data_3O39 # _entry.id 3O39 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3O39 RCSB RCSB060609 WWPDB D_1000060609 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id SPY_ECO57 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3O39 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-07-23 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ruane, K.M.' 1 'Shi, R.' 2 'Cygler, M.' 3 'Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)' 4 # _citation.id primary _citation.title 'Genetic selection designed to stabilize proteins uncovers a chaperone called Spy.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 262 _citation.page_last 269 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21317898 _citation.pdbx_database_id_DOI 10.1038/nsmb.2016 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Quan, S.' 1 ? primary 'Koldewey, P.' 2 ? primary 'Tapley, T.' 3 ? primary 'Kirsch, N.' 4 ? primary 'Ruane, K.M.' 5 ? primary 'Pfizenmaier, J.' 6 ? primary 'Shi, R.' 7 ? primary 'Hofmann, S.' 8 ? primary 'Foit, L.' 9 ? primary 'Ren, G.' 10 ? primary 'Jakob, U.' 11 ? primary 'Xu, Z.' 12 ? primary 'Cygler, M.' 13 ? primary 'Bardwell, J.C.' 14 ? # _cell.entry_id 3O39 _cell.length_a 68.971 _cell.length_b 68.971 _cell.length_c 124.281 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3O39 _symmetry.space_group_name_H-M 'P 62' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Periplasmic protein related to spheroblast formation' 13088.823 2 ? ? 'UNP residues 52-147' ? 2 non-polymer syn 'CADMIUM ION' 112.411 9 ? ? ? ? 3 water nat water 18.015 21 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Spheroplast protein Y' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSSHHHHHHGSFKDLNLTDAQKQQIREI(MSE)KGQRDQ(MSE)KRPPLEERRA(MSE)HDIIASDTFDKAKAEA QIAK(MSE)EEQRKAN(MSE)LAH(MSE)ETQNKIYNILTPEQKKQFNANFEKRLT ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHGSFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQRKANMLAH METQNKIYNILTPEQKKQFNANFEKRLT ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier SPY_ECO57 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 GLY n 1 12 SER n 1 13 PHE n 1 14 LYS n 1 15 ASP n 1 16 LEU n 1 17 ASN n 1 18 LEU n 1 19 THR n 1 20 ASP n 1 21 ALA n 1 22 GLN n 1 23 LYS n 1 24 GLN n 1 25 GLN n 1 26 ILE n 1 27 ARG n 1 28 GLU n 1 29 ILE n 1 30 MSE n 1 31 LYS n 1 32 GLY n 1 33 GLN n 1 34 ARG n 1 35 ASP n 1 36 GLN n 1 37 MSE n 1 38 LYS n 1 39 ARG n 1 40 PRO n 1 41 PRO n 1 42 LEU n 1 43 GLU n 1 44 GLU n 1 45 ARG n 1 46 ARG n 1 47 ALA n 1 48 MSE n 1 49 HIS n 1 50 ASP n 1 51 ILE n 1 52 ILE n 1 53 ALA n 1 54 SER n 1 55 ASP n 1 56 THR n 1 57 PHE n 1 58 ASP n 1 59 LYS n 1 60 ALA n 1 61 LYS n 1 62 ALA n 1 63 GLU n 1 64 ALA n 1 65 GLN n 1 66 ILE n 1 67 ALA n 1 68 LYS n 1 69 MSE n 1 70 GLU n 1 71 GLU n 1 72 GLN n 1 73 ARG n 1 74 LYS n 1 75 ALA n 1 76 ASN n 1 77 MSE n 1 78 LEU n 1 79 ALA n 1 80 HIS n 1 81 MSE n 1 82 GLU n 1 83 THR n 1 84 GLN n 1 85 ASN n 1 86 LYS n 1 87 ILE n 1 88 TYR n 1 89 ASN n 1 90 ILE n 1 91 LEU n 1 92 THR n 1 93 PRO n 1 94 GLU n 1 95 GLN n 1 96 LYS n 1 97 LYS n 1 98 GLN n 1 99 PHE n 1 100 ASN n 1 101 ALA n 1 102 ASN n 1 103 PHE n 1 104 GLU n 1 105 LYS n 1 106 ARG n 1 107 LEU n 1 108 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'ECs2449, spy, Z2775' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'O157:H7 EDL933' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 155864 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8XDZ4_ECO57 _struct_ref.pdbx_db_accession Q8XDZ4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILT PEQKKQFNANFEKRLT ; _struct_ref.pdbx_align_begin 52 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3O39 A 13 ? 108 ? Q8XDZ4 52 ? 147 ? 29 124 2 1 3O39 B 13 ? 108 ? Q8XDZ4 52 ? 147 ? 29 124 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3O39 MSE A 1 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 17 1 1 3O39 GLY A 2 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 18 2 1 3O39 SER A 3 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 19 3 1 3O39 SER A 4 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 20 4 1 3O39 HIS A 5 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 21 5 1 3O39 HIS A 6 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 22 6 1 3O39 HIS A 7 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 23 7 1 3O39 HIS A 8 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 24 8 1 3O39 HIS A 9 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 25 9 1 3O39 HIS A 10 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 26 10 1 3O39 GLY A 11 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 27 11 1 3O39 SER A 12 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 28 12 2 3O39 MSE B 1 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 17 13 2 3O39 GLY B 2 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 18 14 2 3O39 SER B 3 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 19 15 2 3O39 SER B 4 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 20 16 2 3O39 HIS B 5 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 21 17 2 3O39 HIS B 6 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 22 18 2 3O39 HIS B 7 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 23 19 2 3O39 HIS B 8 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 24 20 2 3O39 HIS B 9 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 25 21 2 3O39 HIS B 10 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 26 22 2 3O39 GLY B 11 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 27 23 2 3O39 SER B 12 ? UNP Q8XDZ4 ? ? 'EXPRESSION TAG' 28 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CD non-polymer . 'CADMIUM ION' ? 'Cd 2' 112.411 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 3O39 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.28 _exptl_crystal.density_percent_sol 62.54 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.3M CdCl2, 2.4M Ammonium Sulphate, vapor diffusion, sitting drop, temperature 295K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date 2010-07-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97923 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CLSI BEAMLINE 08ID-1' _diffrn_source.pdbx_synchrotron_site CLSI _diffrn_source.pdbx_synchrotron_beamline 08ID-1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97923 # _reflns.entry_id 3O39 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.60 _reflns.number_obs 19671 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.116 _reflns.pdbx_netI_over_sigmaI 37.07 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3O39 _refine.ls_number_reflns_obs 19513 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.89 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.063 _refine.ls_d_res_high 2.599 _refine.ls_percent_reflns_obs 95.73 _refine.ls_R_factor_obs 0.2450 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2431 _refine.ls_R_factor_R_free 0.2808 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.86 _refine.ls_number_reflns_R_free 949 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 0.500 _refine.occupancy_max 1.000 _refine.correlation_coeff_Fo_to_Fc 0.8870 _refine.correlation_coeff_Fo_to_Fc_free 0.8290 _refine.B_iso_mean ? _refine.aniso_B[1][1] 0.5639 _refine.aniso_B[2][2] 0.5639 _refine.aniso_B[3][3] -1.1277 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.332 _refine.solvent_model_param_bsol 55.470 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.44 _refine.pdbx_overall_phase_error 30.10 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1479 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1509 _refine_hist.d_res_high 2.599 _refine_hist.d_res_low 43.063 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.014 ? ? 1542 'X-RAY DIFFRACTION' ? f_angle_d 1.324 ? ? 2070 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 20.732 ? ? 602 'X-RAY DIFFRACTION' ? f_chiral_restr 0.077 ? ? 232 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 274 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.5990 2.7360 2209 0.2708 79.00 0.2854 . . 84 . . . . 'X-RAY DIFFRACTION' . 2.7360 2.9074 2681 0.2621 96.00 0.3067 . . 120 . . . . 'X-RAY DIFFRACTION' . 2.9074 3.1318 2766 0.2421 100.00 0.2853 . . 152 . . . . 'X-RAY DIFFRACTION' . 3.1318 3.4468 2772 0.2257 100.00 0.2748 . . 151 . . . . 'X-RAY DIFFRACTION' . 3.4468 3.9453 2627 0.2036 97.00 0.2546 . . 142 . . . . 'X-RAY DIFFRACTION' . 3.9453 4.9695 2738 0.1989 100.00 0.2119 . . 167 . . . . 'X-RAY DIFFRACTION' . 4.9695 43.0686 2771 0.2706 99.00 0.3147 . . 133 . . . . # _struct.entry_id 3O39 _struct.title 'Crystal Structure of SPY' _struct.pdbx_descriptor 'Periplasmic protein related to spheroblast formation' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O39 _struct_keywords.text 'alpha-helical, Structural Genomics, Montreal-Kingston Bacterial Structural Genomics Initiative, BSGI, chaperone' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 19 ? GLY A 32 ? THR A 35 GLY A 48 1 ? 14 HELX_P HELX_P2 2 PRO A 41 ? ALA A 53 ? PRO A 57 ALA A 69 1 ? 13 HELX_P HELX_P3 3 ASP A 58 ? MSE A 69 ? ASP A 74 MSE A 85 1 ? 12 HELX_P HELX_P4 4 MSE A 69 ? ASN A 89 ? MSE A 85 ASN A 105 1 ? 21 HELX_P HELX_P5 5 THR A 92 ? ARG A 106 ? THR A 108 ARG A 122 1 ? 15 HELX_P HELX_P6 6 THR B 19 ? ASP B 35 ? THR B 35 ASP B 51 1 ? 17 HELX_P HELX_P7 7 PRO B 41 ? ALA B 53 ? PRO B 57 ALA B 69 1 ? 13 HELX_P HELX_P8 8 ASP B 58 ? ASN B 89 ? ASP B 74 ASN B 105 1 ? 32 HELX_P HELX_P9 9 THR B 92 ? LEU B 107 ? THR B 108 LEU B 123 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ILE 29 C ? ? ? 1_555 A MSE 30 N ? ? A ILE 45 A MSE 46 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale both ? A MSE 30 C ? ? ? 1_555 A LYS 31 N ? ? A MSE 46 A LYS 47 1_555 ? ? ? ? ? ? ? 1.329 ? covale3 covale both ? A GLN 36 C ? ? ? 1_555 A MSE 37 N ? ? A GLN 52 A MSE 53 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale both ? A MSE 37 C ? ? ? 1_555 A LYS 38 N ? ? A MSE 53 A LYS 54 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale both ? A ALA 47 C ? ? ? 1_555 A MSE 48 N ? ? A ALA 63 A MSE 64 1_555 ? ? ? ? ? ? ? 1.324 ? covale6 covale both ? A MSE 48 C ? ? ? 1_555 A HIS 49 N ? ? A MSE 64 A HIS 65 1_555 ? ? ? ? ? ? ? 1.324 ? covale7 covale both ? A LYS 68 C ? ? ? 1_555 A MSE 69 N ? ? A LYS 84 A MSE 85 1_555 ? ? ? ? ? ? ? 1.325 ? covale8 covale both ? A MSE 69 C ? ? ? 1_555 A GLU 70 N ? ? A MSE 85 A GLU 86 1_555 ? ? ? ? ? ? ? 1.324 ? covale9 covale both ? A ASN 76 C ? ? ? 1_555 A MSE 77 N ? ? A ASN 92 A MSE 93 1_555 ? ? ? ? ? ? ? 1.335 ? covale10 covale both ? A MSE 77 C ? ? ? 1_555 A LEU 78 N ? ? A MSE 93 A LEU 94 1_555 ? ? ? ? ? ? ? 1.333 ? covale11 covale both ? A HIS 80 C ? ? ? 1_555 A MSE 81 N ? ? A HIS 96 A MSE 97 1_555 ? ? ? ? ? ? ? 1.323 ? covale12 covale both ? A MSE 81 C ? ? ? 1_555 A GLU 82 N ? ? A MSE 97 A GLU 98 1_555 ? ? ? ? ? ? ? 1.333 ? covale13 covale both ? B ILE 29 C ? ? ? 1_555 B MSE 30 N ? ? B ILE 45 B MSE 46 1_555 ? ? ? ? ? ? ? 1.327 ? covale14 covale both ? B MSE 30 C ? ? ? 1_555 B LYS 31 N ? ? B MSE 46 B LYS 47 1_555 ? ? ? ? ? ? ? 1.326 ? covale15 covale both ? B GLN 36 C ? ? ? 1_555 B MSE 37 N ? ? B GLN 52 B MSE 53 1_555 ? ? ? ? ? ? ? 1.329 ? covale16 covale both ? B MSE 37 C ? ? ? 1_555 B LYS 38 N ? ? B MSE 53 B LYS 54 1_555 ? ? ? ? ? ? ? 1.330 ? covale17 covale both ? B ALA 47 C ? ? ? 1_555 B MSE 48 N ? ? B ALA 63 B MSE 64 1_555 ? ? ? ? ? ? ? 1.331 ? covale18 covale both ? B MSE 48 C ? ? ? 1_555 B HIS 49 N ? ? B MSE 64 B HIS 65 1_555 ? ? ? ? ? ? ? 1.329 ? covale19 covale both ? B LYS 68 C ? ? ? 1_555 B MSE 69 N ? ? B LYS 84 B MSE 85 1_555 ? ? ? ? ? ? ? 1.326 ? covale20 covale both ? B MSE 69 C ? ? ? 1_555 B GLU 70 N ? ? B MSE 85 B GLU 86 1_555 ? ? ? ? ? ? ? 1.326 ? covale21 covale both ? B ASN 76 C ? ? ? 1_555 B MSE 77 N ? ? B ASN 92 B MSE 93 1_555 ? ? ? ? ? ? ? 1.334 ? covale22 covale both ? B MSE 77 C ? ? ? 1_555 B LEU 78 N ? ? B MSE 93 B LEU 94 1_555 ? ? ? ? ? ? ? 1.328 ? covale23 covale both ? B HIS 80 C ? ? ? 1_555 B MSE 81 N ? ? B HIS 96 B MSE 97 1_555 ? ? ? ? ? ? ? 1.326 ? covale24 covale both ? B MSE 81 C ? ? ? 1_555 B GLU 82 N ? ? B MSE 97 B GLU 98 1_555 ? ? ? ? ? ? ? 1.334 ? metalc1 metalc ? ? A GLU 70 OE2 ? ? ? 1_555 G CD . CD ? ? A GLU 86 B CD 3 1_555 ? ? ? ? ? ? ? 2.356 ? metalc2 metalc ? ? A ASP 20 OD2 ? ? ? 1_555 E CD . CD ? ? A ASP 36 A CD 6 1_555 ? ? ? ? ? ? ? 2.586 ? metalc3 metalc ? ? A ASP 50 OD1 ? ? ? 1_555 C CD . CD ? ? A ASP 66 A CD 1 1_555 ? ? ? ? ? ? ? 2.642 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CD A 1' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CD A 2' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CD A 6' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CD A 8' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CD B 3' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CD B 4' AC7 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CD B 5' AC8 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CD B 7' AC9 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CD B 9' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 50 ? ASP A 66 . ? 1_555 ? 2 AC1 3 CD H . ? CD B 4 . ? 6_555 ? 3 AC1 3 ASP B 50 ? ASP B 66 . ? 6_555 ? 4 AC2 4 ASP A 58 ? ASP A 74 . ? 1_555 ? 5 AC2 4 CD I . ? CD B 5 . ? 3_555 ? 6 AC2 4 ASP B 58 ? ASP B 74 . ? 3_555 ? 7 AC2 4 LYS B 61 ? LYS B 77 . ? 3_555 ? 8 AC3 1 ASP A 20 ? ASP A 36 . ? 1_555 ? 9 AC4 3 HOH L . ? HOH A 130 . ? 1_555 ? 10 AC4 3 HOH L . ? HOH A 131 . ? 1_555 ? 11 AC4 3 THR B 56 ? THR B 72 . ? 3_555 ? 12 AC5 5 HOH L . ? HOH A 7 . ? 4_555 ? 13 AC5 5 GLU A 70 ? GLU A 86 . ? 1_555 ? 14 AC5 5 GLU A 70 ? GLU A 86 . ? 4_555 ? 15 AC5 5 GLU B 70 ? GLU B 86 . ? 4_555 ? 16 AC5 5 GLU B 70 ? GLU B 86 . ? 1_555 ? 17 AC6 4 CD C . ? CD A 1 . ? 5_554 ? 18 AC6 4 ARG A 46 ? ARG A 62 . ? 5_554 ? 19 AC6 4 ASP A 50 ? ASP A 66 . ? 5_554 ? 20 AC6 4 ASP B 50 ? ASP B 66 . ? 1_555 ? 21 AC7 3 CD D . ? CD A 2 . ? 2_554 ? 22 AC7 3 ASP A 58 ? ASP A 74 . ? 2_554 ? 23 AC7 3 ASP B 58 ? ASP B 74 . ? 1_555 ? 24 AC8 2 ASP B 20 ? ASP B 36 . ? 1_555 ? 25 AC8 2 GLN B 25 ? GLN B 41 . ? 4_445 ? 26 AC9 1 HOH M . ? HOH B 130 . ? 1_555 ? # _atom_sites.entry_id 3O39 _atom_sites.fract_transf_matrix[1][1] 0.014499 _atom_sites.fract_transf_matrix[1][2] 0.008371 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016742 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008046 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CD N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 17 ? ? ? A . n A 1 2 GLY 2 18 ? ? ? A . n A 1 3 SER 3 19 ? ? ? A . n A 1 4 SER 4 20 ? ? ? A . n A 1 5 HIS 5 21 ? ? ? A . n A 1 6 HIS 6 22 ? ? ? A . n A 1 7 HIS 7 23 ? ? ? A . n A 1 8 HIS 8 24 ? ? ? A . n A 1 9 HIS 9 25 ? ? ? A . n A 1 10 HIS 10 26 ? ? ? A . n A 1 11 GLY 11 27 ? ? ? A . n A 1 12 SER 12 28 ? ? ? A . n A 1 13 PHE 13 29 29 PHE PHE A . n A 1 14 LYS 14 30 30 LYS LYS A . n A 1 15 ASP 15 31 31 ASP ASP A . n A 1 16 LEU 16 32 32 LEU LEU A . n A 1 17 ASN 17 33 33 ASN ASN A . n A 1 18 LEU 18 34 34 LEU LEU A . n A 1 19 THR 19 35 35 THR THR A . n A 1 20 ASP 20 36 36 ASP ASP A . n A 1 21 ALA 21 37 37 ALA ALA A . n A 1 22 GLN 22 38 38 GLN GLN A . n A 1 23 LYS 23 39 39 LYS LYS A . n A 1 24 GLN 24 40 40 GLN GLN A . n A 1 25 GLN 25 41 41 GLN GLN A . n A 1 26 ILE 26 42 42 ILE ILE A . n A 1 27 ARG 27 43 43 ARG ARG A . n A 1 28 GLU 28 44 44 GLU GLU A . n A 1 29 ILE 29 45 45 ILE ILE A . n A 1 30 MSE 30 46 46 MSE MSE A . n A 1 31 LYS 31 47 47 LYS LYS A . n A 1 32 GLY 32 48 48 GLY GLY A . n A 1 33 GLN 33 49 49 GLN GLN A . n A 1 34 ARG 34 50 50 ARG ARG A . n A 1 35 ASP 35 51 51 ASP ASP A . n A 1 36 GLN 36 52 52 GLN GLN A . n A 1 37 MSE 37 53 53 MSE MSE A . n A 1 38 LYS 38 54 54 LYS LYS A . n A 1 39 ARG 39 55 55 ARG ARG A . n A 1 40 PRO 40 56 56 PRO PRO A . n A 1 41 PRO 41 57 57 PRO PRO A . n A 1 42 LEU 42 58 58 LEU LEU A . n A 1 43 GLU 43 59 59 GLU GLU A . n A 1 44 GLU 44 60 60 GLU GLU A . n A 1 45 ARG 45 61 61 ARG ARG A . n A 1 46 ARG 46 62 62 ARG ARG A . n A 1 47 ALA 47 63 63 ALA ALA A . n A 1 48 MSE 48 64 64 MSE MSE A . n A 1 49 HIS 49 65 65 HIS HIS A . n A 1 50 ASP 50 66 66 ASP ASP A . n A 1 51 ILE 51 67 67 ILE ILE A . n A 1 52 ILE 52 68 68 ILE ILE A . n A 1 53 ALA 53 69 69 ALA ALA A . n A 1 54 SER 54 70 70 SER SER A . n A 1 55 ASP 55 71 71 ASP ASP A . n A 1 56 THR 56 72 72 THR THR A . n A 1 57 PHE 57 73 73 PHE PHE A . n A 1 58 ASP 58 74 74 ASP ASP A . n A 1 59 LYS 59 75 75 LYS LYS A . n A 1 60 ALA 60 76 76 ALA ALA A . n A 1 61 LYS 61 77 77 LYS LYS A . n A 1 62 ALA 62 78 78 ALA ALA A . n A 1 63 GLU 63 79 79 GLU GLU A . n A 1 64 ALA 64 80 80 ALA ALA A . n A 1 65 GLN 65 81 81 GLN GLN A . n A 1 66 ILE 66 82 82 ILE ILE A . n A 1 67 ALA 67 83 83 ALA ALA A . n A 1 68 LYS 68 84 84 LYS LYS A . n A 1 69 MSE 69 85 85 MSE MSE A . n A 1 70 GLU 70 86 86 GLU GLU A . n A 1 71 GLU 71 87 87 GLU GLU A . n A 1 72 GLN 72 88 88 GLN GLN A . n A 1 73 ARG 73 89 89 ARG ARG A . n A 1 74 LYS 74 90 90 LYS LYS A . n A 1 75 ALA 75 91 91 ALA ALA A . n A 1 76 ASN 76 92 92 ASN ASN A . n A 1 77 MSE 77 93 93 MSE MSE A . n A 1 78 LEU 78 94 94 LEU LEU A . n A 1 79 ALA 79 95 95 ALA ALA A . n A 1 80 HIS 80 96 96 HIS HIS A . n A 1 81 MSE 81 97 97 MSE MSE A . n A 1 82 GLU 82 98 98 GLU GLU A . n A 1 83 THR 83 99 99 THR THR A . n A 1 84 GLN 84 100 100 GLN GLN A . n A 1 85 ASN 85 101 101 ASN ASN A . n A 1 86 LYS 86 102 102 LYS LYS A . n A 1 87 ILE 87 103 103 ILE ILE A . n A 1 88 TYR 88 104 104 TYR TYR A . n A 1 89 ASN 89 105 105 ASN ASN A . n A 1 90 ILE 90 106 106 ILE ILE A . n A 1 91 LEU 91 107 107 LEU LEU A . n A 1 92 THR 92 108 108 THR THR A . n A 1 93 PRO 93 109 109 PRO PRO A . n A 1 94 GLU 94 110 110 GLU GLU A . n A 1 95 GLN 95 111 111 GLN GLN A . n A 1 96 LYS 96 112 112 LYS LYS A . n A 1 97 LYS 97 113 113 LYS LYS A . n A 1 98 GLN 98 114 114 GLN GLN A . n A 1 99 PHE 99 115 115 PHE PHE A . n A 1 100 ASN 100 116 116 ASN ASN A . n A 1 101 ALA 101 117 117 ALA ALA A . n A 1 102 ASN 102 118 118 ASN ASN A . n A 1 103 PHE 103 119 119 PHE PHE A . n A 1 104 GLU 104 120 120 GLU GLU A . n A 1 105 LYS 105 121 121 LYS LYS A . n A 1 106 ARG 106 122 122 ARG ARG A . n A 1 107 LEU 107 123 123 LEU LEU A . n A 1 108 THR 108 124 124 THR THR A . n B 1 1 MSE 1 17 ? ? ? B . n B 1 2 GLY 2 18 ? ? ? B . n B 1 3 SER 3 19 ? ? ? B . n B 1 4 SER 4 20 ? ? ? B . n B 1 5 HIS 5 21 ? ? ? B . n B 1 6 HIS 6 22 ? ? ? B . n B 1 7 HIS 7 23 ? ? ? B . n B 1 8 HIS 8 24 ? ? ? B . n B 1 9 HIS 9 25 ? ? ? B . n B 1 10 HIS 10 26 ? ? ? B . n B 1 11 GLY 11 27 ? ? ? B . n B 1 12 SER 12 28 ? ? ? B . n B 1 13 PHE 13 29 29 PHE PHE B . n B 1 14 LYS 14 30 30 LYS LYS B . n B 1 15 ASP 15 31 31 ASP ASP B . n B 1 16 LEU 16 32 32 LEU LEU B . n B 1 17 ASN 17 33 33 ASN ASN B . n B 1 18 LEU 18 34 34 LEU LEU B . n B 1 19 THR 19 35 35 THR THR B . n B 1 20 ASP 20 36 36 ASP ASP B . n B 1 21 ALA 21 37 37 ALA ALA B . n B 1 22 GLN 22 38 38 GLN GLN B . n B 1 23 LYS 23 39 39 LYS LYS B . n B 1 24 GLN 24 40 40 GLN GLN B . n B 1 25 GLN 25 41 41 GLN GLN B . n B 1 26 ILE 26 42 42 ILE ILE B . n B 1 27 ARG 27 43 43 ARG ARG B . n B 1 28 GLU 28 44 44 GLU GLU B . n B 1 29 ILE 29 45 45 ILE ILE B . n B 1 30 MSE 30 46 46 MSE MSE B . n B 1 31 LYS 31 47 47 LYS LYS B . n B 1 32 GLY 32 48 48 GLY GLY B . n B 1 33 GLN 33 49 49 GLN GLN B . n B 1 34 ARG 34 50 50 ARG ARG B . n B 1 35 ASP 35 51 51 ASP ASP B . n B 1 36 GLN 36 52 52 GLN GLN B . n B 1 37 MSE 37 53 53 MSE MSE B . n B 1 38 LYS 38 54 54 LYS LYS B . n B 1 39 ARG 39 55 55 ARG ARG B . n B 1 40 PRO 40 56 56 PRO PRO B . n B 1 41 PRO 41 57 57 PRO PRO B . n B 1 42 LEU 42 58 58 LEU LEU B . n B 1 43 GLU 43 59 59 GLU GLU B . n B 1 44 GLU 44 60 60 GLU GLU B . n B 1 45 ARG 45 61 61 ARG ARG B . n B 1 46 ARG 46 62 62 ARG ARG B . n B 1 47 ALA 47 63 63 ALA ALA B . n B 1 48 MSE 48 64 64 MSE MSE B . n B 1 49 HIS 49 65 65 HIS HIS B . n B 1 50 ASP 50 66 66 ASP ASP B . n B 1 51 ILE 51 67 67 ILE ILE B . n B 1 52 ILE 52 68 68 ILE ILE B . n B 1 53 ALA 53 69 69 ALA ALA B . n B 1 54 SER 54 70 70 SER SER B . n B 1 55 ASP 55 71 71 ASP ASP B . n B 1 56 THR 56 72 72 THR THR B . n B 1 57 PHE 57 73 73 PHE PHE B . n B 1 58 ASP 58 74 74 ASP ASP B . n B 1 59 LYS 59 75 75 LYS LYS B . n B 1 60 ALA 60 76 76 ALA ALA B . n B 1 61 LYS 61 77 77 LYS LYS B . n B 1 62 ALA 62 78 78 ALA ALA B . n B 1 63 GLU 63 79 79 GLU GLU B . n B 1 64 ALA 64 80 80 ALA ALA B . n B 1 65 GLN 65 81 81 GLN GLN B . n B 1 66 ILE 66 82 82 ILE ILE B . n B 1 67 ALA 67 83 83 ALA ALA B . n B 1 68 LYS 68 84 84 LYS LYS B . n B 1 69 MSE 69 85 85 MSE MSE B . n B 1 70 GLU 70 86 86 GLU GLU B . n B 1 71 GLU 71 87 87 GLU GLU B . n B 1 72 GLN 72 88 88 GLN GLN B . n B 1 73 ARG 73 89 89 ARG ARG B . n B 1 74 LYS 74 90 90 LYS LYS B . n B 1 75 ALA 75 91 91 ALA ALA B . n B 1 76 ASN 76 92 92 ASN ASN B . n B 1 77 MSE 77 93 93 MSE MSE B . n B 1 78 LEU 78 94 94 LEU LEU B . n B 1 79 ALA 79 95 95 ALA ALA B . n B 1 80 HIS 80 96 96 HIS HIS B . n B 1 81 MSE 81 97 97 MSE MSE B . n B 1 82 GLU 82 98 98 GLU GLU B . n B 1 83 THR 83 99 99 THR THR B . n B 1 84 GLN 84 100 100 GLN GLN B . n B 1 85 ASN 85 101 101 ASN ASN B . n B 1 86 LYS 86 102 102 LYS LYS B . n B 1 87 ILE 87 103 103 ILE ILE B . n B 1 88 TYR 88 104 104 TYR TYR B . n B 1 89 ASN 89 105 105 ASN ASN B . n B 1 90 ILE 90 106 106 ILE ILE B . n B 1 91 LEU 91 107 107 LEU LEU B . n B 1 92 THR 92 108 108 THR THR B . n B 1 93 PRO 93 109 109 PRO PRO B . n B 1 94 GLU 94 110 110 GLU GLU B . n B 1 95 GLN 95 111 111 GLN GLN B . n B 1 96 LYS 96 112 112 LYS LYS B . n B 1 97 LYS 97 113 113 LYS LYS B . n B 1 98 GLN 98 114 114 GLN GLN B . n B 1 99 PHE 99 115 115 PHE PHE B . n B 1 100 ASN 100 116 116 ASN ASN B . n B 1 101 ALA 101 117 117 ALA ALA B . n B 1 102 ASN 102 118 118 ASN ASN B . n B 1 103 PHE 103 119 119 PHE PHE B . n B 1 104 GLU 104 120 120 GLU GLU B . n B 1 105 LYS 105 121 121 LYS LYS B . n B 1 106 ARG 106 122 122 ARG ARG B . n B 1 107 LEU 107 123 123 LEU LEU B . n B 1 108 THR 108 124 124 THR THR B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Montreal-Kingston Bacterial Structural Genomics Initiative' _pdbx_SG_project.initial_of_center BSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CD 1 1 1 CD CD A . D 2 CD 1 2 2 CD CD A . E 2 CD 1 6 6 CD CD A . F 2 CD 1 8 8 CD CD A . G 2 CD 1 3 3 CD CD B . H 2 CD 1 4 4 CD CD B . I 2 CD 1 5 5 CD CD B . J 2 CD 1 7 7 CD CD B . K 2 CD 1 9 9 CD CD B . L 3 HOH 1 3 3 HOH HOH A . L 3 HOH 2 5 5 HOH HOH A . L 3 HOH 3 7 7 HOH HOH A . L 3 HOH 4 125 1 HOH HOH A . L 3 HOH 5 126 2 HOH HOH A . L 3 HOH 6 127 8 HOH HOH A . L 3 HOH 7 128 18 HOH HOH A . L 3 HOH 8 129 22 HOH HOH A . L 3 HOH 9 130 23 HOH HOH A . L 3 HOH 10 131 24 HOH HOH A . M 3 HOH 1 11 11 HOH HOH B . M 3 HOH 2 12 12 HOH HOH B . M 3 HOH 3 13 13 HOH HOH B . M 3 HOH 4 14 14 HOH HOH B . M 3 HOH 5 15 15 HOH HOH B . M 3 HOH 6 125 9 HOH HOH B . M 3 HOH 7 126 17 HOH HOH B . M 3 HOH 8 127 19 HOH HOH B . M 3 HOH 9 128 20 HOH HOH B . M 3 HOH 10 129 21 HOH HOH B . M 3 HOH 11 130 25 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 30 A MSE 46 ? MET SELENOMETHIONINE 2 A MSE 37 A MSE 53 ? MET SELENOMETHIONINE 3 A MSE 48 A MSE 64 ? MET SELENOMETHIONINE 4 A MSE 69 A MSE 85 ? MET SELENOMETHIONINE 5 A MSE 77 A MSE 93 ? MET SELENOMETHIONINE 6 A MSE 81 A MSE 97 ? MET SELENOMETHIONINE 7 B MSE 30 B MSE 46 ? MET SELENOMETHIONINE 8 B MSE 37 B MSE 53 ? MET SELENOMETHIONINE 9 B MSE 48 B MSE 64 ? MET SELENOMETHIONINE 10 B MSE 69 B MSE 85 ? MET SELENOMETHIONINE 11 B MSE 77 B MSE 93 ? MET SELENOMETHIONINE 12 B MSE 81 B MSE 97 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 4 'Structure model' 1 3 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.contact_author' 3 4 'Structure model' '_software.contact_author_email' 4 4 'Structure model' '_software.location' 5 4 'Structure model' '_software.name' 6 4 'Structure model' '_software.type' 7 4 'Structure model' '_software.version' 8 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 3.7331 -9.1382 18.7795 0.4228 0.2861 0.2157 -0.0007 -0.1578 0.0215 1.4814 3.5152 2.8360 -0.6501 1.1851 1.7868 0.6421 0.0557 -0.2202 -0.1774 -0.5093 -0.2583 0.3889 0.6448 -0.0175 'X-RAY DIFFRACTION' 2 ? refined 5.3584 -21.1245 -8.5423 0.9016 0.2331 0.2986 0.3600 -0.2481 -0.0699 4.2426 4.0424 3.6864 -2.3501 -2.8798 -0.1142 0.2004 -0.3003 -0.2428 -0.2776 -0.1772 0.3620 1.4045 0.4628 -0.0006 'X-RAY DIFFRACTION' 3 ? refined -5.5427 -21.1820 23.8740 0.9569 0.2291 0.3837 -0.3573 -0.2821 0.1098 3.3703 4.6611 2.6615 0.5639 -1.5896 1.1765 0.2926 0.3870 -0.4995 0.3272 -0.0050 -0.7368 1.3665 -0.0857 0.0034 'X-RAY DIFFRACTION' 4 ? refined -3.4845 -8.8404 -3.4959 0.4943 0.2806 0.2661 0.0372 -0.2040 0.0098 2.1199 4.1428 3.2002 1.2261 1.1718 -2.3527 0.7988 0.1758 -0.5366 0.1792 -0.1487 0.3841 -0.1309 -0.3986 0.0010 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? '(chain X and resid 79:115)' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? '(chain X and (resid 52:78 or resid 116:147))' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? '(chain C and (resid 52:78 or resid 116:147))' 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? '(chain C and resid 79:115)' # _phasing.method SAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHENIX 1.6_289 ? ? ? ? refinement ? ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 4 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 REFMAC 5.2.0019 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 7 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OD2 B ASP 74 ? ? 1_555 CD A CD 2 ? ? 2_554 1.93 2 1 OD2 A ASP 74 ? ? 1_555 CD B CD 5 ? ? 3_555 1.94 3 1 OD1 B ASP 74 ? ? 1_555 CD A CD 2 ? ? 2_554 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 30 ? ? -178.87 104.80 2 1 LEU A 34 ? ? -54.46 -134.51 3 1 THR A 35 ? ? -175.82 149.45 4 1 LEU A 58 ? ? -34.64 -38.59 5 1 LYS B 30 ? ? -168.21 79.60 6 1 LEU B 32 ? ? -150.85 -25.19 7 1 ASN B 33 ? ? 95.04 61.96 8 1 LEU B 34 ? ? -69.72 -125.13 9 1 THR B 35 ? ? -179.64 137.51 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 B _pdbx_validate_peptide_omega.auth_seq_id_1 31 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 LEU _pdbx_validate_peptide_omega.auth_asym_id_2 B _pdbx_validate_peptide_omega.auth_seq_id_2 32 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -149.00 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 41 ? CG ? A GLN 25 CG 2 1 Y 1 A GLN 41 ? CD ? A GLN 25 CD 3 1 Y 1 A GLN 41 ? OE1 ? A GLN 25 OE1 4 1 Y 1 A GLN 41 ? NE2 ? A GLN 25 NE2 5 1 Y 1 A GLU 44 ? CG ? A GLU 28 CG 6 1 Y 1 A GLU 44 ? CD ? A GLU 28 CD 7 1 Y 1 A GLU 44 ? OE1 ? A GLU 28 OE1 8 1 Y 1 A GLU 44 ? OE2 ? A GLU 28 OE2 9 1 Y 1 A LYS 47 ? CG ? A LYS 31 CG 10 1 Y 1 A LYS 47 ? CD ? A LYS 31 CD 11 1 Y 1 A LYS 47 ? CE ? A LYS 31 CE 12 1 Y 1 A LYS 47 ? NZ ? A LYS 31 NZ 13 1 Y 1 A ARG 50 ? CG ? A ARG 34 CG 14 1 Y 1 A ARG 50 ? CD ? A ARG 34 CD 15 1 Y 1 A ARG 50 ? NE ? A ARG 34 NE 16 1 Y 1 A ARG 50 ? CZ ? A ARG 34 CZ 17 1 Y 1 A ARG 50 ? NH1 ? A ARG 34 NH1 18 1 Y 1 A ARG 50 ? NH2 ? A ARG 34 NH2 19 1 Y 1 A ASP 51 ? CG ? A ASP 35 CG 20 1 Y 1 A ASP 51 ? OD1 ? A ASP 35 OD1 21 1 Y 1 A ASP 51 ? OD2 ? A ASP 35 OD2 22 1 Y 1 A LYS 54 ? CG ? A LYS 38 CG 23 1 Y 1 A LYS 54 ? CD ? A LYS 38 CD 24 1 Y 1 A LYS 54 ? CE ? A LYS 38 CE 25 1 Y 1 A LYS 54 ? NZ ? A LYS 38 NZ 26 1 Y 1 A GLU 87 ? CG ? A GLU 71 CG 27 1 Y 1 A GLU 87 ? CD ? A GLU 71 CD 28 1 Y 1 A GLU 87 ? OE1 ? A GLU 71 OE1 29 1 Y 1 A GLU 87 ? OE2 ? A GLU 71 OE2 30 1 Y 1 A ARG 89 ? CG ? A ARG 73 CG 31 1 Y 1 A ARG 89 ? CD ? A ARG 73 CD 32 1 Y 1 A ARG 89 ? NE ? A ARG 73 NE 33 1 Y 1 A ARG 89 ? CZ ? A ARG 73 CZ 34 1 Y 1 A ARG 89 ? NH1 ? A ARG 73 NH1 35 1 Y 1 A ARG 89 ? NH2 ? A ARG 73 NH2 36 1 Y 1 A ASN 118 ? CG ? A ASN 102 CG 37 1 Y 1 A ASN 118 ? OD1 ? A ASN 102 OD1 38 1 Y 1 A ASN 118 ? ND2 ? A ASN 102 ND2 39 1 Y 1 A LYS 121 ? CG ? A LYS 105 CG 40 1 Y 1 A LYS 121 ? CD ? A LYS 105 CD 41 1 Y 1 A LYS 121 ? CE ? A LYS 105 CE 42 1 Y 1 A LYS 121 ? NZ ? A LYS 105 NZ 43 1 Y 1 A ARG 122 ? CG ? A ARG 106 CG 44 1 Y 1 A ARG 122 ? CD ? A ARG 106 CD 45 1 Y 1 A ARG 122 ? NE ? A ARG 106 NE 46 1 Y 1 A ARG 122 ? CZ ? A ARG 106 CZ 47 1 Y 1 A ARG 122 ? NH1 ? A ARG 106 NH1 48 1 Y 1 A ARG 122 ? NH2 ? A ARG 106 NH2 49 1 Y 1 B ASP 31 ? CG ? B ASP 15 CG 50 1 Y 1 B ASP 31 ? OD1 ? B ASP 15 OD1 51 1 Y 1 B ASP 31 ? OD2 ? B ASP 15 OD2 52 1 Y 1 B GLU 44 ? CG ? B GLU 28 CG 53 1 Y 1 B GLU 44 ? CD ? B GLU 28 CD 54 1 Y 1 B GLU 44 ? OE1 ? B GLU 28 OE1 55 1 Y 1 B GLU 44 ? OE2 ? B GLU 28 OE2 56 1 Y 1 B LYS 47 ? CG ? B LYS 31 CG 57 1 Y 1 B LYS 47 ? CD ? B LYS 31 CD 58 1 Y 1 B LYS 47 ? CE ? B LYS 31 CE 59 1 Y 1 B LYS 47 ? NZ ? B LYS 31 NZ 60 1 Y 1 B ARG 50 ? CG ? B ARG 34 CG 61 1 Y 1 B ARG 50 ? CD ? B ARG 34 CD 62 1 Y 1 B ARG 50 ? NE ? B ARG 34 NE 63 1 Y 1 B ARG 50 ? CZ ? B ARG 34 CZ 64 1 Y 1 B ARG 50 ? NH1 ? B ARG 34 NH1 65 1 Y 1 B ARG 50 ? NH2 ? B ARG 34 NH2 66 1 Y 1 B ASP 51 ? CG ? B ASP 35 CG 67 1 Y 1 B ASP 51 ? OD1 ? B ASP 35 OD1 68 1 Y 1 B ASP 51 ? OD2 ? B ASP 35 OD2 69 1 Y 1 B GLN 52 ? CG ? B GLN 36 CG 70 1 Y 1 B GLN 52 ? CD ? B GLN 36 CD 71 1 Y 1 B GLN 52 ? OE1 ? B GLN 36 OE1 72 1 Y 1 B GLN 52 ? NE2 ? B GLN 36 NE2 73 1 Y 1 B LYS 54 ? CG ? B LYS 38 CG 74 1 Y 1 B LYS 54 ? CD ? B LYS 38 CD 75 1 Y 1 B LYS 54 ? CE ? B LYS 38 CE 76 1 Y 1 B LYS 54 ? NZ ? B LYS 38 NZ 77 1 Y 1 B ARG 55 ? CG ? B ARG 39 CG 78 1 Y 1 B ARG 55 ? CD ? B ARG 39 CD 79 1 Y 1 B ARG 55 ? NE ? B ARG 39 NE 80 1 Y 1 B ARG 55 ? CZ ? B ARG 39 CZ 81 1 Y 1 B ARG 55 ? NH1 ? B ARG 39 NH1 82 1 Y 1 B ARG 55 ? NH2 ? B ARG 39 NH2 83 1 Y 1 B GLN 88 ? CG ? B GLN 72 CG 84 1 Y 1 B GLN 88 ? CD ? B GLN 72 CD 85 1 Y 1 B GLN 88 ? OE1 ? B GLN 72 OE1 86 1 Y 1 B GLN 88 ? NE2 ? B GLN 72 NE2 87 1 Y 1 B ARG 89 ? CG ? B ARG 73 CG 88 1 Y 1 B ARG 89 ? CD ? B ARG 73 CD 89 1 Y 1 B ARG 89 ? NE ? B ARG 73 NE 90 1 Y 1 B ARG 89 ? CZ ? B ARG 73 CZ 91 1 Y 1 B ARG 89 ? NH1 ? B ARG 73 NH1 92 1 Y 1 B ARG 89 ? NH2 ? B ARG 73 NH2 93 1 Y 1 B LYS 113 ? CG ? B LYS 97 CG 94 1 Y 1 B LYS 113 ? CD ? B LYS 97 CD 95 1 Y 1 B LYS 113 ? CE ? B LYS 97 CE 96 1 Y 1 B LYS 113 ? NZ ? B LYS 97 NZ 97 1 Y 1 B ASN 118 ? CG ? B ASN 102 CG 98 1 Y 1 B ASN 118 ? OD1 ? B ASN 102 OD1 99 1 Y 1 B ASN 118 ? ND2 ? B ASN 102 ND2 100 1 Y 1 B GLU 120 ? CG ? B GLU 104 CG 101 1 Y 1 B GLU 120 ? CD ? B GLU 104 CD 102 1 Y 1 B GLU 120 ? OE1 ? B GLU 104 OE1 103 1 Y 1 B GLU 120 ? OE2 ? B GLU 104 OE2 104 1 Y 1 B LYS 121 ? CG ? B LYS 105 CG 105 1 Y 1 B LYS 121 ? CD ? B LYS 105 CD 106 1 Y 1 B LYS 121 ? CE ? B LYS 105 CE 107 1 Y 1 B LYS 121 ? NZ ? B LYS 105 NZ 108 1 Y 1 B ARG 122 ? CG ? B ARG 106 CG 109 1 Y 1 B ARG 122 ? CD ? B ARG 106 CD 110 1 Y 1 B ARG 122 ? NE ? B ARG 106 NE 111 1 Y 1 B ARG 122 ? CZ ? B ARG 106 CZ 112 1 Y 1 B ARG 122 ? NH1 ? B ARG 106 NH1 113 1 Y 1 B ARG 122 ? NH2 ? B ARG 106 NH2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 17 ? A MSE 1 2 1 Y 1 A GLY 18 ? A GLY 2 3 1 Y 1 A SER 19 ? A SER 3 4 1 Y 1 A SER 20 ? A SER 4 5 1 Y 1 A HIS 21 ? A HIS 5 6 1 Y 1 A HIS 22 ? A HIS 6 7 1 Y 1 A HIS 23 ? A HIS 7 8 1 Y 1 A HIS 24 ? A HIS 8 9 1 Y 1 A HIS 25 ? A HIS 9 10 1 Y 1 A HIS 26 ? A HIS 10 11 1 Y 1 A GLY 27 ? A GLY 11 12 1 Y 1 A SER 28 ? A SER 12 13 1 Y 1 B MSE 17 ? B MSE 1 14 1 Y 1 B GLY 18 ? B GLY 2 15 1 Y 1 B SER 19 ? B SER 3 16 1 Y 1 B SER 20 ? B SER 4 17 1 Y 1 B HIS 21 ? B HIS 5 18 1 Y 1 B HIS 22 ? B HIS 6 19 1 Y 1 B HIS 23 ? B HIS 7 20 1 Y 1 B HIS 24 ? B HIS 8 21 1 Y 1 B HIS 25 ? B HIS 9 22 1 Y 1 B HIS 26 ? B HIS 10 23 1 Y 1 B GLY 27 ? B GLY 11 24 1 Y 1 B SER 28 ? B SER 12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CADMIUM ION' CD 3 water HOH #