HEADER HYDROLASE, HYDROLASE ACTIVATOR 26-JUL-10 3O47 TITLE CRYSTAL STRUCTURE OF ARFGAP1-ARF1 FUSION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1, ADP- COMPND 3 RIBOSYLATION FACTOR 1; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: ARF1GAP, UNP RESIDUES 1-140, ARF1, UNP RESIDUES 11-181; COMPND 6 SYNONYM: ARF GAP 1, ADP-RIBOSYLATION FACTOR 1 GTPASE-ACTIVATING COMPND 7 PROTEIN, ARF1 GAP, ARF1-DIRECTED GTPASE-ACTIVATING PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARFGAP1, ARF1GAP, ARF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS STRUCTURAL GENOMICS CONSORTIUM, GTPASE ACTIVATION, FUSION PROTEIN, KEYWDS 2 CHIMERA PROTEIN, SGC, HYDROLASE, HYDROLASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,Y.TONG,L.NEDYALKOVA,W.TEMPEL,X.GUAN,L.CROMBET,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3O47 1 REMARK SEQADV LINK REVDAT 3 08-NOV-17 3O47 1 REMARK REVDAT 2 09-AUG-17 3O47 1 SOURCE REMARK REVDAT 1 11-AUG-10 3O47 0 JRNL AUTH H.WANG,Y.TONG,L.NEDYALKOVA,W.TEMPEL,X.GUAN,L.CROMBET, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,J.WEIGELT,A.BOCHKAREV, JRNL AUTH 3 H.PARK JRNL TITL CRYSTAL STRUCTURE OF ARFGAP1-ARF1 FUSION PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 20246 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS (SFTOOLS) REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.070 REMARK 3 FREE R VALUE TEST SET COUNT : 823 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.95 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2838 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2450 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2752 REMARK 3 BIN R VALUE (WORKING SET) : 0.2436 REMARK 3 BIN FREE R VALUE : 0.2895 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.03 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 86 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4446 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.39530 REMARK 3 B22 (A**2) : -17.44820 REMARK 3 B33 (A**2) : 0.05290 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.387 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4597 ; 2.000 ; NULL REMARK 3 BOND ANGLES : 6253 ; 2.000 ; NULL REMARK 3 TORSION ANGLES : 1548 ; 2.000 ; NULL REMARK 3 TRIGONAL CARBON PLANES : 109 ; 2.000 ; NULL REMARK 3 GENERAL PLANES : 664 ; 5.000 ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : 4597 ; 20.000 ; NULL REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 592 ; 5.000 ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5222 ; 4.000 ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.08 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.75 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.71 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PROGRAMS COOT AND PHENIX AND THE REMARK 3 MOLPROBITY SERVER WERE ALSO USED DURING REFINEMENT. REMARK 4 REMARK 4 3O47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060643. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NOT APPLICABLE REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20250 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 1HUR, 3DWD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG-3350, 0.2M TRILITHIUM SULFATE, REMARK 280 PH NOT APPLICABLE, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.64900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.84250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.58050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.84250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.64900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.58050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.64900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.58050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.84250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.58050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.64900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.84250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -64.58050 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -39.64900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 157.68500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 PRO A 4 REMARK 465 SER A 129 REMARK 465 PRO A 130 REMARK 465 ALA A 131 REMARK 465 GLN A 132 REMARK 465 ASN A 133 REMARK 465 PRO A 139 REMARK 465 ARG A 140 REMARK 465 GLY A 141 REMARK 465 LEU A 142 REMARK 465 PHE A 143 REMARK 465 GLY A 144 REMARK 465 GLY A 200 REMARK 465 GLN A 201 REMARK 465 ASP A 202 REMARK 465 LYS A 203 REMARK 465 ILE A 204 REMARK 465 GLN A 310 REMARK 465 LYS A 311 REMARK 465 MET B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 SER B 128 REMARK 465 SER B 129 REMARK 465 PRO B 130 REMARK 465 ALA B 131 REMARK 465 GLN B 132 REMARK 465 ASN B 133 REMARK 465 GLN B 138 REMARK 465 PRO B 139 REMARK 465 ARG B 140 REMARK 465 GLY B 141 REMARK 465 LEU B 142 REMARK 465 PHE B 143 REMARK 465 GLY B 144 REMARK 465 LYS B 145 REMARK 465 GLY B 200 REMARK 465 GLN B 201 REMARK 465 ASP B 202 REMARK 465 LYS B 203 REMARK 465 ILE B 204 REMARK 465 ASN B 309 REMARK 465 GLN B 310 REMARK 465 LYS B 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 8 CG CD CE NZ REMARK 470 LYS A 11 CG CD CE NZ REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 ASP A 17 CG OD1 OD2 REMARK 470 HIS A 55 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 62 CG1 CG2 REMARK 470 LYS A 66 CG CD CE NZ REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ARG A 106 CD NE CZ NH1 NH2 REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 SER A 128 OG REMARK 470 THR A 135 OG1 CG2 REMARK 470 GLN A 138 CG CD OE1 NE2 REMARK 470 LYS A 145 CG CD CE NZ REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 ILE A 191 CG1 CG2 CD1 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 207 CG CD1 CD2 REMARK 470 GLU A 235 CD OE1 OE2 REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 262 CG OD1 ND2 REMARK 470 TYR A 297 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 308 NE CZ NH1 NH2 REMARK 470 LYS B 8 CG CD CE NZ REMARK 470 GLU B 12 CG CD OE1 OE2 REMARK 470 GLN B 16 CG CD OE1 NE2 REMARK 470 ASP B 17 CG OD1 OD2 REMARK 470 GLU B 18 CG CD OE1 OE2 REMARK 470 VAL B 54 CG1 CG2 REMARK 470 HIS B 55 CG ND1 CD2 CE1 NE2 REMARK 470 VAL B 62 CG1 CG2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 ILE B 70 CG1 CG2 CD1 REMARK 470 LYS B 82 CD CE NZ REMARK 470 GLU B 85 CD OE1 OE2 REMARK 470 GLU B 91 CG CD OE1 OE2 REMARK 470 ARG B 106 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 122 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 SER B 125 OG REMARK 470 LEU B 126 CG CD1 CD2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 THR B 135 OG1 CG2 REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 ARG B 149 NE CZ NH1 NH2 REMARK 470 TYR B 165 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 168 CD CE NZ REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 213 CG CD OE1 NE2 REMARK 470 ASN B 214 CG OD1 ND2 REMARK 470 GLU B 228 CG CD OE1 OE2 REMARK 470 ARG B 234 NE CZ NH1 NH2 REMARK 470 GLU B 235 CD OE1 OE2 REMARK 470 ARG B 239 NE CZ NH1 NH2 REMARK 470 GLU B 245 CG CD OE1 OE2 REMARK 470 ARG B 247 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 279 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 308 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 17 -141.60 40.24 REMARK 500 THR A 36 -35.45 -38.64 REMARK 500 SER A 89 46.21 -102.47 REMARK 500 LYS A 189 -118.22 53.06 REMARK 500 LYS A 257 30.18 78.53 REMARK 500 ASP B 17 -141.25 39.92 REMARK 500 THR B 36 -35.52 -38.10 REMARK 500 SER B 89 45.83 -102.16 REMARK 500 LYS B 189 -118.31 49.99 REMARK 500 HIS B 280 63.12 62.93 REMARK 500 ARG B 281 120.63 -176.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 22 SG REMARK 620 2 CYS A 25 SG 100.4 REMARK 620 3 CYS A 42 SG 122.4 110.3 REMARK 620 4 CYS A 45 SG 105.8 120.6 98.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 22 SG REMARK 620 2 CYS B 25 SG 104.7 REMARK 620 3 CYS B 42 SG 117.1 108.1 REMARK 620 4 CYS B 45 SG 102.3 116.5 108.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 502 DBREF 3O47 A 1 140 UNP Q8N6T3 ARFG1_HUMAN 1 140 DBREF 3O47 A 141 311 UNP P84077 ARF1_HUMAN 11 181 DBREF 3O47 B 1 140 UNP Q8N6T3 ARFG1_HUMAN 1 140 DBREF 3O47 B 141 311 UNP P84077 ARF1_HUMAN 11 181 SEQADV 3O47 MET A -17 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS A -16 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS A -15 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS A -14 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS A -13 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS A -12 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS A -11 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 SER A -10 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 SER A -9 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 GLY A -8 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 ARG A -7 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 GLU A -6 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 ASN A -5 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 LEU A -4 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 TYR A -3 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 PHE A -2 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 GLN A -1 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 GLY A 0 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 MET B -17 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS B -16 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS B -15 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS B -14 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS B -13 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS B -12 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 HIS B -11 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 SER B -10 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 SER B -9 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 GLY B -8 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 ARG B -7 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 GLU B -6 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 ASN B -5 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 LEU B -4 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 TYR B -3 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 PHE B -2 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 GLN B -1 UNP Q8N6T3 EXPRESSION TAG SEQADV 3O47 GLY B 0 UNP Q8N6T3 EXPRESSION TAG SEQRES 1 A 329 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 329 LEU TYR PHE GLN GLY MET ALA SER PRO ARG THR ARG LYS SEQRES 3 A 329 VAL LEU LYS GLU VAL ARG VAL GLN ASP GLU ASN ASN VAL SEQRES 4 A 329 CYS PHE GLU CYS GLY ALA PHE ASN PRO GLN TRP VAL SER SEQRES 5 A 329 VAL THR TYR GLY ILE TRP ILE CYS LEU GLU CYS SER GLY SEQRES 6 A 329 ARG HIS ARG GLY LEU GLY VAL HIS LEU SER PHE VAL ARG SEQRES 7 A 329 SER VAL THR MET ASP LYS TRP LYS ASP ILE GLU LEU GLU SEQRES 8 A 329 LYS MET LYS ALA GLY GLY ASN ALA LYS PHE ARG GLU PHE SEQRES 9 A 329 LEU GLU SER GLN GLU ASP TYR ASP PRO CYS TRP SER LEU SEQRES 10 A 329 GLN GLU LYS TYR ASN SER ARG ALA ALA ALA LEU PHE ARG SEQRES 11 A 329 ASP LYS VAL VAL ALA LEU ALA GLU GLY ARG GLU TRP SER SEQRES 12 A 329 LEU GLU SER SER PRO ALA GLN ASN TRP THR PRO PRO GLN SEQRES 13 A 329 PRO ARG GLY LEU PHE GLY LYS LYS GLU MET ARG ILE LEU SEQRES 14 A 329 MET VAL GLY LEU ASP ALA ALA GLY LYS THR THR ILE LEU SEQRES 15 A 329 TYR LYS LEU LYS LEU GLY GLU ILE VAL THR THR ILE PRO SEQRES 16 A 329 THR ILE GLY PHE ASN VAL GLU THR VAL GLU TYR LYS ASN SEQRES 17 A 329 ILE SER PHE THR VAL TRP ASP VAL GLY GLY GLN ASP LYS SEQRES 18 A 329 ILE ARG PRO LEU TRP ARG HIS TYR PHE GLN ASN THR GLN SEQRES 19 A 329 GLY LEU ILE PHE VAL VAL ASP SER ASN ASP ARG GLU ARG SEQRES 20 A 329 VAL ASN GLU ALA ARG GLU GLU LEU MET ARG MET LEU ALA SEQRES 21 A 329 GLU ASP GLU LEU ARG ASP ALA VAL LEU LEU VAL PHE ALA SEQRES 22 A 329 ASN LYS GLN ASP LEU PRO ASN ALA MET ASN ALA ALA GLU SEQRES 23 A 329 ILE THR ASP LYS LEU GLY LEU HIS SER LEU ARG HIS ARG SEQRES 24 A 329 ASN TRP TYR ILE GLN ALA THR CYS ALA THR SER GLY ASP SEQRES 25 A 329 GLY LEU TYR GLU GLY LEU ASP TRP LEU SER ASN GLN LEU SEQRES 26 A 329 ARG ASN GLN LYS SEQRES 1 B 329 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 329 LEU TYR PHE GLN GLY MET ALA SER PRO ARG THR ARG LYS SEQRES 3 B 329 VAL LEU LYS GLU VAL ARG VAL GLN ASP GLU ASN ASN VAL SEQRES 4 B 329 CYS PHE GLU CYS GLY ALA PHE ASN PRO GLN TRP VAL SER SEQRES 5 B 329 VAL THR TYR GLY ILE TRP ILE CYS LEU GLU CYS SER GLY SEQRES 6 B 329 ARG HIS ARG GLY LEU GLY VAL HIS LEU SER PHE VAL ARG SEQRES 7 B 329 SER VAL THR MET ASP LYS TRP LYS ASP ILE GLU LEU GLU SEQRES 8 B 329 LYS MET LYS ALA GLY GLY ASN ALA LYS PHE ARG GLU PHE SEQRES 9 B 329 LEU GLU SER GLN GLU ASP TYR ASP PRO CYS TRP SER LEU SEQRES 10 B 329 GLN GLU LYS TYR ASN SER ARG ALA ALA ALA LEU PHE ARG SEQRES 11 B 329 ASP LYS VAL VAL ALA LEU ALA GLU GLY ARG GLU TRP SER SEQRES 12 B 329 LEU GLU SER SER PRO ALA GLN ASN TRP THR PRO PRO GLN SEQRES 13 B 329 PRO ARG GLY LEU PHE GLY LYS LYS GLU MET ARG ILE LEU SEQRES 14 B 329 MET VAL GLY LEU ASP ALA ALA GLY LYS THR THR ILE LEU SEQRES 15 B 329 TYR LYS LEU LYS LEU GLY GLU ILE VAL THR THR ILE PRO SEQRES 16 B 329 THR ILE GLY PHE ASN VAL GLU THR VAL GLU TYR LYS ASN SEQRES 17 B 329 ILE SER PHE THR VAL TRP ASP VAL GLY GLY GLN ASP LYS SEQRES 18 B 329 ILE ARG PRO LEU TRP ARG HIS TYR PHE GLN ASN THR GLN SEQRES 19 B 329 GLY LEU ILE PHE VAL VAL ASP SER ASN ASP ARG GLU ARG SEQRES 20 B 329 VAL ASN GLU ALA ARG GLU GLU LEU MET ARG MET LEU ALA SEQRES 21 B 329 GLU ASP GLU LEU ARG ASP ALA VAL LEU LEU VAL PHE ALA SEQRES 22 B 329 ASN LYS GLN ASP LEU PRO ASN ALA MET ASN ALA ALA GLU SEQRES 23 B 329 ILE THR ASP LYS LEU GLY LEU HIS SER LEU ARG HIS ARG SEQRES 24 B 329 ASN TRP TYR ILE GLN ALA THR CYS ALA THR SER GLY ASP SEQRES 25 B 329 GLY LEU TYR GLU GLY LEU ASP TRP LEU SER ASN GLN LEU SEQRES 26 B 329 ARG ASN GLN LYS HET ZN A 501 1 HET GDP A 502 28 HET ZN B 501 1 HET GDP B 502 28 HETNAM ZN ZINC ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 GDP 2(C10 H15 N5 O11 P2) HELIX 1 1 ARG A 5 GLN A 16 1 12 HELIX 2 2 THR A 36 GLY A 38 5 3 HELIX 3 3 CYS A 42 GLY A 53 1 12 HELIX 4 4 LYS A 68 GLY A 78 1 11 HELIX 5 5 GLY A 79 SER A 89 1 11 HELIX 6 6 SER A 98 SER A 105 1 8 HELIX 7 7 SER A 105 GLU A 120 1 16 HELIX 8 8 GLY A 159 LEU A 167 1 9 HELIX 9 9 LEU A 207 GLN A 213 1 7 HELIX 10 10 ARG A 229 ALA A 242 1 14 HELIX 11 11 GLU A 243 ARG A 247 5 5 HELIX 12 12 ASN A 265 GLY A 274 1 10 HELIX 13 13 GLY A 295 ARG A 308 1 14 HELIX 14 14 SER B 3 GLN B 16 1 14 HELIX 15 15 THR B 36 GLY B 38 5 3 HELIX 16 16 CYS B 42 GLY B 51 1 10 HELIX 17 17 LYS B 68 GLY B 78 1 11 HELIX 18 18 GLY B 79 SER B 89 1 11 HELIX 19 19 SER B 98 SER B 105 1 8 HELIX 20 20 SER B 105 GLU B 120 1 16 HELIX 21 21 GLY B 159 LYS B 168 1 10 HELIX 22 22 LEU B 207 GLN B 213 1 7 HELIX 23 23 ARG B 229 ALA B 242 1 14 HELIX 24 24 GLU B 243 ARG B 247 5 5 HELIX 25 25 ASN B 265 GLY B 274 1 10 HELIX 26 26 GLY B 295 ARG B 308 1 14 SHEET 1 A 3 ILE A 39 ILE A 41 0 SHEET 2 A 3 TRP A 32 SER A 34 -1 N TRP A 32 O ILE A 41 SHEET 3 A 3 VAL A 59 SER A 61 -1 O ARG A 60 N VAL A 33 SHEET 1 B 7 VAL A 173 THR A 178 0 SHEET 2 B 7 PHE A 181 TYR A 188 -1 O VAL A 183 N THR A 175 SHEET 3 B 7 ILE A 191 ASP A 197 -1 O PHE A 193 N VAL A 186 SHEET 4 B 7 MET A 148 GLY A 154 1 N MET A 152 O THR A 194 SHEET 5 B 7 THR A 215 ASP A 223 1 O ILE A 219 N LEU A 151 SHEET 6 B 7 VAL A 250 ASN A 256 1 O VAL A 250 N LEU A 218 SHEET 7 B 7 TRP A 283 ALA A 287 1 O TYR A 284 N VAL A 253 SHEET 1 C 3 ILE B 39 ILE B 41 0 SHEET 2 C 3 TRP B 32 SER B 34 -1 N TRP B 32 O ILE B 41 SHEET 3 C 3 VAL B 59 SER B 61 -1 O ARG B 60 N VAL B 33 SHEET 1 D 7 VAL B 173 THR B 178 0 SHEET 2 D 7 PHE B 181 TYR B 188 -1 O VAL B 183 N THR B 175 SHEET 3 D 7 ILE B 191 ASP B 197 -1 O ILE B 191 N TYR B 188 SHEET 4 D 7 MET B 148 GLY B 154 1 N ILE B 150 O SER B 192 SHEET 5 D 7 GLY B 217 ASP B 223 1 O ILE B 219 N LEU B 151 SHEET 6 D 7 VAL B 250 ASN B 256 1 O VAL B 250 N LEU B 218 SHEET 7 D 7 TRP B 283 ALA B 287 1 O TYR B 284 N VAL B 253 LINK SG CYS A 22 ZN ZN A 501 1555 1555 2.37 LINK SG CYS A 25 ZN ZN A 501 1555 1555 2.22 LINK SG CYS A 42 ZN ZN A 501 1555 1555 2.38 LINK SG CYS A 45 ZN ZN A 501 1555 1555 2.15 LINK SG CYS B 22 ZN ZN B 501 1555 1555 2.39 LINK SG CYS B 25 ZN ZN B 501 1555 1555 2.28 LINK SG CYS B 42 ZN ZN B 501 1555 1555 2.25 LINK SG CYS B 45 ZN ZN B 501 1555 1555 2.30 SITE 1 AC1 4 CYS A 22 CYS A 25 CYS A 42 CYS A 45 SITE 1 AC2 13 ALA A 157 ALA A 158 GLY A 159 LYS A 160 SITE 2 AC2 13 THR A 161 THR A 162 ASN A 256 LYS A 257 SITE 3 AC2 13 ASP A 259 LEU A 260 CYS A 289 ALA A 290 SITE 4 AC2 13 THR A 291 SITE 1 AC3 4 CYS B 22 CYS B 25 CYS B 42 CYS B 45 SITE 1 AC4 15 LEU B 155 ASP B 156 ALA B 157 ALA B 158 SITE 2 AC4 15 GLY B 159 LYS B 160 THR B 161 THR B 162 SITE 3 AC4 15 ASN B 256 LYS B 257 ASP B 259 LEU B 260 SITE 4 AC4 15 CYS B 289 ALA B 290 THR B 291 CRYST1 79.298 129.161 157.685 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007742 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006342 0.00000