HEADER VIRAL PROTEIN 26-JUL-10 3O43 TITLE COMPLEX OF AN ALPHA/BETA-PEPTIDE BASED ON THE GP41 CHR DOMAIN BOUND TO TITLE 2 GP41-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GP41-5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALPHA/BETA-PEPTIDE DERIVED FROM GP41 CHR DOMAIN SEQUENCE; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTIFICIAL GENE; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 OTHER_DETAILS: SYNTHETIC PEPTIDE KEYWDS HIV FUSION INHIBITOR, MIXED ALPHA-PEPTIDE/BETA-PEPTIDE BACKBONE, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.S.HORNE,L.M.JOHNSON,S.H.GELLMAN REVDAT 4 15-NOV-23 3O43 1 ATOM REVDAT 3 06-SEP-23 3O43 1 REMARK LINK REVDAT 2 23-NOV-11 3O43 1 HEADER REVDAT 1 27-JUL-11 3O43 0 JRNL AUTH L.M.JOHNSON,W.S.HORNE,S.H.GELLMAN JRNL TITL BROAD DISTRIBUTION OF ENERGETICALLY IMPORTANT CONTACTS JRNL TITL 2 ACROSS AN EXTENDED PROTEIN INTERFACE. JRNL REF J.AM.CHEM.SOC. V. 133 10038 2011 JRNL REFN ISSN 0002-7863 JRNL PMID 21644542 JRNL DOI 10.1021/JA203358T REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 6930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 355 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 492 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 29 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.85000 REMARK 3 B22 (A**2) : -1.13000 REMARK 3 B33 (A**2) : -0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.426 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.290 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 30.716 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1909 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1284 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2578 ; 1.404 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3150 ; 0.912 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 218 ; 5.730 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;35.987 ;26.392 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 328 ;17.648 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;19.968 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2101 ; 0.004 ; 0.019 REMARK 3 GENERAL PLANES OTHERS (A): 339 ; 0.001 ; 0.019 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1165 ; 1.461 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 503 ; 0.313 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1846 ; 2.809 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 744 ; 4.821 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 732 ; 8.121 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): -2.8340 -9.8330 9.5310 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.1060 REMARK 3 T33: 0.0811 T12: 0.0061 REMARK 3 T13: 0.0040 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 1.8734 L22: 3.3546 REMARK 3 L33: 3.3414 L12: 0.1776 REMARK 3 L13: 0.0992 L23: 1.7736 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: 0.1150 S13: -0.0225 REMARK 3 S21: -0.1433 S22: 0.0025 S23: -0.0803 REMARK 3 S31: -0.0769 S32: 0.0386 S33: 0.0113 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 35 REMARK 3 ORIGIN FOR THE GROUP (A): -16.2960 -13.3160 11.0060 REMARK 3 T TENSOR REMARK 3 T11: 0.0567 T22: 0.3371 REMARK 3 T33: 0.2276 T12: -0.0339 REMARK 3 T13: 0.0112 T23: -0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.5756 L22: 12.2828 REMARK 3 L33: 3.5905 L12: 1.8579 REMARK 3 L13: 0.1392 L23: 2.8835 REMARK 3 S TENSOR REMARK 3 S11: 0.0195 S12: -0.0888 S13: -0.2283 REMARK 3 S21: 0.4569 S22: -0.2739 S23: -0.1122 REMARK 3 S31: 0.1601 S32: -0.3153 S33: 0.2543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7321 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3O3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M MGCL2, 0.05 M TRIS PH 8.5, 10% REMARK 280 W/V PEG 4000 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.90400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.92000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.81050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.92000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.90400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.81050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ACE B 0 REMARK 465 B3T B 1 REMARK 465 XPC B 36 REMARK 465 GLU B 37 REMARK 465 LEU B 38 REMARK 465 NH2 B 39 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 69 CD OE1 OE2 REMARK 470 LYS A 151 CD CE NZ REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 B3E B 12 CD CE OF2 OF1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 29 OD1 ASP A 47 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 H SER A 118 HG SER A 140 3555 1.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 XCP B 5 C - N - CA ANGL. DEV. = 19.1 DEGREES REMARK 500 B3E B 29 CA - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 147.75 -179.70 REMARK 500 SER A 121 113.86 123.70 REMARK 500 ILE A 197 -69.12 -94.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 4 XCP B 5 142.24 REMARK 500 ASP B 7 XPC B 8 138.54 REMARK 500 B3E B 12 TYR B 13 141.20 REMARK 500 ALA B 14 XCP B 15 138.06 REMARK 500 GLU B 18 XCP B 19 137.50 REMARK 500 ILE B 21 XPC B 22 137.81 REMARK 500 B3E B 26 GLN B 27 144.22 REMARK 500 B3E B 29 LYS B 30 143.62 REMARK 500 GLU B 32 XCP B 33 138.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 B3E B 12 -19.78 REMARK 500 B3E B 26 -16.85 REMARK 500 B3E B 29 -18.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GOL A 200 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 199 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 40 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O3X RELATED DB: PDB REMARK 900 RELATED ID: 3O3Y RELATED DB: PDB REMARK 900 RELATED ID: 3O3Z RELATED DB: PDB REMARK 900 RELATED ID: 3O40 RELATED DB: PDB REMARK 900 RELATED ID: 3O42 RELATED DB: PDB DBREF 3O43 A 1 198 PDB 3O43 3O43 1 198 DBREF 3O43 B 0 39 PDB 3O43 3O43 0 39 SEQRES 1 A 198 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA SEQRES 2 A 198 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP SEQRES 3 A 198 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU SER GLY GLY SEQRES 4 A 198 SER GLY GLY TRP MET GLU TRP ASP ARG GLU ILE ASN ASN SEQRES 5 A 198 TYR THR SER LEU ILE HIS SER LEU ILE GLU GLU SER GLN SEQRES 6 A 198 ASN GLN GLN GLU LYS ASN GLU GLN GLU LEU LEU GLY GLY SEQRES 7 A 198 SER GLY GLY SER GLY ILE VAL GLN GLN GLN ASN ASN LEU SEQRES 8 A 198 LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU SEQRES 9 A 198 THR VAL TRP GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU SEQRES 10 A 198 SER GLY GLY SER GLY GLY TRP MET GLU TRP ASP ARG GLU SEQRES 11 A 198 ILE ASN ASN TYR THR SER LEU ILE HIS SER LEU ILE GLU SEQRES 12 A 198 GLU SER GLN ASN GLN GLN GLU LYS ASN GLU GLN GLU LEU SEQRES 13 A 198 LEU GLY GLY SER GLY GLY SER GLY ILE VAL GLN GLN GLN SEQRES 14 A 198 ASN ASN LEU LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU SEQRES 15 A 198 LEU GLN LEU THR VAL TRP GLY ILE LYS GLN LEU GLN ALA SEQRES 16 A 198 ARG ILE LEU SEQRES 1 B 40 ACE B3T THR TRP GLU XCP TRP ASP XPC ALA ILE ALA B3E SEQRES 2 B 40 TYR ALA XCP ARG ILE GLU XCP LEU ILE XPC ALA ALA GLN SEQRES 3 B 40 B3E GLN GLN B3E LYS ASN GLU XCP ALA LEU XPC GLU LEU SEQRES 4 B 40 NH2 MODRES 3O43 B3E B 12 GLU (3S)-3-AMINOHEXANEDIOIC ACID MODRES 3O43 B3E B 26 GLU (3S)-3-AMINOHEXANEDIOIC ACID MODRES 3O43 B3E B 29 GLU (3S)-3-AMINOHEXANEDIOIC ACID HET XCP B 5 17 HET XPC B 8 16 HET B3E B 12 12 HET XCP B 15 17 HET XCP B 19 17 HET XPC B 22 16 HET B3E B 26 18 HET B3E B 29 18 HET XCP B 33 17 HET GOL A 199 14 HET GOL A 200 10 HET GOL A 201 14 HET GOL B 40 14 HETNAM XCP (1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID HETNAM XPC (3S,4R)-4-AMINOPYRROLIDINE-3-CARBOXYLIC ACID HETNAM B3E (3S)-3-AMINOHEXANEDIOIC ACID HETNAM GOL GLYCEROL HETSYN XPC (3R,4S)-3-AMINOPYRROLIDINE-4-CARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 XCP 4(C6 H11 N O2) FORMUL 2 XPC 2(C5 H10 N2 O2) FORMUL 2 B3E 3(C6 H11 N O4) FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *29(H2 O) HELIX 1 1 SER A 1 LEU A 36 1 36 HELIX 2 2 GLY A 42 GLU A 74 1 33 HELIX 3 3 GLY A 81 LEU A 117 1 37 HELIX 4 4 SER A 121 GLU A 155 1 35 HELIX 5 5 GLY A 162 LEU A 198 1 37 HELIX 6 6 THR B 2 LEU B 35 1 34 LINK C GLU B 4 N XCP B 5 1555 1555 1.33 LINK C XCP B 5 N TRP B 6 1555 1555 1.32 LINK C ASP B 7 N XPC B 8 1555 1555 1.33 LINK C XPC B 8 N ALA B 9 1555 1555 1.33 LINK C ALA B 11 N B3E B 12 1555 1555 1.33 LINK C B3E B 12 N TYR B 13 1555 1555 1.34 LINK C ALA B 14 N XCP B 15 1555 1555 1.33 LINK C XCP B 15 N ARG B 16 1555 1555 1.32 LINK C GLU B 18 N XCP B 19 1555 1555 1.32 LINK C XCP B 19 N LEU B 20 1555 1555 1.33 LINK C ILE B 21 N XPC B 22 1555 1555 1.32 LINK C XPC B 22 N ALA B 23 1555 1555 1.34 LINK C GLN B 25 N B3E B 26 1555 1555 1.34 LINK C B3E B 26 N GLN B 27 1555 1555 1.33 LINK C GLN B 28 N B3E B 29 1555 1555 1.34 LINK C B3E B 29 N LYS B 30 1555 1555 1.33 LINK C GLU B 32 N XCP B 33 1555 1555 1.33 LINK C XCP B 33 N ALA B 34 1555 1555 1.34 SITE 1 AC1 8 LEU A 117 SER A 118 SER A 121 GLY A 122 SITE 2 AC1 8 SER A 140 GLU A 143 GLU A 144 ARG A 196 SITE 1 AC2 2 GLY A 123 TRP A 127 SITE 1 AC3 2 GLU A 72 GLN A 73 SITE 1 AC4 3 GLN A 194 TRP B 3 ASP B 7 CRYST1 47.808 57.621 101.840 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020917 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009819 0.00000