HEADER IMMUNE SYSTEM 27-JUL-10 3O4K TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF PEPTIDOGLYCAN RECOGNITION PROTEIN TITLE 2 (PGRP-S) AND LIPOTEICHOIC ACID AT 2.1 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDOGLYCAN RECOGNITION PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: PEPTIDOGLYCAN RECOGNITION PROTEIN SHORT, PGRP-S SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMELUS DROMEDARIUS; SOURCE 3 ORGANISM_COMMON: DROMEDARY; SOURCE 4 ORGANISM_TAXID: 9838 KEYWDS IMMUNE RESPONSE, SECRETED, ANTIMICROBIAL, PGRP, ANTIBIOTIC, KEYWDS 2 PEPTIDOGLYCAN BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR P.SHARMA,D.DUBE,M.SINHA,P.KAUR,S.SHARMA,T.P.SINGH REVDAT 3 01-NOV-23 3O4K 1 REMARK REVDAT 2 31-AUG-11 3O4K 1 JRNL VERSN REVDAT 1 25-AUG-10 3O4K 0 JRNL AUTH P.SHARMA,D.DUBE,A.SINGH,B.MISHRA,N.SINGH,M.SINHA,S.DEY, JRNL AUTH 2 P.KAUR,D.K.MITRA,S.SHARMA,T.P.SINGH JRNL TITL STRUCTURAL BASIS OF RECOGNITION OF PATHOGEN-ASSOCIATED JRNL TITL 2 MOLECULAR PATTERNS AND INHIBITION OF PROINFLAMMATORY JRNL TITL 3 CYTOKINES BY CAMEL PEPTIDOGLYCAN RECOGNITION PROTEIN JRNL REF J.BIOL.CHEM. V. 286 16208 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21454594 JRNL DOI 10.1074/JBC.M111.228163 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.86 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4688727.720 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 40418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2020 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5507 REMARK 3 BIN R VALUE (WORKING SET) : 0.3910 REMARK 3 BIN FREE R VALUE : 0.4570 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 285 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5347 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 523 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.33000 REMARK 3 B22 (A**2) : -3.05000 REMARK 3 B33 (A**2) : -2.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.52 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : 1.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 15.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.40 REMARK 3 BSOL : 76.78 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : LIG.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3O4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060656. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, AUTOMAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40418 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36200 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3C2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM POTASSIUM TARTRATE, 10% REMARK 280 PEG 3350 , PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.05150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 81.40000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.05150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.40000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.05150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.74500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.40000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.05150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.74500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 373 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 68 176.10 179.75 REMARK 500 HIS A 93 -15.28 -148.09 REMARK 500 ASN A 140 42.43 -105.02 REMARK 500 HIS B 93 -18.50 -142.87 REMARK 500 ASN B 140 67.98 -118.90 REMARK 500 ALA C 5 57.72 -98.58 REMARK 500 CYS C 6 30.26 -89.12 REMARK 500 SER C 8 49.98 -101.03 REMARK 500 HIS C 93 -19.46 -140.23 REMARK 500 ALA D 5 30.49 -89.55 REMARK 500 ASP D 44 26.87 -142.74 REMARK 500 HIS D 93 -11.88 -146.38 REMARK 500 ALA D 94 15.36 -141.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LTC C 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 172 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA D 173 DBREF 3O4K A 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 3O4K B 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 3O4K C 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 DBREF 3O4K D 1 171 UNP Q9GK12 PGRP1_CAMDR 23 193 SEQRES 1 A 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 A 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 A 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 A 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 A 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 A 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 A 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 A 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 A 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 A 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 A 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 A 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 A 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 A 171 ARG ALA SEQRES 1 B 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 B 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 B 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 B 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 B 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 B 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 B 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 B 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 B 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 B 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 B 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 B 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 B 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 B 171 ARG ALA SEQRES 1 C 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 C 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 C 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 C 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 C 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 C 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 C 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 C 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 C 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 C 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 C 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 C 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 C 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 C 171 ARG ALA SEQRES 1 D 171 GLU ASP PRO PRO ALA CYS GLY SER ILE VAL PRO ARG ARG SEQRES 2 D 171 GLU TRP ARG ALA LEU ALA SER GLU CYS ARG GLU ARG LEU SEQRES 3 D 171 THR ARG PRO VAL ARG TYR VAL VAL VAL SER HIS THR ALA SEQRES 4 D 171 GLY SER HIS CYS ASP THR PRO ALA SER CYS ALA GLN GLN SEQRES 5 D 171 ALA GLN ASN VAL GLN SER TYR HIS VAL ARG ASN LEU GLY SEQRES 6 D 171 TRP CYS ASP VAL GLY TYR ASN PHE LEU ILE GLY GLU ASP SEQRES 7 D 171 GLY LEU VAL TYR GLU GLY ARG GLY TRP ASN ILE LYS GLY SEQRES 8 D 171 ALA HIS ALA GLY PRO THR TRP ASN PRO ILE SER ILE GLY SEQRES 9 D 171 ILE SER PHE MET GLY ASN TYR MET ASN ARG VAL PRO PRO SEQRES 10 D 171 PRO ARG ALA LEU ARG ALA ALA GLN ASN LEU LEU ALA CYS SEQRES 11 D 171 GLY VAL ALA LEU GLY ALA LEU ARG SER ASN TYR GLU VAL SEQRES 12 D 171 LYS GLY HIS ARG ASP VAL GLN PRO THR LEU SER PRO GLY SEQRES 13 D 171 ASP ARG LEU TYR GLU ILE ILE GLN THR TRP SER HIS TYR SEQRES 14 D 171 ARG ALA HET LTC C 172 54 HET GOL D 172 6 HET TLA D 173 10 HETNAM LTC (2S)-1-({3-O-[2-(ACETYLAMINO)-4-AMINO-2,4,6-TRIDEOXY- HETNAM 2 LTC BETA-D-GALACTOPYRANOSYL]-ALPHA-D-GLUCOPYRANOSYL}OXY)- HETNAM 3 LTC 3-(HEPTANOYLOXY)PROPAN-2-YL (7Z)-PENTADEC-7-ENOATE HETNAM GOL GLYCEROL HETNAM TLA L(+)-TARTARIC ACID HETSYN LTC LIPOTEICHOIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 LTC C39 H70 N2 O13 FORMUL 6 GOL C3 H8 O3 FORMUL 7 TLA C4 H6 O6 FORMUL 8 HOH *523(H2 O) HELIX 1 1 THR A 45 ASN A 63 1 19 HELIX 2 2 ALA A 94 ASN A 99 1 6 HELIX 3 3 PRO A 117 LEU A 134 1 18 HELIX 4 4 HIS A 146 GLN A 150 1 5 HELIX 5 5 GLY A 156 GLN A 164 1 9 HELIX 6 6 ALA B 5 GLY B 7 5 3 HELIX 7 7 ARG B 12 ARG B 16 5 5 HELIX 8 8 THR B 45 ASN B 63 1 19 HELIX 9 9 ALA B 94 ASN B 99 1 6 HELIX 10 10 PRO B 117 LEU B 134 1 18 HELIX 11 11 ARG B 147 VAL B 149 5 3 HELIX 12 12 GLY B 156 GLN B 164 1 9 HELIX 13 13 THR C 45 ASN C 63 1 19 HELIX 14 14 TRP C 98 PRO C 100 5 3 HELIX 15 15 PRO C 117 LEU C 134 1 18 HELIX 16 16 ARG C 147 VAL C 149 5 3 HELIX 17 17 GLY C 156 GLN C 164 1 9 HELIX 18 18 THR D 45 ASN D 63 1 19 HELIX 19 19 TRP D 98 PRO D 100 5 3 HELIX 20 20 PRO D 117 LEU D 134 1 18 HELIX 21 21 HIS D 146 GLN D 150 1 5 HELIX 22 22 GLY D 156 GLN D 164 1 9 SHEET 1 A 6 ILE A 9 VAL A 10 0 SHEET 2 A 6 VAL A 81 GLU A 83 1 O VAL A 81 N VAL A 10 SHEET 3 A 6 PHE A 73 ILE A 75 -1 N LEU A 74 O TYR A 82 SHEET 4 A 6 SER A 102 PHE A 107 1 O SER A 106 N ILE A 75 SHEET 5 A 6 VAL A 30 HIS A 37 1 N SER A 36 O PHE A 107 SHEET 6 A 6 LEU A 137 GLY A 145 1 O LYS A 144 N VAL A 33 SHEET 1 B 6 ILE B 9 VAL B 10 0 SHEET 2 B 6 VAL B 81 GLU B 83 1 O VAL B 81 N VAL B 10 SHEET 3 B 6 PHE B 73 ILE B 75 -1 N LEU B 74 O TYR B 82 SHEET 4 B 6 SER B 102 PHE B 107 1 O SER B 106 N ILE B 75 SHEET 5 B 6 VAL B 30 HIS B 37 1 N SER B 36 O PHE B 107 SHEET 6 B 6 LEU B 137 GLY B 145 1 O ARG B 138 N VAL B 30 SHEET 1 C 6 ILE C 9 VAL C 10 0 SHEET 2 C 6 VAL C 81 GLU C 83 1 O VAL C 81 N VAL C 10 SHEET 3 C 6 PHE C 73 ILE C 75 -1 N LEU C 74 O TYR C 82 SHEET 4 C 6 SER C 102 PHE C 107 1 O SER C 106 N ILE C 75 SHEET 5 C 6 VAL C 30 HIS C 37 1 N SER C 36 O PHE C 107 SHEET 6 C 6 LEU C 137 GLY C 145 1 O ARG C 138 N VAL C 30 SHEET 1 D 6 ILE D 9 VAL D 10 0 SHEET 2 D 6 VAL D 81 GLU D 83 1 O VAL D 81 N VAL D 10 SHEET 3 D 6 PHE D 73 ILE D 75 -1 N LEU D 74 O TYR D 82 SHEET 4 D 6 SER D 102 PHE D 107 1 O SER D 106 N ILE D 75 SHEET 5 D 6 VAL D 30 HIS D 37 1 N SER D 36 O PHE D 107 SHEET 6 D 6 LEU D 137 GLY D 145 1 O ARG D 138 N VAL D 30 SSBOND 1 CYS A 6 CYS A 130 1555 1555 2.03 SSBOND 2 CYS A 22 CYS A 67 1555 1555 2.04 SSBOND 3 CYS A 43 CYS A 49 1555 1555 2.05 SSBOND 4 CYS B 6 CYS B 130 1555 1555 2.04 SSBOND 5 CYS B 22 CYS B 67 1555 1555 2.03 SSBOND 6 CYS B 43 CYS B 49 1555 1555 2.05 SSBOND 7 CYS C 22 CYS C 67 1555 1555 2.04 SSBOND 8 CYS C 43 CYS C 49 1555 1555 2.06 SSBOND 9 CYS D 6 CYS D 130 1555 1555 2.04 SSBOND 10 CYS D 22 CYS D 67 1555 1555 2.03 SSBOND 11 CYS D 43 CYS D 49 1555 1555 2.04 CISPEP 1 ARG A 28 PRO A 29 0 -0.29 CISPEP 2 SER A 154 PRO A 155 0 -2.73 CISPEP 3 ARG B 28 PRO B 29 0 -0.14 CISPEP 4 SER B 154 PRO B 155 0 -1.00 CISPEP 5 ARG C 28 PRO C 29 0 0.33 CISPEP 6 SER C 154 PRO C 155 0 0.15 CISPEP 7 ARG D 28 PRO D 29 0 0.26 CISPEP 8 SER D 154 PRO D 155 0 1.47 SITE 1 AC1 31 ARG A 31 TYR A 32 ASN A 140 GLU A 142 SITE 2 AC1 31 ARG A 170 ALA A 171 GLU C 24 LEU C 64 SITE 3 AC1 31 TRP C 66 CYS C 67 LYS C 90 ALA C 92 SITE 4 AC1 31 HIS C 93 GLY C 95 ASN C 99 GLN C 150 SITE 5 AC1 31 HOH C 174 HOH C 322 HOH C 346 ALA D 94 SITE 6 AC1 31 GLY D 95 PRO D 96 THR D 97 TRP D 98 SITE 7 AC1 31 LYS D 144 ASP D 148 VAL D 149 GLN D 150 SITE 8 AC1 31 PRO D 151 HOH D 433 HOH D 471 SITE 1 AC2 8 PRO C 151 THR C 152 HIS D 37 ALA D 39 SITE 2 AC2 8 TYR D 71 HIS D 146 TLA D 173 HOH D 228 SITE 1 AC3 10 HIS C 37 ALA C 39 THR C 152 LEU C 153 SITE 2 AC3 10 HIS D 37 THR D 152 LEU D 153 SER D 154 SITE 3 AC3 10 GOL D 172 HOH D 197 CRYST1 88.103 101.490 162.800 90.00 90.00 90.00 I 2 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006143 0.00000