HEADER CHAPERONE 23-JUL-10 3O39 TITLE CRYSTAL STRUCTURE OF SPY COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC PROTEIN RELATED TO SPHEROBLAST FORMATION; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 52-147; COMPND 5 SYNONYM: SPHEROPLAST PROTEIN Y; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 155864; SOURCE 4 STRAIN: O157:H7 EDL933; SOURCE 5 GENE: ECS2449, SPY, Z2775; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS ALPHA-HELICAL, STRUCTURAL GENOMICS, MONTREAL-KINGSTON BACTERIAL KEYWDS 2 STRUCTURAL GENOMICS INITIATIVE, BSGI, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.RUANE,R.SHI,M.CYGLER,MONTREAL-KINGSTON BACTERIAL STRUCTURAL AUTHOR 2 GENOMICS INITIATIVE (BSGI) REVDAT 5 17-JUL-19 3O39 1 REMARK LINK REVDAT 4 08-NOV-17 3O39 1 REMARK REVDAT 3 23-MAR-11 3O39 1 JRNL REVDAT 2 23-FEB-11 3O39 1 JRNL REVDAT 1 16-FEB-11 3O39 0 JRNL AUTH S.QUAN,P.KOLDEWEY,T.TAPLEY,N.KIRSCH,K.M.RUANE,J.PFIZENMAIER, JRNL AUTH 2 R.SHI,S.HOFMANN,L.FOIT,G.REN,U.JAKOB,Z.XU,M.CYGLER, JRNL AUTH 3 J.C.BARDWELL JRNL TITL GENETIC SELECTION DESIGNED TO STABILIZE PROTEINS UNCOVERS A JRNL TITL 2 CHAPERONE CALLED SPY. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 262 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21317898 JRNL DOI 10.1038/NSMB.2016 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6_289 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 19513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.243 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0686 - 4.9695 0.99 2771 133 0.2706 0.3147 REMARK 3 2 4.9695 - 3.9453 1.00 2738 167 0.1989 0.2119 REMARK 3 3 3.9453 - 3.4468 0.97 2627 142 0.2036 0.2546 REMARK 3 4 3.4468 - 3.1318 1.00 2772 151 0.2257 0.2748 REMARK 3 5 3.1318 - 2.9074 1.00 2766 152 0.2421 0.2853 REMARK 3 6 2.9074 - 2.7360 0.96 2681 120 0.2621 0.3067 REMARK 3 7 2.7360 - 2.5990 0.79 2209 84 0.2708 0.2854 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 55.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56390 REMARK 3 B22 (A**2) : 0.56390 REMARK 3 B33 (A**2) : -1.12770 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1542 REMARK 3 ANGLE : 1.324 2070 REMARK 3 CHIRALITY : 0.077 232 REMARK 3 PLANARITY : 0.005 274 REMARK 3 DIHEDRAL : 20.732 602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN X AND RESID 79:115) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7331 -9.1382 18.7795 REMARK 3 T TENSOR REMARK 3 T11: 0.4228 T22: 0.2861 REMARK 3 T33: 0.2157 T12: -0.0007 REMARK 3 T13: -0.1578 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.4814 L22: 3.5152 REMARK 3 L33: 2.8360 L12: -0.6501 REMARK 3 L13: 1.1851 L23: 1.7868 REMARK 3 S TENSOR REMARK 3 S11: 0.6421 S12: 0.0557 S13: -0.2202 REMARK 3 S21: -0.1774 S22: -0.5093 S23: -0.2583 REMARK 3 S31: 0.3889 S32: 0.6448 S33: -0.0175 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN X AND (RESID 52:78 OR RESID 116:147)) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3584 -21.1245 -8.5423 REMARK 3 T TENSOR REMARK 3 T11: 0.9016 T22: 0.2331 REMARK 3 T33: 0.2986 T12: 0.3600 REMARK 3 T13: -0.2481 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 4.2426 L22: 4.0424 REMARK 3 L33: 3.6864 L12: -2.3501 REMARK 3 L13: -2.8798 L23: -0.1142 REMARK 3 S TENSOR REMARK 3 S11: 0.2004 S12: -0.3003 S13: -0.2428 REMARK 3 S21: -0.2776 S22: -0.1772 S23: 0.3620 REMARK 3 S31: 1.4045 S32: 0.4628 S33: -0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND (RESID 52:78 OR RESID 116:147)) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5427 -21.1820 23.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.9569 T22: 0.2291 REMARK 3 T33: 0.3837 T12: -0.3573 REMARK 3 T13: -0.2821 T23: 0.1098 REMARK 3 L TENSOR REMARK 3 L11: 3.3703 L22: 4.6611 REMARK 3 L33: 2.6615 L12: 0.5639 REMARK 3 L13: -1.5896 L23: 1.1765 REMARK 3 S TENSOR REMARK 3 S11: 0.2926 S12: 0.3870 S13: -0.4995 REMARK 3 S21: 0.3272 S22: -0.0050 S23: -0.7368 REMARK 3 S31: 1.3665 S32: -0.0857 S33: 0.0034 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN C AND RESID 79:115) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4845 -8.8404 -3.4959 REMARK 3 T TENSOR REMARK 3 T11: 0.4943 T22: 0.2806 REMARK 3 T33: 0.2661 T12: 0.0372 REMARK 3 T13: -0.2040 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.1199 L22: 4.1428 REMARK 3 L33: 3.2002 L12: 1.2261 REMARK 3 L13: 1.1718 L23: -2.3527 REMARK 3 S TENSOR REMARK 3 S11: 0.7988 S12: 0.1758 S13: -0.5366 REMARK 3 S21: 0.1792 S22: -0.1487 S23: 0.3841 REMARK 3 S31: -0.1309 S32: -0.3986 S33: 0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19671 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11600 REMARK 200 FOR THE DATA SET : 37.0700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M CDCL2, 2.4M AMMONIUM SULPHATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.85400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.42700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.85400 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.42700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 SER A 20 REMARK 465 HIS A 21 REMARK 465 HIS A 22 REMARK 465 HIS A 23 REMARK 465 HIS A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 MSE B 17 REMARK 465 GLY B 18 REMARK 465 SER B 19 REMARK 465 SER B 20 REMARK 465 HIS B 21 REMARK 465 HIS B 22 REMARK 465 HIS B 23 REMARK 465 HIS B 24 REMARK 465 HIS B 25 REMARK 465 HIS B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 41 CG CD OE1 NE2 REMARK 470 GLU A 44 CG CD OE1 OE2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 51 CG OD1 OD2 REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 118 CG OD1 ND2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 ARG B 50 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 51 CG OD1 OD2 REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 88 CG CD OE1 NE2 REMARK 470 ARG B 89 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 ASN B 118 CG OD1 ND2 REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 74 CD CD A 2 2554 1.93 REMARK 500 OD2 ASP A 74 CD CD B 5 3555 1.94 REMARK 500 OD1 ASP B 74 CD CD A 2 2554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 30 104.80 -178.87 REMARK 500 LEU A 34 -134.51 -54.46 REMARK 500 THR A 35 149.45 -175.82 REMARK 500 LEU A 58 -38.59 -34.64 REMARK 500 LYS B 30 79.60 -168.21 REMARK 500 LEU B 32 -25.19 -150.85 REMARK 500 ASN B 33 61.96 95.04 REMARK 500 LEU B 34 -125.13 -69.72 REMARK 500 THR B 35 137.51 -179.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 31 LEU B 32 -149.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SPY_ECO57 RELATED DB: TARGETDB DBREF 3O39 A 29 124 UNP Q8XDZ4 Q8XDZ4_ECO57 52 147 DBREF 3O39 B 29 124 UNP Q8XDZ4 Q8XDZ4_ECO57 52 147 SEQADV 3O39 MSE A 17 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 GLY A 18 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 SER A 19 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 SER A 20 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS A 21 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS A 22 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS A 23 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS A 24 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS A 25 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS A 26 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 GLY A 27 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 SER A 28 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 MSE B 17 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 GLY B 18 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 SER B 19 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 SER B 20 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS B 21 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS B 22 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS B 23 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS B 24 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS B 25 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 HIS B 26 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 GLY B 27 UNP Q8XDZ4 EXPRESSION TAG SEQADV 3O39 SER B 28 UNP Q8XDZ4 EXPRESSION TAG SEQRES 1 A 108 MSE GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER PHE SEQRES 2 A 108 LYS ASP LEU ASN LEU THR ASP ALA GLN LYS GLN GLN ILE SEQRES 3 A 108 ARG GLU ILE MSE LYS GLY GLN ARG ASP GLN MSE LYS ARG SEQRES 4 A 108 PRO PRO LEU GLU GLU ARG ARG ALA MSE HIS ASP ILE ILE SEQRES 5 A 108 ALA SER ASP THR PHE ASP LYS ALA LYS ALA GLU ALA GLN SEQRES 6 A 108 ILE ALA LYS MSE GLU GLU GLN ARG LYS ALA ASN MSE LEU SEQRES 7 A 108 ALA HIS MSE GLU THR GLN ASN LYS ILE TYR ASN ILE LEU SEQRES 8 A 108 THR PRO GLU GLN LYS LYS GLN PHE ASN ALA ASN PHE GLU SEQRES 9 A 108 LYS ARG LEU THR SEQRES 1 B 108 MSE GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER PHE SEQRES 2 B 108 LYS ASP LEU ASN LEU THR ASP ALA GLN LYS GLN GLN ILE SEQRES 3 B 108 ARG GLU ILE MSE LYS GLY GLN ARG ASP GLN MSE LYS ARG SEQRES 4 B 108 PRO PRO LEU GLU GLU ARG ARG ALA MSE HIS ASP ILE ILE SEQRES 5 B 108 ALA SER ASP THR PHE ASP LYS ALA LYS ALA GLU ALA GLN SEQRES 6 B 108 ILE ALA LYS MSE GLU GLU GLN ARG LYS ALA ASN MSE LEU SEQRES 7 B 108 ALA HIS MSE GLU THR GLN ASN LYS ILE TYR ASN ILE LEU SEQRES 8 B 108 THR PRO GLU GLN LYS LYS GLN PHE ASN ALA ASN PHE GLU SEQRES 9 B 108 LYS ARG LEU THR MODRES 3O39 MSE A 46 MET SELENOMETHIONINE MODRES 3O39 MSE A 53 MET SELENOMETHIONINE MODRES 3O39 MSE A 64 MET SELENOMETHIONINE MODRES 3O39 MSE A 85 MET SELENOMETHIONINE MODRES 3O39 MSE A 93 MET SELENOMETHIONINE MODRES 3O39 MSE A 97 MET SELENOMETHIONINE MODRES 3O39 MSE B 46 MET SELENOMETHIONINE MODRES 3O39 MSE B 53 MET SELENOMETHIONINE MODRES 3O39 MSE B 64 MET SELENOMETHIONINE MODRES 3O39 MSE B 85 MET SELENOMETHIONINE MODRES 3O39 MSE B 93 MET SELENOMETHIONINE MODRES 3O39 MSE B 97 MET SELENOMETHIONINE HET MSE A 46 8 HET MSE A 53 8 HET MSE A 64 13 HET MSE A 85 13 HET MSE A 93 13 HET MSE A 97 8 HET MSE B 46 8 HET MSE B 53 8 HET MSE B 64 8 HET MSE B 85 13 HET MSE B 93 13 HET MSE B 97 8 HET CD A 1 1 HET CD A 2 1 HET CD A 6 1 HET CD A 8 1 HET CD B 3 1 HET CD B 4 1 HET CD B 5 1 HET CD B 7 1 HET CD B 9 1 HETNAM MSE SELENOMETHIONINE HETNAM CD CADMIUM ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 CD 9(CD 2+) FORMUL 12 HOH *21(H2 O) HELIX 1 1 THR A 35 GLY A 48 1 14 HELIX 2 2 PRO A 57 ALA A 69 1 13 HELIX 3 3 ASP A 74 MSE A 85 1 12 HELIX 4 4 MSE A 85 ASN A 105 1 21 HELIX 5 5 THR A 108 ARG A 122 1 15 HELIX 6 6 THR B 35 ASP B 51 1 17 HELIX 7 7 PRO B 57 ALA B 69 1 13 HELIX 8 8 ASP B 74 ASN B 105 1 32 HELIX 9 9 THR B 108 LEU B 123 1 16 LINK C ILE A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N LYS A 47 1555 1555 1.33 LINK C GLN A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N LYS A 54 1555 1555 1.33 LINK C ALA A 63 N MSE A 64 1555 1555 1.32 LINK C MSE A 64 N HIS A 65 1555 1555 1.32 LINK C LYS A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N GLU A 86 1555 1555 1.32 LINK C ASN A 92 N MSE A 93 1555 1555 1.34 LINK C MSE A 93 N LEU A 94 1555 1555 1.33 LINK C HIS A 96 N MSE A 97 1555 1555 1.32 LINK C MSE A 97 N GLU A 98 1555 1555 1.33 LINK C ILE B 45 N MSE B 46 1555 1555 1.33 LINK C MSE B 46 N LYS B 47 1555 1555 1.33 LINK C GLN B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N LYS B 54 1555 1555 1.33 LINK C ALA B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N HIS B 65 1555 1555 1.33 LINK C LYS B 84 N MSE B 85 1555 1555 1.33 LINK C MSE B 85 N GLU B 86 1555 1555 1.33 LINK C ASN B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N LEU B 94 1555 1555 1.33 LINK C HIS B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N GLU B 98 1555 1555 1.33 LINK OE2 GLU A 86 CD CD B 3 1555 1555 2.36 LINK OD2 ASP A 36 CD CD A 6 1555 1555 2.59 LINK OD1 ASP A 66 CD CD A 1 1555 1555 2.64 SITE 1 AC1 3 ASP A 66 CD B 4 ASP B 66 SITE 1 AC2 4 ASP A 74 CD B 5 ASP B 74 LYS B 77 SITE 1 AC3 1 ASP A 36 SITE 1 AC4 3 HOH A 130 HOH A 131 THR B 72 SITE 1 AC5 3 HOH A 7 GLU A 86 GLU B 86 SITE 1 AC6 4 CD A 1 ARG A 62 ASP A 66 ASP B 66 SITE 1 AC7 3 CD A 2 ASP A 74 ASP B 74 SITE 1 AC8 2 ASP B 36 GLN B 41 SITE 1 AC9 1 HOH B 130 CRYST1 68.971 68.971 124.281 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014499 0.008371 0.000000 0.00000 SCALE2 0.000000 0.016742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008046 0.00000