTEIN, GRP-94; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOGS; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 GENE: GRP94, HSP90B1, TRA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3 KEYWDS HSP90 HEAT-SHOCK PROTEINS, CHAPERONE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.M.SEIDLER,D.T.GEWIRTH REVDAT 5 21-FEB-24 3O2F 1 REMARK SEQADV REVDAT 4 23-AUG-17 3O2F 1 SOURCE REMARK REVDAT 3 20-NOV-13 3O2F 1 JRNL REVDAT 2 11-SEP-13 3O2F 1 JRNL REVDAT 1 05-OCT-11 3O2F 0 JRNL AUTH P.D.PATEL,P.YAN,P.M.SEIDLER,H.J.PATEL,W.SUN,C.YANG,N.S.QUE, JRNL AUTH 2 T.TALDONE,P.FINOTTI,R.A.STEPHANI,D.T.GEWIRTH,G.CHIOSIS JRNL TITL PARALOG-SELECTIVE HSP90 INHIBITORS DEFINE TUMOR-SPECIFIC JRNL TITL 2 REGULATION OF HER2. JRNL REF NAT.CHEM.BIOL. V. 9 677 2013 JRNL REFN ISSN 1552-4450 JRNL PMID 23995768 JRNL DOI 10.1038/NCHEMBIO.1335 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 45178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2251 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3545 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4797 ; 1.445 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 442 ; 6.278 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;33.013 ;25.548 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;13.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.168 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2581 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2216 ; 0.605 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3545 ; 1.054 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1329 ; 2.007 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1252 ; 3.013 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 31.7660 23.5700 10.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.1446 T22: 0.6751 REMARK 3 T33: 0.5280 T12: -0.0704 REMARK 3 T13: -0.0191 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 10.7325 L22: 14.4440 REMARK 3 L33: 21.0616 L12: 6.2983 REMARK 3 L13: -9.7076 L23: -9.2827 REMARK 3 S TENSOR REMARK 3 S11: -0.2371 S12: -0.0847 S13: -0.4276 REMARK 3 S21: -0.0454 S22: -0.1572 S23: -1.0145 REMARK 3 S31: 0.3340 S32: 1.4250 S33: 0.3942 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 3.2270 16.6840 6.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.2882 REMARK 3 T33: 0.2220 T12: -0.0166 REMARK 3 T13: 0.1291 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.4575 L22: 3.8366 REMARK 3 L33: 3.2943 L12: 0.2516 REMARK 3 L13: 1.5599 L23: -0.1932 REMARK 3 S TENSOR REMARK 3 S11: -0.0711 S12: -0.0886 S13: -0.0271 REMARK 3 S21: 0.1013 S22: 0.0314 S23: 0.3142 REMARK 3 S31: -0.0681 S32: 0.0033 S33: 0.0398 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3300 21.0130 -1.3330 REMARK 3 T TENSOR REMARK 3 T11: 0.3443 T22: 1.1089 REMARK 3 T33: 1.0925 T12: -0.2548 REMARK 3 T13: 0.1977 T23: -0.1916 REMARK 3 L TENSOR REMARK 3 L11: 19.5273 L22: 19.9617 REMARK 3 L33: 9.4244 L12: -14.5120 REMARK 3 L13: 9.2515 L23: -0.2602 REMARK 3 S TENSOR REMARK 3 S11: 0.6456 S12: 1.9620 S13: 0.5791 REMARK 3 S21: -2.0714 S22: 0.1019 S23: -1.2535 REMARK 3 S31: -0.7806 S32: 2.2200 S33: -0.7475 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9480 10.1110 3.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.0749 T22: 0.2686 REMARK 3 T33: 0.1887 T12: 0.0175 REMARK 3 T13: 0.0755 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.2589 L22: 4.3437 REMARK 3 L33: 2.8260 L12: 0.6623 REMARK 3 L13: 1.8025 L23: 0.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.1417 S12: 0.0230 S13: -0.1748 REMARK 3 S21: -0.1878 S22: -0.0117 S23: 0.0107 REMARK 3 S31: 0.2408 S32: 0.2945 S33: -0.1299 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): -3.5290 13.4470 19.6630 REMARK 3 T TENSOR REMARK 3 T11: 0.2889 T22: 0.6198 REMARK 3 T33: 0.3921 T12: -0.0638 REMARK 3 T13: 0.3106 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 2.1568 L22: 7.4888 REMARK 3 L33: 5.0007 L12: -0.0560 REMARK 3 L13: 2.7824 L23: 0.1473 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.9229 S13: -0.1150 REMARK 3 S21: 1.1221 S22: -0.1197 S23: 0.9035 REMARK 3 S31: 0.1281 S32: -0.9092 S33: 0.0995 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 76 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1080 27.6650 29.8220 REMARK 3 T TENSOR REMARK 3 T11: 0.6190 T22: 0.0705 REMARK 3 T33: 0.2983 T12: -0.0310 REMARK 3 T13: -0.2199 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.4480 L22: 1.0401 REMARK 3 L33: 4.6174 L12: 0.3469 REMARK 3 L13: 0.9033 L23: -0.0765 REMARK 3 S TENSOR REMARK 3 S11: -0.1155 S12: 0.2248 S13: 0.1187 REMARK 3 S21: 0.6584 S22: 0.0402 S23: -0.3921 REMARK 3 S31: -0.3079 S32: -0.0652 S33: 0.0753 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 144 B 182 REMARK 3 ORIGIN FOR THE GROUP (A): 29.4310 31.0580 31.9180 REMARK 3 T TENSOR REMARK 3 T11: 0.6315 T22: 0.3097 REMARK 3 T33: 0.3380 T12: 0.0105 REMARK 3 T13: -0.2278 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 4.7564 L22: 7.3626 REMARK 3 L33: 3.6390 L12: -0.2199 REMARK 3 L13: 2.9126 L23: 2.0354 REMARK 3 S TENSOR REMARK 3 S11: 0.2496 S12: 1.0361 S13: -0.2186 REMARK 3 S21: -0.0588 S22: 0.0122 S23: -1.3075 REMARK 3 S31: -0.4198 S32: 0.7020 S33: -0.2619 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 183 B 252 REMARK 3 ORIGIN FOR THE GROUP (A): 25.8620 34.9050 33.6980 REMARK 3 T TENSOR REMARK 3 T11: 0.5614 T22: 0.1060 REMARK 3 T33: 0.2414 T12: -0.0162 REMARK 3 T13: -0.2638 T23: -0.0272 REMARK 3 L TENSOR REMARK 3 L11: 2.4485 L22: 5.1700 REMARK 3 L33: 7.7541 L12: 0.1828 REMARK 3 L13: 3.4104 L23: 0.1392 REMARK 3 S TENSOR REMARK 3 S11: -0.1502 S12: 0.3962 S13: -0.0761 REMARK 3 S21: 0.5740 S22: 0.1615 S23: -0.8504 REMARK 3 S31: -0.3754 S32: 0.5435 S33: -0.0113 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 253 B 285 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3540 31.1850 34.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.6723 T22: 0.4555 REMARK 3 T33: 0.3547 T12: 0.1013 REMARK 3 T13: 0.0826 T23: -0.0184 REMARK 3 L TENSOR REMARK 3 L11: 5.8339 L22: 10.2836 REMARK 3 L33: 8.7310 L12: 0.0883 REMARK 3 L13: 2.6031 L23: -1.1623 REMARK 3 S TENSOR REMARK 3 S11: -0.2251 S12: -0.4780 S13: -0.1643 REMARK 3 S21: 0.9176 S22: -0.1410 S23: 0.9532 REMARK 3 S31: 0.2671 S32: -1.5011 S33: 0.3660 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 286 B 337 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4770 35.0940 44.7770 REMARK 3 T TENSOR REMARK 3 T11: 1.9352 T22: 1.2249 REMARK 3 T33: 1.1636 T12: 0.1644 REMARK 3 T13: 0.0848 T23: 0.0174 REMARK 3 L TENSOR REMARK 3 L11: 19.6476 L22: 1.2101 REMARK 3 L33: 5.3553 L12: 2.9417 REMARK 3 L13: 0.3906 L23: 1.9918 REMARK 3 S TENSOR REMARK 3 S11: -0.3492 S12: -0.1553 S13: 2.0134 REMARK 3 S21: -0.4771 S22: 0.1777 S23: 0.3711 REMARK 3 S31: -0.8157 S32: -0.1737 S33: 0.1714 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3O2F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45178 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-FOLD MOLAR EXCESS PU-H54, 14-17% REMARK 280 ISOPROPANOL, 300-375 MM MGCL2, 0.1-1% GLYCEROL, 100 MM HEPES, PH REMARK 280 7.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.84300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 65 REMARK 465 SER A 66 REMARK 465 HIS A 67 REMARK 465 MET A 68 REMARK 465 GLY A 287 REMARK 465 GLY A 288 REMARK 465 GLY A 289 REMARK 465 GLY A 290 REMARK 465 GLY B 65 REMARK 465 SER B 66 REMARK 465 HIS B 67 REMARK 465 MET B 68 REMARK 465 LEU B 69 REMARK 465 ARG B 70 REMARK 465 GLU B 71 REMARK 465 LYS B 72 REMARK 465 SER B 73 REMARK 465 GLY B 170 REMARK 465 THR B 171 REMARK 465 SER B 172 REMARK 465 ASN B 176 REMARK 465 LYS B 177 REMARK 465 GLY B 287 REMARK 465 GLY B 288 REMARK 465 GLY B 289 REMARK 465 GLY B 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 ASN A 83 CG OD1 ND2 REMARK 470 ASN A 176 CG OD1 ND2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 MET A 178 CG SD CE REMARK 470 GLU A 180 CG CD OE1 OE2 REMARK 470 GLN A 182 CG CD OE1 NE2 REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 PHE B 76 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PHE B 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 79 CG CD OE1 NE2 REMARK 470 GLU B 157 CG CD OE1 OE2 REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 LYS B 168 CG CD CE NZ REMARK 470 PHE B 174 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 175 CG CD1 CD2 REMARK 470 MET B 178 CG SD CE REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 GLN B 182 CG CD OE1 NE2 REMARK 470 GLU B 183 CG CD OE1 OE2 REMARK 470 ASP B 184 CG OD1 OD2 REMARK 470 GLN B 186 CG CD OE1 NE2 REMARK 470 SER B 187 OG REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 470 GLU B 253 CG CD OE1 OE2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 GLN B 273 CG CD OE1 NE2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 LYS B 328 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 74 131.53 -177.20 REMARK 500 GLN A 79 9.53 -64.25 REMARK 500 ILE A 90 5.40 -57.91 REMARK 500 ASN A 96 54.03 -142.24 REMARK 500 THR A 150 40.88 -103.91 REMARK 500 MET A 178 -63.96 -134.95 REMARK 500 SER A 227 -15.78 81.12 REMARK 500 ARG A 243 141.82 -171.47 REMARK 500 TYR B 94 44.20 -94.00 REMARK 500 LEU B 126 45.05 -93.93 REMARK 500 LYS B 168 51.24 -97.48 REMARK 500 GLU B 180 7.27 90.68 REMARK 500 ASP B 184 61.90 32.08 REMARK 500 SER B 227 -19.72 81.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 73 GLU A 74 134.76 REMARK 500 GLU A 74 LYS A 75 76.55 REMARK 500 LYS A 75 PHE A 76 -71.38 REMARK 500 GLU A 183 ASP A 184 111.62 REMARK 500 GLN B 182 GLU B 183 142.38 REMARK 500 GLU B 183 ASP B 184 114.50 REMARK 500 GLY B 185 GLN B 186 124.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P54 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPA A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P54 B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2FWY RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN HSP90-ALPHA N-DOMAIN BOUND TO THE HSP90 REMARK 900 INHIBITOR PU-H64 REMARK 900 RELATED ID: 3O0I RELATED DB: PDB REMARK 900 STRUCTURE OF THE HUMAN HSP90-ALPHA N-DOMAIN BOUND TO THE HSP90 REMARK 900 INHIBITOR PU-H54 DBREF 3O2F A 69 286 UNP P41148 ENPL_CANFA 69 286 DBREF 3O2F A 328 337 UNP P41148 ENPL_CANFA 328 337 DBREF 3O2F B 69 286 UNP P41148 ENPL_CANFA 69 286 DBREF 3O2F B 328 337 UNP P41148 ENPL_CANFA 328 337 SEQADV 3O2F GLY A 65 UNP P41148 EXPRESSION TAG SEQADV 3O2F SER A 66 UNP P41148 EXPRESSION TAG SEQADV 3O2F HIS A 67 UNP P41148 EXPRESSION TAG SEQADV 3O2F MET A 68 UNP P41148 EXPRESSION TAG SEQADV 3O2F GLY A 287 UNP P41148 LINKER SEQADV 3O2F GLY A 288 UNP P41148 LINKER SEQADV 3O2F GLY A 289 UNP P41148 LINKER SEQADV 3O2F GLY A 290 UNP P41148 LINKER SEQADV 3O2F GLY B 65 UNP P41148 EXPRESSION TAG SEQADV 3O2F SER B 66 UNP P41148 EXPRESSION TAG SEQADV 3O2F HIS B 67 UNP P41148 EXPRESSION TAG SEQADV 3O2F MET B 68 UNP P41148 EXPRESSION TAG SEQADV 3O2F GLY B 287 UNP P41148 LINKER SEQADV 3O2F GLY B 288 UNP P41148 LINKER SEQADV 3O2F GLY B 289 UNP P41148 LINKER SEQADV 3O2F GLY B 290 UNP P41148 LINKER SEQRES 1 A 236 GLY SER HIS MET LEU ARG GLU LYS SER GLU LYS PHE ALA SEQRES 2 A 236 PHE GLN ALA GLU VAL ASN ARG MET MET LYS LEU ILE ILE SEQRES 3 A 236 ASN SER LEU TYR LYS ASN LYS GLU ILE PHE LEU ARG GLU SEQRES 4 A 236 LEU ILE SER ASN ALA SER ASP ALA LEU ASP LYS ILE ARG SEQRES 5 A 236 LEU ILE SER LEU THR ASP GLU ASN ALA LEU ALA GLY ASN SEQRES 6 A 236 GLU GLU LEU THR VAL LYS ILE LYS CYS ASP LYS GLU LYS SEQRES 7 A 236 ASN LEU LEU HIS VAL THR ASP THR GLY VAL GLY MET THR SEQRES 8 A 236 ARG GLU GLU LEU VAL LYS ASN LEU GLY THR ILE ALA LYS SEQRES 9 A 236 SER GLY THR SER GLU PHE LEU ASN LYS MET THR GLU ALA SEQRES 10 A 236 GLN GLU ASP GLY GLN SER THR SER GLU LEU ILE GLY GLN SEQRES 11 A 236 PHE GLY VAL GLY PHE TYR SER ALA PHE LEU VAL ALA ASP SEQRES 12 A 236 LYS VAL ILE VAL THR SER LYS HIS ASN ASN ASP THR GLN SEQRES 13 A 236 HIS ILE TRP GLU SER ASP SER ASN GLU PHE SER VAL ILE SEQRES 14 A 236 ALA ASP PRO ARG GLY ASN THR LEU GLY ARG GLY THR THR SEQRES 15 A 236 ILE THR LEU VAL LEU LYS GLU GLU ALA SER ASP TYR LEU SEQRES 16 A 236 GLU LEU ASP THR ILE LYS ASN LEU VAL LYS LYS TYR SER SEQRES 17 A 236 GLN PHE ILE ASN PHE PRO ILE TYR VAL TRP SER SER LYS SEQRES 18 A 236 THR GLY GLY GLY GLY LYS THR VAL TRP ASP TRP GLU LEU SEQRES 19 A 236 MET ASN SEQRES 1 B 236 GLY SER HIS MET LEU ARG GLU LYS SER GLU LYS PHE ALA SEQRES 2 B 236 PHE GLN ALA GLU VAL ASN ARG MET MET LYS LEU ILE ILE SEQRES 3 B 236 ASN SER LEU TYR LYS ASN LYS GLU ILE PHE LEU ARG GLU SEQRES 4 B 236 LEU ILE SER ASN ALA SER ASP ALA LEU ASP LYS ILE ARG SEQRES 5 B 236 LEU ILE SER LEU THR ASP GLU ASN ALA LEU ALA GLY ASN SEQRES 6 B 236 GLU GLU LEU THR VAL LYS ILE LYS CYS ASP LYS GLU LYS SEQRES 7 B 236 ASN LEU LEU HIS VAL THR ASP THR GLY VAL GLY MET THR SEQRES 8 B 236 ARG GLU GLU LEU VAL LYS ASN LEU GLY THR ILE ALA LYS SEQRES 9 B 236 SER GLY THR SER GLU PHE LEU ASN LYS MET THR GLU ALA SEQRES 10 B 236 GLN GLU ASP GLY GLN SER THR SER GLU LEU ILE GLY GLN SEQRES 11 B 236 PHE GLY VAL GLY PHE TYR SER ALA PHE LEU VAL ALA ASP SEQRES 12 B 236 LYS VAL ILE VAL THR SER LYS HIS ASN ASN ASP THR GLN SEQRES 13 B 236 HIS ILE TRP GLU SER ASP SER ASN GLU PHE SER VAL ILE SEQRES 14 B 236 ALA ASP PRO ARG GLY ASN THR LEU GLY ARG GLY THR THR SEQRES 15 B 236 ILE THR LEU VAL LEU LYS GLU GLU ALA SER ASP TYR LEU SEQRES 16 B 236 GLU LEU ASP THR ILE LYS ASN LEU VAL LYS LYS TYR SER SEQRES 17 B 236 GLN PHE ILE ASN PHE PRO ILE TYR VAL TRP SER SER LYS SEQRES 18 B 236 THR GLY GLY GLY GLY LYS THR VAL TRP ASP TRP GLU LEU SEQRES 19 B 236 MET ASN HET P54 A 1 24 HET IPA A 338 4 HET IPA A 2 4 HET GOL A 3 6 HET IPA A 4 4 HET IPA A 5 4 HET P54 B 1 24 HETNAM P54 8-[(2,4-DIMETHYLPHENYL)SULFANYL]-3-PENT-4-YN-1-YL-3H- HETNAM 2 P54 PURIN-6-AMINE HETNAM IPA ISOPROPYL ALCOHOL HETNAM GOL GLYCEROL HETSYN IPA 2-PROPANOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 P54 2(C18 H19 N5 S) FORMUL 4 IPA 4(C3 H8 O) FORMUL 6 GOL C3 H8 O3 FORMUL 10 HOH *216(H2 O) HELIX 1 1 ALA A 77 ALA A 80 5 4 HELIX 2 2 GLU A 81 ILE A 90 1 10 HELIX 3 3 ASN A 91 LYS A 97 5 7 HELIX 4 4 GLU A 98 ASP A 122 1 25 HELIX 5 5 THR A 155 SER A 169 1 15 HELIX 6 6 THR A 171 LYS A 177 1 7 HELIX 7 7 ASP A 184 VAL A 205 1 22 HELIX 8 8 GLU A 253 LEU A 259 5 7 HELIX 9 9 GLU A 260 SER A 272 1 13 HELIX 10 10 GLN A 273 ILE A 275 5 3 HELIX 11 11 LYS B 75 TYR B 94 1 20 HELIX 12 12 GLU B 98 ASP B 122 1 25 HELIX 13 13 THR B 155 LYS B 168 1 14 HELIX 14 14 GLN B 186 VAL B 205 1 20 HELIX 15 15 GLU B 253 LEU B 259 5 7 HELIX 16 16 GLU B 260 TYR B 271 1 12 SHEET 1 A 8 PHE A 230 ALA A 234 0 SHEET 2 A 8 HIS A 221 SER A 225 -1 N ILE A 222 O ILE A 233 SHEET 3 A 8 ALA A 206 LYS A 214 -1 N VAL A 211 O TRP A 223 SHEET 4 A 8 GLY A 244 LEU A 251 -1 O THR A 248 N ILE A 210 SHEET 5 A 8 LEU A 144 ASP A 149 -1 N ASP A 149 O THR A 245 SHEET 6 A 8 VAL A 134 ASP A 139 -1 N LYS A 135 O THR A 148 SHEET 7 A 8 ILE A 279 LYS A 285 1 O TYR A 280 N VAL A 134 SHEET 8 A 8 VAL A 330 LEU A 335 -1 O VAL A 330 N LYS A 285 SHEET 1 B 8 PHE B 230 ALA B 234 0 SHEET 2 B 8 HIS B 221 SER B 225 -1 N ILE B 222 O ILE B 233 SHEET 3 B 8 ALA B 206 LYS B 214 -1 N VAL B 211 O TRP B 223 SHEET 4 B 8 GLY B 244 LEU B 251 -1 O THR B 248 N ILE B 210 SHEET 5 B 8 LEU B 144 ASP B 149 -1 N ASP B 149 O THR B 245 SHEET 6 B 8 VAL B 134 ASP B 139 -1 N LYS B 135 O THR B 148 SHEET 7 B 8 ILE B 279 LYS B 285 1 O TYR B 280 N VAL B 134 SHEET 8 B 8 VAL B 330 LEU B 335 -1 O VAL B 330 N LYS B 285 CISPEP 1 MET A 178 THR A 179 0 -4.01 CISPEP 2 ALA A 181 GLN A 182 0 -27.88 CISPEP 3 ALA B 181 GLN B 182 0 -9.36 SITE 1 AC1 13 HOH A 17 HOH A 22 HOH A 40 ASN A 107 SITE 2 AC1 13 ASP A 110 ALA A 111 ASP A 149 MET A 154 SITE 3 AC1 13 PHE A 195 PHE A 199 ALA A 202 ILE A 247 SITE 4 AC1 13 HOH A 441 SITE 1 AC2 2 LYS A 135 TYR A 280 SITE 1 AC3 4 MET A 86 ILE A 89 HOH A 401 TYR B 94 SITE 1 AC4 4 ARG A 237 GLY A 238 ASN A 239 HOH A 396 SITE 1 AC5 4 GLU A 224 ASP A 226 GLU A 229 PHE A 230 SITE 1 AC6 4 SER A 92 ASN A 96 LEU B 93 ARG B 102 SITE 1 AC7 12 ASN B 107 ALA B 111 LYS B 114 ASP B 149 SITE 2 AC7 12 MET B 154 LEU B 163 PHE B 195 GLY B 198 SITE 3 AC7 12 PHE B 199 ALA B 202 HOH B 365 HOH B 391 CRYST1 60.960 65.686 85.453 90.00 98.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016404 0.000000 0.002343 0.00000 SCALE2 0.000000 0.015224 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011821 0.00000