data_3O46 # _entry.id 3O46 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3O46 RCSB RCSB060642 WWPDB D_1000060642 # _pdbx_database_status.entry_id 3O46 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-07-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nedyalkova, L.' 1 'Tong, Y.' 2 'Tempel, W.' 3 'Zhong, N.' 4 'Guan, X.' 5 'Landry, R.' 6 'Arrowsmith, C.H.' 7 'Edwards, A.M.' 8 'Bountra, C.' 9 'Weigelt, J.' 10 'Bochkarev, A.' 11 'Park, H.' 12 'Structural Genomics Consortium (SGC)' 13 # _citation.id primary _citation.title 'Crystal structure of the PDZ domain of MPP7' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nedyalkova, L.' 1 primary 'Tong, Y.' 2 primary 'Tempel, W.' 3 primary 'Zhong, N.' 4 primary 'Guan, X.' 5 primary 'Landry, R.' 6 primary 'Arrowsmith, C.H.' 7 primary 'Edwards, A.M.' 8 primary 'Bountra, C.' 9 primary 'Weigelt, J.' 10 primary 'Bochkarev, A.' 11 primary 'Park, H.' 12 # _cell.entry_id 3O46 _cell.length_a 66.616 _cell.length_b 66.616 _cell.length_c 46.475 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3O46 _symmetry.space_group_name_H-M 'P 63' _symmetry.Int_Tables_number 173 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MAGUK p55 subfamily member 7' 10102.445 1 ? ? 'PDZ Domain (UNP residues 135-225)' ? 2 non-polymer syn 'UNKNOWN ATOM OR ION' ? 13 ? ? ? ? 3 water nat water 18.015 69 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSDSVKIIRLVKNREPLGATIKKDEQTGAIIVARI(MSE)RGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQS QGAITFKIIPGSKEETP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSDSVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAI TFKIIPGSKEETP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ASP n 1 4 SER n 1 5 VAL n 1 6 LYS n 1 7 ILE n 1 8 ILE n 1 9 ARG n 1 10 LEU n 1 11 VAL n 1 12 LYS n 1 13 ASN n 1 14 ARG n 1 15 GLU n 1 16 PRO n 1 17 LEU n 1 18 GLY n 1 19 ALA n 1 20 THR n 1 21 ILE n 1 22 LYS n 1 23 LYS n 1 24 ASP n 1 25 GLU n 1 26 GLN n 1 27 THR n 1 28 GLY n 1 29 ALA n 1 30 ILE n 1 31 ILE n 1 32 VAL n 1 33 ALA n 1 34 ARG n 1 35 ILE n 1 36 MSE n 1 37 ARG n 1 38 GLY n 1 39 GLY n 1 40 ALA n 1 41 ALA n 1 42 ASP n 1 43 ARG n 1 44 SER n 1 45 GLY n 1 46 LEU n 1 47 ILE n 1 48 HIS n 1 49 VAL n 1 50 GLY n 1 51 ASP n 1 52 GLU n 1 53 LEU n 1 54 ARG n 1 55 GLU n 1 56 VAL n 1 57 ASN n 1 58 GLY n 1 59 ILE n 1 60 PRO n 1 61 VAL n 1 62 GLU n 1 63 ASP n 1 64 LYS n 1 65 ARG n 1 66 PRO n 1 67 GLU n 1 68 GLU n 1 69 ILE n 1 70 ILE n 1 71 GLN n 1 72 ILE n 1 73 LEU n 1 74 ALA n 1 75 GLN n 1 76 SER n 1 77 GLN n 1 78 GLY n 1 79 ALA n 1 80 ILE n 1 81 THR n 1 82 PHE n 1 83 LYS n 1 84 ILE n 1 85 ILE n 1 86 PRO n 1 87 GLY n 1 88 SER n 1 89 LYS n 1 90 GLU n 1 91 GLU n 1 92 THR n 1 93 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MPP7 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21-V2R-pRARE2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28a-LIC _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MPP7_HUMAN _struct_ref.pdbx_db_accession Q5T2T1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DSVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF KIIPGSKEETP ; _struct_ref.pdbx_align_begin 135 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3O46 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 93 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5T2T1 _struct_ref_seq.db_align_beg 135 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 225 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 135 _struct_ref_seq.pdbx_auth_seq_align_end 225 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3O46 GLY A 1 ? UNP Q5T2T1 ? ? 'EXPRESSION TAG' 133 1 1 3O46 SER A 2 ? UNP Q5T2T1 ? ? 'EXPRESSION TAG' 134 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 UNX non-polymer . 'UNKNOWN ATOM OR ION' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3O46 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 58.26 _exptl_crystal.density_Matthews 2.95 _exptl_crystal.density_meas ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 291 _exptl_crystal_grow.pdbx_details '30% PEG-1500, 0.2M sodium chloride, 0.1M HEPES, pH 7.5, vapor diffusion, sitting drop, temperature 291K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 2 100 ? 1 1 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 315' 2010-06-17 ? 2 'IMAGE PLATE' 'RIGAKU RAXIS' 2010-06-13 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.monochromator _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.pdbx_scattering_type 2 'SINGLE WAVELENGTH' ? 1 M x-ray 1 'SINGLE WAVELENGTH' ? 1 M x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97904 1.0 2 1.5418 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_wavelength_list _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline 1 SYNCHROTRON 'APS BEAMLINE 19-ID' 0.97904 ? APS 19-ID 2 'ROTATING ANODE' 'RIGAKU FR-E DW' 1.5418 ? ? ? # _reflns.entry_id 3O46 _reflns.d_resolution_high 1.300 _reflns.d_resolution_low 40.000 _reflns.number_obs 28982 _reflns.pdbx_Rmerge_I_obs 0.041 _reflns.pdbx_netI_over_sigmaI 14.600 _reflns.pdbx_chi_squared 1.566 _reflns.pdbx_redundancy 5.600 _reflns.percent_possible_obs 99.800 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 2,1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.300 1.320 ? ? ? 0.751 ? ? 1.660 5.500 ? 2847 100.000 ? 1 1.320 1.350 ? ? ? 0.663 ? ? 1.599 5.500 ? 2815 99.800 ? 2 1.350 1.370 ? ? ? 0.522 ? ? 1.610 5.500 ? 2882 99.900 ? 3 1.370 1.400 ? ? ? 0.421 ? ? 1.514 5.500 ? 2844 100.000 ? 4 1.400 1.430 ? ? ? 0.369 ? ? 1.491 5.500 ? 2821 99.900 ? 5 1.430 1.460 ? ? ? 0.320 ? ? 1.453 5.600 ? 2850 99.900 ? 6 1.460 1.500 ? ? ? 0.231 ? ? 1.410 5.600 ? 2899 99.900 ? 7 1.500 1.540 ? ? ? 0.189 ? ? 1.430 5.600 ? 2812 100.000 ? 8 1.540 1.590 ? ? ? 0.159 ? ? 1.419 5.600 ? 2852 100.000 ? 9 1.590 1.640 ? ? ? 0.128 ? ? 1.389 5.600 ? 2801 100.000 ? 10 1.640 1.700 ? ? ? 0.101 ? ? 1.441 5.600 ? 2904 100.000 ? 11 1.700 1.760 ? ? ? 0.084 ? ? 1.409 5.600 ? 2837 100.000 ? 12 1.760 1.840 ? ? ? 0.068 ? ? 1.459 5.700 ? 2877 100.000 ? 13 1.840 1.940 ? ? ? 0.054 ? ? 1.587 5.700 ? 2835 100.000 ? 14 1.940 2.060 ? ? ? 0.053 ? ? 2.031 5.700 ? 2809 100.000 ? 15 2.060 2.220 ? ? ? 0.049 ? ? 2.329 5.600 ? 2885 100.000 ? 16 2.220 2.450 ? ? ? 0.040 ? ? 1.918 5.600 ? 2849 100.000 ? 17 2.450 2.800 ? ? ? 0.030 ? ? 1.429 5.500 ? 2865 100.000 ? 18 2.800 3.530 ? ? ? 0.027 ? ? 1.419 5.800 ? 2837 100.000 ? 19 3.530 40.000 ? ? ? 0.025 ? ? 1.308 5.500 ? 2800 97.700 ? 20 # _refine.entry_id 3O46 _refine.ls_d_res_high 1.3000 _refine.ls_d_res_low 33.3080 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8070 _refine.ls_number_reflns_obs 28929 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY . The structure was originally solved using data measured with the same crystal on a copper rotating anode. The model was refined against higher resolution synchrotron data. Scaled synchrotron intensities have been deposited along with the structure factors. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1840 _refine.ls_R_factor_R_work 0.1839 _refine.ls_wR_factor_R_work 0.1920 _refine.ls_R_factor_R_free 0.1908 _refine.ls_wR_factor_R_free 0.1950 _refine.ls_percent_reflns_R_free 5.0090 _refine.ls_number_reflns_R_free 1449 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 12.9910 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.5840 _refine.aniso_B[2][2] 0.5840 _refine.aniso_B[3][3] -0.8760 _refine.aniso_B[1][2] 0.2920 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9590 _refine.correlation_coeff_Fo_to_Fc_free 0.9580 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R_Free 0.0420 _refine.overall_SU_ML 0.0240 _refine.overall_SU_B 1.1950 _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 44.670 _refine.B_iso_min 9.100 _refine.occupancy_max 1.000 _refine.occupancy_min 0.010 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.046 _refine.pdbx_diffrn_id 2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 617 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 699 _refine_hist.d_res_high 1.3000 _refine_hist.d_res_low 33.3080 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 700 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 493 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 963 1.679 1.987 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1231 0.921 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 105 6.733 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 26 36.165 25.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 140 10.900 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 6.682 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 119 0.110 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 792 0.008 0.021 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 121 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 453 1.902 1.500 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 185 0.565 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 749 2.973 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 247 3.989 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 203 6.028 4.500 ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1193 1.413 3.000 ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_low _refine_ls_shell.d_res_high _refine_ls_shell.number_reflns_all _refine_ls_shell.percent_reflns_obs _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.number_reflns_R_free _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.R_factor_all _refine_ls_shell.pdbx_refine_id 20 1.334 1.300 2137 99.860 2020 0.217 114 0.238 . . . . . 'X-RAY DIFFRACTION' 20 1.370 1.334 2075 100.000 1972 0.196 103 0.221 . . . . . 'X-RAY DIFFRACTION' 20 1.410 1.370 2012 99.801 1877 0.169 131 0.164 . . . . . 'X-RAY DIFFRACTION' 20 1.453 1.410 1964 99.898 1866 0.166 96 0.210 . . . . . 'X-RAY DIFFRACTION' 20 1.501 1.453 1900 99.895 1785 0.145 113 0.165 . . . . . 'X-RAY DIFFRACTION' 20 1.553 1.501 1832 99.836 1745 0.152 84 0.185 . . . . . 'X-RAY DIFFRACTION' 20 1.612 1.553 1774 99.944 1689 0.155 84 0.207 . . . . . 'X-RAY DIFFRACTION' 20 1.677 1.612 1725 99.884 1647 0.153 76 0.151 . . . . . 'X-RAY DIFFRACTION' 20 1.752 1.677 1641 99.939 1565 0.158 75 0.188 . . . . . 'X-RAY DIFFRACTION' 20 1.837 1.752 1571 99.873 1496 0.159 73 0.168 . . . . . 'X-RAY DIFFRACTION' 20 1.936 1.837 1497 99.866 1421 0.157 74 0.206 . . . . . 'X-RAY DIFFRACTION' 20 2.053 1.936 1399 99.857 1337 0.155 60 0.187 . . . . . 'X-RAY DIFFRACTION' 20 2.194 2.053 1342 99.925 1257 0.155 84 0.156 . . . . . 'X-RAY DIFFRACTION' 20 2.369 2.194 1246 100.000 1199 0.150 47 0.122 . . . . . 'X-RAY DIFFRACTION' 20 2.594 2.369 1151 99.739 1093 0.187 55 0.203 . . . . . 'X-RAY DIFFRACTION' 20 2.898 2.594 1045 99.904 1007 0.200 37 0.187 . . . . . 'X-RAY DIFFRACTION' 20 3.342 2.898 909 100.000 856 0.215 53 0.192 . . . . . 'X-RAY DIFFRACTION' 20 4.083 3.342 786 100.000 752 0.195 34 0.199 . . . . . 'X-RAY DIFFRACTION' 20 5.731 4.083 619 99.515 581 0.196 35 0.206 . . . . . 'X-RAY DIFFRACTION' 20 33.308 5.731 360 93.333 315 0.324 21 0.310 . . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3O46 _struct.title 'Crystal structure of the PDZ domain of MPP7' _struct.pdbx_descriptor 'MAGUK p55 subfamily member 7' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag N _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O46 _struct_keywords.text 'pdz domain, structural genomics consortium, SGC, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 39 ? GLY A 45 ? GLY A 171 GLY A 177 1 ? 7 HELX_P HELX_P2 2 ARG A 65 ? SER A 76 ? ARG A 197 SER A 208 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ILE 35 C ? ? ? 1_555 A MSE 36 N ? ? A ILE 167 A MSE 168 1_555 ? ? ? ? ? ? ? 1.315 ? covale2 covale ? ? A MSE 36 C ? ? ? 1_555 A ARG 37 N ? ? A MSE 168 A ARG 169 1_555 ? ? ? ? ? ? ? 1.342 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 6 ? LYS A 12 ? LYS A 138 LYS A 144 A 2 GLY A 78 ? ILE A 85 ? GLY A 210 ILE A 217 A 3 GLU A 52 ? VAL A 56 ? GLU A 184 VAL A 188 A 4 ILE A 30 ? ILE A 35 ? ILE A 162 ILE A 167 A 5 ALA A 19 ? LYS A 23 ? ALA A 151 LYS A 155 B 1 LYS A 6 ? LYS A 12 ? LYS A 138 LYS A 144 B 2 GLY A 78 ? ILE A 85 ? GLY A 210 ILE A 217 B 3 GLU A 52 ? VAL A 56 ? GLU A 184 VAL A 188 B 4 ILE A 59 ? PRO A 60 ? ILE A 191 PRO A 192 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 10 ? N LEU A 142 O ILE A 80 ? O ILE A 212 A 2 3 O LYS A 83 ? O LYS A 215 N ARG A 54 ? N ARG A 186 A 3 4 O LEU A 53 ? O LEU A 185 N ILE A 30 ? N ILE A 162 A 4 5 O ALA A 33 ? O ALA A 165 N THR A 20 ? N THR A 152 B 1 2 N LEU A 10 ? N LEU A 142 O ILE A 80 ? O ILE A 212 B 2 3 O LYS A 83 ? O LYS A 215 N ARG A 54 ? N ARG A 186 B 3 4 N VAL A 56 ? N VAL A 188 O ILE A 59 ? O ILE A 191 # _atom_sites.entry_id 3O46 _atom_sites.fract_transf_matrix[1][1] 0.015011 _atom_sites.fract_transf_matrix[1][2] 0.008667 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017334 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021517 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE X # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 133 ? ? ? A . n A 1 2 SER 2 134 ? ? ? A . n A 1 3 ASP 3 135 ? ? ? A . n A 1 4 SER 4 136 136 SER SER A . n A 1 5 VAL 5 137 137 VAL VAL A . n A 1 6 LYS 6 138 138 LYS LYS A . n A 1 7 ILE 7 139 139 ILE ILE A . n A 1 8 ILE 8 140 140 ILE ILE A . n A 1 9 ARG 9 141 141 ARG ARG A . n A 1 10 LEU 10 142 142 LEU LEU A . n A 1 11 VAL 11 143 143 VAL VAL A . n A 1 12 LYS 12 144 144 LYS LYS A . n A 1 13 ASN 13 145 145 ASN ASN A . n A 1 14 ARG 14 146 146 ARG ARG A . n A 1 15 GLU 15 147 147 GLU GLU A . n A 1 16 PRO 16 148 148 PRO PRO A . n A 1 17 LEU 17 149 149 LEU LEU A . n A 1 18 GLY 18 150 150 GLY GLY A . n A 1 19 ALA 19 151 151 ALA ALA A . n A 1 20 THR 20 152 152 THR THR A . n A 1 21 ILE 21 153 153 ILE ILE A . n A 1 22 LYS 22 154 154 LYS LYS A . n A 1 23 LYS 23 155 155 LYS LYS A . n A 1 24 ASP 24 156 156 ASP ASP A . n A 1 25 GLU 25 157 157 GLU GLU A . n A 1 26 GLN 26 158 158 GLN GLN A . n A 1 27 THR 27 159 159 THR THR A . n A 1 28 GLY 28 160 160 GLY GLY A . n A 1 29 ALA 29 161 161 ALA ALA A . n A 1 30 ILE 30 162 162 ILE ILE A . n A 1 31 ILE 31 163 163 ILE ILE A . n A 1 32 VAL 32 164 164 VAL VAL A . n A 1 33 ALA 33 165 165 ALA ALA A . n A 1 34 ARG 34 166 166 ARG ARG A . n A 1 35 ILE 35 167 167 ILE ILE A . n A 1 36 MSE 36 168 168 MSE MSE A . n A 1 37 ARG 37 169 169 ARG ARG A . n A 1 38 GLY 38 170 170 GLY GLY A . n A 1 39 GLY 39 171 171 GLY GLY A . n A 1 40 ALA 40 172 172 ALA ALA A . n A 1 41 ALA 41 173 173 ALA ALA A . n A 1 42 ASP 42 174 174 ASP ASP A . n A 1 43 ARG 43 175 175 ARG ARG A . n A 1 44 SER 44 176 176 SER SER A . n A 1 45 GLY 45 177 177 GLY GLY A . n A 1 46 LEU 46 178 178 LEU LEU A . n A 1 47 ILE 47 179 179 ILE ILE A . n A 1 48 HIS 48 180 180 HIS HIS A . n A 1 49 VAL 49 181 181 VAL VAL A . n A 1 50 GLY 50 182 182 GLY GLY A . n A 1 51 ASP 51 183 183 ASP ASP A . n A 1 52 GLU 52 184 184 GLU GLU A . n A 1 53 LEU 53 185 185 LEU LEU A . n A 1 54 ARG 54 186 186 ARG ARG A . n A 1 55 GLU 55 187 187 GLU GLU A . n A 1 56 VAL 56 188 188 VAL VAL A . n A 1 57 ASN 57 189 189 ASN ASN A . n A 1 58 GLY 58 190 190 GLY GLY A . n A 1 59 ILE 59 191 191 ILE ILE A . n A 1 60 PRO 60 192 192 PRO PRO A . n A 1 61 VAL 61 193 193 VAL VAL A . n A 1 62 GLU 62 194 194 GLU GLU A . n A 1 63 ASP 63 195 195 ASP ASP A . n A 1 64 LYS 64 196 196 LYS LYS A . n A 1 65 ARG 65 197 197 ARG ARG A . n A 1 66 PRO 66 198 198 PRO PRO A . n A 1 67 GLU 67 199 199 GLU GLU A . n A 1 68 GLU 68 200 200 GLU GLU A . n A 1 69 ILE 69 201 201 ILE ILE A . n A 1 70 ILE 70 202 202 ILE ILE A . n A 1 71 GLN 71 203 203 GLN GLN A . n A 1 72 ILE 72 204 204 ILE ILE A . n A 1 73 LEU 73 205 205 LEU LEU A . n A 1 74 ALA 74 206 206 ALA ALA A . n A 1 75 GLN 75 207 207 GLN GLN A . n A 1 76 SER 76 208 208 SER SER A . n A 1 77 GLN 77 209 209 GLN GLN A . n A 1 78 GLY 78 210 210 GLY GLY A . n A 1 79 ALA 79 211 211 ALA ALA A . n A 1 80 ILE 80 212 212 ILE ILE A . n A 1 81 THR 81 213 213 THR THR A . n A 1 82 PHE 82 214 214 PHE PHE A . n A 1 83 LYS 83 215 215 LYS LYS A . n A 1 84 ILE 84 216 216 ILE ILE A . n A 1 85 ILE 85 217 217 ILE ILE A . n A 1 86 PRO 86 218 218 PRO PRO A . n A 1 87 GLY 87 219 219 GLY GLY A . n A 1 88 SER 88 220 ? ? ? A . n A 1 89 LYS 89 221 ? ? ? A . n A 1 90 GLU 90 222 ? ? ? A . n A 1 91 GLU 91 223 ? ? ? A . n A 1 92 THR 92 224 ? ? ? A . n A 1 93 PRO 93 225 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Genomics Consortium' _pdbx_SG_project.initial_of_center SGC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UNX 1 1 1 UNX UNX A . C 2 UNX 1 2 2 UNX UNX A . D 2 UNX 1 3 3 UNX UNX A . E 2 UNX 1 4 4 UNX UNX A . F 2 UNX 1 5 5 UNX UNX A . G 2 UNX 1 6 6 UNX UNX A . H 2 UNX 1 7 7 UNX UNX A . I 2 UNX 1 8 8 UNX UNX A . J 2 UNX 1 9 9 UNX UNX A . K 2 UNX 1 10 10 UNX UNX A . L 2 UNX 1 11 11 UNX UNX A . M 2 UNX 1 12 12 UNX UNX A . N 2 UNX 1 13 13 UNX UNX A . O 3 HOH 1 14 14 HOH HOH A . O 3 HOH 2 15 15 HOH HOH A . O 3 HOH 3 16 16 HOH HOH A . O 3 HOH 4 17 17 HOH HOH A . O 3 HOH 5 18 18 HOH HOH A . O 3 HOH 6 19 19 HOH HOH A . O 3 HOH 7 20 20 HOH HOH A . O 3 HOH 8 21 21 HOH HOH A . O 3 HOH 9 22 22 HOH HOH A . O 3 HOH 10 23 23 HOH HOH A . O 3 HOH 11 24 24 HOH HOH A . O 3 HOH 12 25 25 HOH HOH A . O 3 HOH 13 26 26 HOH HOH A . O 3 HOH 14 27 27 HOH HOH A . O 3 HOH 15 28 28 HOH HOH A . O 3 HOH 16 29 29 HOH HOH A . O 3 HOH 17 30 30 HOH HOH A . O 3 HOH 18 31 31 HOH HOH A . O 3 HOH 19 32 32 HOH HOH A . O 3 HOH 20 33 33 HOH HOH A . O 3 HOH 21 34 34 HOH HOH A . O 3 HOH 22 35 35 HOH HOH A . O 3 HOH 23 36 36 HOH HOH A . O 3 HOH 24 37 37 HOH HOH A . O 3 HOH 25 38 38 HOH HOH A . O 3 HOH 26 39 39 HOH HOH A . O 3 HOH 27 40 40 HOH HOH A . O 3 HOH 28 41 41 HOH HOH A . O 3 HOH 29 42 42 HOH HOH A . O 3 HOH 30 43 43 HOH HOH A . O 3 HOH 31 44 44 HOH HOH A . O 3 HOH 32 45 45 HOH HOH A . O 3 HOH 33 46 46 HOH HOH A . O 3 HOH 34 47 47 HOH HOH A . O 3 HOH 35 48 48 HOH HOH A . O 3 HOH 36 49 49 HOH HOH A . O 3 HOH 37 50 50 HOH HOH A . O 3 HOH 38 51 51 HOH HOH A . O 3 HOH 39 52 52 HOH HOH A . O 3 HOH 40 53 53 HOH HOH A . O 3 HOH 41 54 54 HOH HOH A . O 3 HOH 42 55 55 HOH HOH A . O 3 HOH 43 56 56 HOH HOH A . O 3 HOH 44 57 57 HOH HOH A . O 3 HOH 45 58 58 HOH HOH A . O 3 HOH 46 59 59 HOH HOH A . O 3 HOH 47 60 60 HOH HOH A . O 3 HOH 48 61 61 HOH HOH A . O 3 HOH 49 62 62 HOH HOH A . O 3 HOH 50 63 63 HOH HOH A . O 3 HOH 51 64 64 HOH HOH A . O 3 HOH 52 65 65 HOH HOH A . O 3 HOH 53 66 66 HOH HOH A . O 3 HOH 54 67 67 HOH HOH A . O 3 HOH 55 68 68 HOH HOH A . O 3 HOH 56 69 69 HOH HOH A . O 3 HOH 57 226 1 HOH HOH A . O 3 HOH 58 227 2 HOH HOH A . O 3 HOH 59 228 3 HOH HOH A . O 3 HOH 60 229 4 HOH HOH A . O 3 HOH 61 230 5 HOH HOH A . O 3 HOH 62 231 6 HOH HOH A . O 3 HOH 63 232 7 HOH HOH A . O 3 HOH 64 233 8 HOH HOH A . O 3 HOH 65 234 9 HOH HOH A . O 3 HOH 66 235 10 HOH HOH A . O 3 HOH 67 236 11 HOH HOH A . O 3 HOH 68 237 12 HOH HOH A . O 3 HOH 69 238 13 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 36 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 168 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4210 ? 1 MORE -16 ? 1 'SSA (A^2)' 11230 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 33.3080000000 0.8660254038 -0.5000000000 0.0000000000 57.6911482985 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -33.3080000000 -0.8660254038 -0.5000000000 0.0000000000 57.6911482985 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 33 ? O HOH . 2 1 A HOH 49 ? O HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-04 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 REFMAC 5.5.0109 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 SHELXDE . ? ? ? ? phasing ? ? ? # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 VAL _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 193 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 194 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -149.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 138 ? CE ? A LYS 6 CE 2 1 Y 1 A LYS 138 ? NZ ? A LYS 6 NZ 3 1 Y 1 A ARG 146 ? NE ? A ARG 14 NE 4 1 Y 1 A ARG 146 ? CZ ? A ARG 14 CZ 5 1 Y 1 A ARG 146 ? NH1 ? A ARG 14 NH1 6 1 Y 1 A ARG 146 ? NH2 ? A ARG 14 NH2 7 1 Y 1 A LYS 154 ? NZ ? A LYS 22 NZ 8 1 Y 1 A GLU 157 ? CD ? A GLU 25 CD 9 1 Y 1 A GLU 157 ? OE1 ? A GLU 25 OE1 10 1 Y 1 A GLU 157 ? OE2 ? A GLU 25 OE2 11 1 Y 1 A ARG 169 ? CG ? A ARG 37 CG 12 1 Y 1 A ARG 169 ? CD ? A ARG 37 CD 13 1 Y 1 A ARG 169 ? NE ? A ARG 37 NE 14 1 Y 1 A ARG 169 ? CZ ? A ARG 37 CZ 15 1 Y 1 A ARG 169 ? NH1 ? A ARG 37 NH1 16 1 Y 1 A ARG 169 ? NH2 ? A ARG 37 NH2 17 1 Y 1 A ARG 197 ? NE ? A ARG 65 NE 18 1 Y 1 A ARG 197 ? CZ ? A ARG 65 CZ 19 1 Y 1 A ARG 197 ? NH1 ? A ARG 65 NH1 20 1 Y 1 A ARG 197 ? NH2 ? A ARG 65 NH2 21 1 Y 1 A LYS 215 ? CE ? A LYS 83 CE 22 1 Y 1 A LYS 215 ? NZ ? A LYS 83 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 133 ? A GLY 1 2 1 Y 1 A SER 134 ? A SER 2 3 1 Y 1 A ASP 135 ? A ASP 3 4 1 Y 1 A SER 220 ? A SER 88 5 1 Y 1 A LYS 221 ? A LYS 89 6 1 Y 1 A GLU 222 ? A GLU 90 7 1 Y 1 A GLU 223 ? A GLU 91 8 1 Y 1 A THR 224 ? A THR 92 9 1 Y 1 A PRO 225 ? A PRO 93 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'UNKNOWN ATOM OR ION' UNX 3 water HOH #