data_3O4Q # _entry.id 3O4Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3O4Q pdb_00003o4q 10.2210/pdb3o4q/pdb RCSB RCSB060662 ? ? WWPDB D_1000060662 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3O4N _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3O4Q _pdbx_database_status.recvd_initial_deposition_date 2010-07-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ballandras, A.' 1 'Robert, X.' 2 'Gouet, P.' 3 # _citation.id primary _citation.title ;A crystal structure of the catalytic core domain of an avian sarcoma and leukemia virus integrase suggests an alternate dimeric assembly. ; _citation.journal_abbrev 'Plos One' _citation.journal_volume 6 _citation.page_first e23032 _citation.page_last e23032 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1932-6203 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21857987 _citation.pdbx_database_id_DOI 10.1371/journal.pone.0023032 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ballandras, A.' 1 ? primary 'Moreau, K.' 2 ? primary 'Robert, X.' 3 ? primary 'Confort, M.P.' 4 ? primary 'Merceron, R.' 5 ? primary 'Haser, R.' 6 ? primary 'Ronfort, C.' 7 ? primary 'Gouet, P.' 8 ? # _cell.entry_id 3O4Q _cell.length_a 65.490 _cell.length_b 65.490 _cell.length_c 79.160 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3O4Q _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man integrase 16401.818 1 ? A182T 'INRAV1 CCD, residues 625-771' ? 2 non-polymer syn 'CITRATE ANION' 189.100 1 ? ? ? ? 3 water nat water 18.015 122 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSGRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGS(OCY) FTSKSTREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHF ; _entity_poly.pdbx_seq_one_letter_code_can ;GSGRGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSK STREWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPTSKQGELLAKAMYALNHF ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 GLY n 1 4 ARG n 1 5 GLY n 1 6 LEU n 1 7 GLY n 1 8 PRO n 1 9 LEU n 1 10 GLN n 1 11 ILE n 1 12 TRP n 1 13 GLN n 1 14 THR n 1 15 ASP n 1 16 PHE n 1 17 THR n 1 18 LEU n 1 19 GLU n 1 20 PRO n 1 21 ARG n 1 22 MET n 1 23 ALA n 1 24 PRO n 1 25 ARG n 1 26 SER n 1 27 TRP n 1 28 LEU n 1 29 ALA n 1 30 VAL n 1 31 THR n 1 32 VAL n 1 33 ASP n 1 34 THR n 1 35 ALA n 1 36 SER n 1 37 SER n 1 38 ALA n 1 39 ILE n 1 40 VAL n 1 41 VAL n 1 42 THR n 1 43 GLN n 1 44 HIS n 1 45 GLY n 1 46 ARG n 1 47 VAL n 1 48 THR n 1 49 SER n 1 50 VAL n 1 51 ALA n 1 52 ALA n 1 53 GLN n 1 54 HIS n 1 55 HIS n 1 56 TRP n 1 57 ALA n 1 58 THR n 1 59 ALA n 1 60 ILE n 1 61 ALA n 1 62 VAL n 1 63 LEU n 1 64 GLY n 1 65 ARG n 1 66 PRO n 1 67 LYS n 1 68 ALA n 1 69 ILE n 1 70 LYS n 1 71 THR n 1 72 ASP n 1 73 ASN n 1 74 GLY n 1 75 SER n 1 76 OCY n 1 77 PHE n 1 78 THR n 1 79 SER n 1 80 LYS n 1 81 SER n 1 82 THR n 1 83 ARG n 1 84 GLU n 1 85 TRP n 1 86 LEU n 1 87 ALA n 1 88 ARG n 1 89 TRP n 1 90 GLY n 1 91 ILE n 1 92 ALA n 1 93 HIS n 1 94 THR n 1 95 THR n 1 96 GLY n 1 97 ILE n 1 98 PRO n 1 99 GLY n 1 100 ASN n 1 101 SER n 1 102 GLN n 1 103 GLY n 1 104 GLN n 1 105 ALA n 1 106 MET n 1 107 VAL n 1 108 GLU n 1 109 ARG n 1 110 ALA n 1 111 ASN n 1 112 ARG n 1 113 LEU n 1 114 LEU n 1 115 LYS n 1 116 ASP n 1 117 LYS n 1 118 ILE n 1 119 ARG n 1 120 VAL n 1 121 LEU n 1 122 ALA n 1 123 GLU n 1 124 GLY n 1 125 ASP n 1 126 GLY n 1 127 PHE n 1 128 MET n 1 129 LYS n 1 130 ARG n 1 131 ILE n 1 132 PRO n 1 133 THR n 1 134 SER n 1 135 LYS n 1 136 GLN n 1 137 GLY n 1 138 GLU n 1 139 LEU n 1 140 LEU n 1 141 ALA n 1 142 LYS n 1 143 ALA n 1 144 MET n 1 145 TYR n 1 146 ALA n 1 147 LEU n 1 148 ASN n 1 149 HIS n 1 150 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rous sarcoma virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11886 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pETG10a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q4ZJZ6_RSVSR _struct_ref.pdbx_db_accession Q4ZJZ6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RGLGPLQIWQTDFTLEPRMAPRSWLAVTVDTASSAIVVTQHGRVTSVAAQHHWATAIAVLGRPKAIKTDNGSCFTSKSTR EWLARWGIAHTTGIPGNSQGQAMVERANRLLKDKIRVLAEGDGFMKRIPASKQGELLAKAMYALNHF ; _struct_ref.pdbx_align_begin 625 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3O4Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 150 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q4ZJZ6 _struct_ref_seq.db_align_beg 625 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 771 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 53 _struct_ref_seq.pdbx_auth_seq_align_end 199 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3O4Q GLY A 1 ? UNP Q4ZJZ6 ? ? 'expression tag' 50 1 1 3O4Q SER A 2 ? UNP Q4ZJZ6 ? ? 'expression tag' 51 2 1 3O4Q GLY A 3 ? UNP Q4ZJZ6 ? ? 'expression tag' 52 3 1 3O4Q THR A 133 ? UNP Q4ZJZ6 ALA 754 'engineered mutation' 182 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 FLC non-polymer . 'CITRATE ANION' ? 'C6 H5 O7 -3' 189.100 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OCY 'L-peptide linking' n HYDROXYETHYLCYSTEINE ? 'C5 H11 N O3 S' 165.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3O4Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.59 _exptl_crystal.density_percent_sol 52.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_details '20% (w/v) PEG 4000, 10% isopropanol and 0.1 M Na citrate pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 290K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-06-10 _diffrn_detector.details 'Synchrotron optics' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Synchrotron beam' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979680 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM30A' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM30A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.979680 # _reflns.entry_id 3O4Q _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.55 _reflns.number_obs 25642 _reflns.number_all 24970 _reflns.percent_possible_obs 97.38 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.049 _reflns.pdbx_netI_over_sigmaI 20.94 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.60 _reflns_shell.percent_possible_all 95.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.256 _reflns_shell.meanI_over_sigI_obs 5.36 _reflns_shell.pdbx_redundancy 3.5 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2278 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3O4Q _refine.ls_number_reflns_obs 23721 _refine.ls_number_reflns_all 23721 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.99 _refine.ls_d_res_high 1.55 _refine.ls_percent_reflns_obs 100.00 _refine.ls_R_factor_obs 0.16646 _refine.ls_R_factor_all 0.16646 _refine.ls_R_factor_R_work 0.16411 _refine.ls_R_factor_R_free 0.21125 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1249 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.958 _refine.correlation_coeff_Fo_to_Fc_free 0.935 _refine.B_iso_mean 15.176 _refine.aniso_B[1][1] 0.05 _refine.aniso_B[2][2] 0.05 _refine.aniso_B[3][3] -0.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.075 _refine.overall_SU_ML 0.039 _refine.overall_SU_B 2.276 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1068 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 122 _refine_hist.number_atoms_total 1203 _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 19.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.026 0.021 ? 1114 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.722 1.946 ? 1511 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.603 5.000 ? 137 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.124 21.818 ? 44 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.401 15.000 ? 189 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.545 15.000 ? 11 'X-RAY DIFFRACTION' ? r_chiral_restr 0.132 0.200 ? 172 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.021 ? 824 'X-RAY DIFFRACTION' ? r_mcbond_it 2.443 1.500 ? 689 'X-RAY DIFFRACTION' ? r_mcangle_it 3.574 2.000 ? 1109 'X-RAY DIFFRACTION' ? r_scbond_it 5.727 3.000 ? 425 'X-RAY DIFFRACTION' ? r_scangle_it 8.069 4.500 ? 402 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.864 3.000 ? 1114 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.550 _refine_ls_shell.d_res_low 1.590 _refine_ls_shell.number_reflns_R_work 1655 _refine_ls_shell.R_factor_R_work 0.197 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.277 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 87 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3O4Q _struct.title 'Crystal structure of the Rous Associated Virus Integrase catalytic domain A182T in citrate buffer pH 6.2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O4Q _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'DNA integration process, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? ALA A 23 ? PRO A 69 ALA A 72 5 ? 4 HELX_P HELX_P2 2 THR A 48 ? GLY A 64 ? THR A 97 GLY A 113 1 ? 17 HELX_P HELX_P3 3 GLY A 74 ? SER A 79 ? GLY A 123 SER A 128 1 ? 6 HELX_P HELX_P4 4 SER A 79 ? TRP A 89 ? SER A 128 TRP A 138 1 ? 11 HELX_P HELX_P5 5 GLN A 104 ? ASP A 125 ? GLN A 153 ASP A 174 1 ? 22 HELX_P HELX_P6 6 PRO A 132 ? SER A 134 ? PRO A 181 SER A 183 5 ? 3 HELX_P HELX_P7 7 LYS A 135 ? HIS A 149 ? LYS A 184 HIS A 198 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A SER 75 C ? ? ? 1_555 A OCY 76 N ? ? A SER 124 A OCY 125 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale2 covale both ? A OCY 76 C ? ? ? 1_555 A PHE 77 N ? ? A OCY 125 A PHE 126 1_555 ? ? ? ? ? ? ? 1.331 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 23 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 72 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 24 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 73 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 6.21 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 39 ? HIS A 44 ? ILE A 88 HIS A 93 A 2 TRP A 27 ? ASP A 33 ? TRP A 76 ASP A 82 A 3 ILE A 11 ? LEU A 18 ? ILE A 60 LEU A 67 A 4 ALA A 68 ? LYS A 70 ? ALA A 117 LYS A 119 A 5 ALA A 92 ? THR A 94 ? ALA A 141 THR A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 40 ? O VAL A 89 N THR A 31 ? N THR A 80 A 2 3 O VAL A 30 ? O VAL A 79 N ASP A 15 ? N ASP A 64 A 3 4 N TRP A 12 ? N TRP A 61 O LYS A 70 ? O LYS A 119 A 4 5 N ILE A 69 ? N ILE A 118 O THR A 94 ? O THR A 143 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FLC _struct_site.pdbx_auth_seq_id 2000 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE FLC A 2000' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ARG A 83 ? ARG A 132 . ? 6_566 ? 2 AC1 9 ARG A 130 ? ARG A 179 . ? 1_555 ? 3 AC1 9 PRO A 132 ? PRO A 181 . ? 1_555 ? 4 AC1 9 THR A 133 ? THR A 182 . ? 1_555 ? 5 AC1 9 SER A 134 ? SER A 183 . ? 1_555 ? 6 AC1 9 HOH C . ? HOH A 398 . ? 6_566 ? 7 AC1 9 HOH C . ? HOH A 400 . ? 6_566 ? 8 AC1 9 HOH C . ? HOH A 427 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 428 . ? 1_555 ? # _database_PDB_matrix.entry_id 3O4Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3O4Q _atom_sites.fract_transf_matrix[1][1] 0.015270 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015270 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012633 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 50 ? ? ? A . n A 1 2 SER 2 51 ? ? ? A . n A 1 3 GLY 3 52 ? ? ? A . n A 1 4 ARG 4 53 ? ? ? A . n A 1 5 GLY 5 54 ? ? ? A . n A 1 6 LEU 6 55 55 LEU LEU A . n A 1 7 GLY 7 56 56 GLY GLY A . n A 1 8 PRO 8 57 57 PRO PRO A . n A 1 9 LEU 9 58 58 LEU LEU A . n A 1 10 GLN 10 59 59 GLN GLN A . n A 1 11 ILE 11 60 60 ILE ILE A . n A 1 12 TRP 12 61 61 TRP TRP A . n A 1 13 GLN 13 62 62 GLN GLN A . n A 1 14 THR 14 63 63 THR THR A . n A 1 15 ASP 15 64 64 ASP ASP A . n A 1 16 PHE 16 65 65 PHE PHE A . n A 1 17 THR 17 66 66 THR THR A . n A 1 18 LEU 18 67 67 LEU LEU A . n A 1 19 GLU 19 68 68 GLU GLU A . n A 1 20 PRO 20 69 69 PRO PRO A . n A 1 21 ARG 21 70 70 ARG ARG A . n A 1 22 MET 22 71 71 MET MET A . n A 1 23 ALA 23 72 72 ALA ALA A . n A 1 24 PRO 24 73 73 PRO PRO A . n A 1 25 ARG 25 74 74 ARG ARG A . n A 1 26 SER 26 75 75 SER SER A . n A 1 27 TRP 27 76 76 TRP TRP A . n A 1 28 LEU 28 77 77 LEU LEU A . n A 1 29 ALA 29 78 78 ALA ALA A . n A 1 30 VAL 30 79 79 VAL VAL A . n A 1 31 THR 31 80 80 THR THR A . n A 1 32 VAL 32 81 81 VAL VAL A . n A 1 33 ASP 33 82 82 ASP ASP A . n A 1 34 THR 34 83 83 THR THR A . n A 1 35 ALA 35 84 84 ALA ALA A . n A 1 36 SER 36 85 85 SER SER A . n A 1 37 SER 37 86 86 SER SER A . n A 1 38 ALA 38 87 87 ALA ALA A . n A 1 39 ILE 39 88 88 ILE ILE A . n A 1 40 VAL 40 89 89 VAL VAL A . n A 1 41 VAL 41 90 90 VAL VAL A . n A 1 42 THR 42 91 91 THR THR A . n A 1 43 GLN 43 92 92 GLN GLN A . n A 1 44 HIS 44 93 93 HIS HIS A . n A 1 45 GLY 45 94 94 GLY GLY A . n A 1 46 ARG 46 95 95 ARG ARG A . n A 1 47 VAL 47 96 96 VAL VAL A . n A 1 48 THR 48 97 97 THR THR A . n A 1 49 SER 49 98 98 SER SER A . n A 1 50 VAL 50 99 99 VAL VAL A . n A 1 51 ALA 51 100 100 ALA ALA A . n A 1 52 ALA 52 101 101 ALA ALA A . n A 1 53 GLN 53 102 102 GLN GLN A . n A 1 54 HIS 54 103 103 HIS HIS A . n A 1 55 HIS 55 104 104 HIS HIS A . n A 1 56 TRP 56 105 105 TRP TRP A . n A 1 57 ALA 57 106 106 ALA ALA A . n A 1 58 THR 58 107 107 THR THR A . n A 1 59 ALA 59 108 108 ALA ALA A . n A 1 60 ILE 60 109 109 ILE ILE A . n A 1 61 ALA 61 110 110 ALA ALA A . n A 1 62 VAL 62 111 111 VAL VAL A . n A 1 63 LEU 63 112 112 LEU LEU A . n A 1 64 GLY 64 113 113 GLY GLY A . n A 1 65 ARG 65 114 114 ARG ARG A . n A 1 66 PRO 66 115 115 PRO PRO A . n A 1 67 LYS 67 116 116 LYS LYS A . n A 1 68 ALA 68 117 117 ALA ALA A . n A 1 69 ILE 69 118 118 ILE ILE A . n A 1 70 LYS 70 119 119 LYS LYS A . n A 1 71 THR 71 120 120 THR THR A . n A 1 72 ASP 72 121 121 ASP ASP A . n A 1 73 ASN 73 122 122 ASN ASN A . n A 1 74 GLY 74 123 123 GLY GLY A . n A 1 75 SER 75 124 124 SER SER A . n A 1 76 OCY 76 125 125 OCY OCY A . n A 1 77 PHE 77 126 126 PHE PHE A . n A 1 78 THR 78 127 127 THR THR A . n A 1 79 SER 79 128 128 SER SER A . n A 1 80 LYS 80 129 129 LYS LYS A . n A 1 81 SER 81 130 130 SER SER A . n A 1 82 THR 82 131 131 THR THR A . n A 1 83 ARG 83 132 132 ARG ARG A . n A 1 84 GLU 84 133 133 GLU GLU A . n A 1 85 TRP 85 134 134 TRP TRP A . n A 1 86 LEU 86 135 135 LEU LEU A . n A 1 87 ALA 87 136 136 ALA ALA A . n A 1 88 ARG 88 137 137 ARG ARG A . n A 1 89 TRP 89 138 138 TRP TRP A . n A 1 90 GLY 90 139 139 GLY GLY A . n A 1 91 ILE 91 140 140 ILE ILE A . n A 1 92 ALA 92 141 141 ALA ALA A . n A 1 93 HIS 93 142 142 HIS HIS A . n A 1 94 THR 94 143 143 THR THR A . n A 1 95 THR 95 144 144 THR THR A . n A 1 96 GLY 96 145 ? ? ? A . n A 1 97 ILE 97 146 ? ? ? A . n A 1 98 PRO 98 147 ? ? ? A . n A 1 99 GLY 99 148 ? ? ? A . n A 1 100 ASN 100 149 ? ? ? A . n A 1 101 SER 101 150 ? ? ? A . n A 1 102 GLN 102 151 ? ? ? A . n A 1 103 GLY 103 152 ? ? ? A . n A 1 104 GLN 104 153 153 GLN GLN A . n A 1 105 ALA 105 154 154 ALA ALA A . n A 1 106 MET 106 155 155 MET MET A . n A 1 107 VAL 107 156 156 VAL VAL A . n A 1 108 GLU 108 157 157 GLU GLU A . n A 1 109 ARG 109 158 158 ARG ARG A . n A 1 110 ALA 110 159 159 ALA ALA A . n A 1 111 ASN 111 160 160 ASN ASN A . n A 1 112 ARG 112 161 161 ARG ARG A . n A 1 113 LEU 113 162 162 LEU LEU A . n A 1 114 LEU 114 163 163 LEU LEU A . n A 1 115 LYS 115 164 164 LYS LYS A . n A 1 116 ASP 116 165 165 ASP ASP A . n A 1 117 LYS 117 166 166 LYS LYS A . n A 1 118 ILE 118 167 167 ILE ILE A . n A 1 119 ARG 119 168 168 ARG ARG A . n A 1 120 VAL 120 169 169 VAL VAL A . n A 1 121 LEU 121 170 170 LEU LEU A . n A 1 122 ALA 122 171 171 ALA ALA A . n A 1 123 GLU 123 172 172 GLU GLU A . n A 1 124 GLY 124 173 173 GLY GLY A . n A 1 125 ASP 125 174 174 ASP ASP A . n A 1 126 GLY 126 175 175 GLY GLY A . n A 1 127 PHE 127 176 176 PHE PHE A . n A 1 128 MET 128 177 177 MET MET A . n A 1 129 LYS 129 178 178 LYS LYS A . n A 1 130 ARG 130 179 179 ARG ARG A . n A 1 131 ILE 131 180 180 ILE ILE A . n A 1 132 PRO 132 181 181 PRO PRO A . n A 1 133 THR 133 182 182 THR THR A . n A 1 134 SER 134 183 183 SER SER A . n A 1 135 LYS 135 184 184 LYS LYS A . n A 1 136 GLN 136 185 185 GLN GLN A . n A 1 137 GLY 137 186 186 GLY GLY A . n A 1 138 GLU 138 187 187 GLU GLU A . n A 1 139 LEU 139 188 188 LEU LEU A . n A 1 140 LEU 140 189 189 LEU LEU A . n A 1 141 ALA 141 190 190 ALA ALA A . n A 1 142 LYS 142 191 191 LYS LYS A . n A 1 143 ALA 143 192 192 ALA ALA A . n A 1 144 MET 144 193 193 MET MET A . n A 1 145 TYR 145 194 194 TYR TYR A . n A 1 146 ALA 146 195 195 ALA ALA A . n A 1 147 LEU 147 196 196 LEU LEU A . n A 1 148 ASN 148 197 197 ASN ASN A . n A 1 149 HIS 149 198 198 HIS HIS A . n A 1 150 PHE 150 199 199 PHE ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC 1 2000 2000 FLC FLC A . C 3 HOH 1 200 200 HOH HOH A . C 3 HOH 2 201 201 HOH HOH A . C 3 HOH 3 202 202 HOH HOH A . C 3 HOH 4 203 203 HOH HOH A . C 3 HOH 5 204 204 HOH HOH A . C 3 HOH 6 205 205 HOH HOH A . C 3 HOH 7 206 206 HOH HOH A . C 3 HOH 8 207 207 HOH HOH A . C 3 HOH 9 210 210 HOH HOH A . C 3 HOH 10 214 214 HOH HOH A . C 3 HOH 11 215 215 HOH HOH A . C 3 HOH 12 216 216 HOH HOH A . C 3 HOH 13 217 217 HOH HOH A . C 3 HOH 14 218 218 HOH HOH A . C 3 HOH 15 221 221 HOH HOH A . C 3 HOH 16 222 222 HOH HOH A . C 3 HOH 17 223 223 HOH HOH A . C 3 HOH 18 224 224 HOH HOH A . C 3 HOH 19 227 227 HOH HOH A . C 3 HOH 20 228 228 HOH HOH A . C 3 HOH 21 230 230 HOH HOH A . C 3 HOH 22 231 231 HOH HOH A . C 3 HOH 23 232 232 HOH HOH A . C 3 HOH 24 234 234 HOH HOH A . C 3 HOH 25 235 235 HOH HOH A . C 3 HOH 26 236 236 HOH HOH A . C 3 HOH 27 237 237 HOH HOH A . C 3 HOH 28 238 238 HOH HOH A . C 3 HOH 29 242 242 HOH HOH A . C 3 HOH 30 243 243 HOH HOH A . C 3 HOH 31 245 245 HOH HOH A . C 3 HOH 32 248 248 HOH HOH A . C 3 HOH 33 255 255 HOH HOH A . C 3 HOH 34 258 258 HOH HOH A . C 3 HOH 35 261 261 HOH HOH A . C 3 HOH 36 262 262 HOH HOH A . C 3 HOH 37 270 270 HOH HOH A . C 3 HOH 38 271 271 HOH HOH A . C 3 HOH 39 274 274 HOH HOH A . C 3 HOH 40 283 283 HOH HOH A . C 3 HOH 41 284 284 HOH HOH A . C 3 HOH 42 285 285 HOH HOH A . C 3 HOH 43 286 286 HOH HOH A . C 3 HOH 44 287 287 HOH HOH A . C 3 HOH 45 289 289 HOH HOH A . C 3 HOH 46 290 290 HOH HOH A . C 3 HOH 47 293 293 HOH HOH A . C 3 HOH 48 296 296 HOH HOH A . C 3 HOH 49 304 304 HOH HOH A . C 3 HOH 50 308 308 HOH HOH A . C 3 HOH 51 340 340 HOH HOH A . C 3 HOH 52 343 343 HOH HOH A . C 3 HOH 53 350 350 HOH HOH A . C 3 HOH 54 357 357 HOH HOH A . C 3 HOH 55 358 358 HOH HOH A . C 3 HOH 56 359 359 HOH HOH A . C 3 HOH 57 360 360 HOH HOH A . C 3 HOH 58 362 362 HOH HOH A . C 3 HOH 59 364 364 HOH HOH A . C 3 HOH 60 365 365 HOH HOH A . C 3 HOH 61 366 366 HOH HOH A . C 3 HOH 62 367 367 HOH HOH A . C 3 HOH 63 368 368 HOH HOH A . C 3 HOH 64 370 370 HOH HOH A . C 3 HOH 65 371 371 HOH HOH A . C 3 HOH 66 373 373 HOH HOH A . C 3 HOH 67 374 374 HOH HOH A . C 3 HOH 68 375 375 HOH HOH A . C 3 HOH 69 376 376 HOH HOH A . C 3 HOH 70 380 380 HOH HOH A . C 3 HOH 71 381 381 HOH HOH A . C 3 HOH 72 383 383 HOH HOH A . C 3 HOH 73 385 385 HOH HOH A . C 3 HOH 74 387 387 HOH HOH A . C 3 HOH 75 388 388 HOH HOH A . C 3 HOH 76 390 390 HOH HOH A . C 3 HOH 77 391 391 HOH HOH A . C 3 HOH 78 392 392 HOH HOH A . C 3 HOH 79 393 393 HOH HOH A . C 3 HOH 80 394 394 HOH HOH A . C 3 HOH 81 398 398 HOH HOH A . C 3 HOH 82 399 399 HOH HOH A . C 3 HOH 83 400 400 HOH HOH A . C 3 HOH 84 401 401 HOH HOH A . C 3 HOH 85 402 402 HOH HOH A . C 3 HOH 86 405 405 HOH HOH A . C 3 HOH 87 406 406 HOH HOH A . C 3 HOH 88 408 408 HOH HOH A . C 3 HOH 89 410 410 HOH HOH A . C 3 HOH 90 411 411 HOH HOH A . C 3 HOH 91 414 414 HOH HOH A . C 3 HOH 92 415 415 HOH HOH A . C 3 HOH 93 417 417 HOH HOH A . C 3 HOH 94 419 419 HOH HOH A . C 3 HOH 95 421 421 HOH HOH A . C 3 HOH 96 423 423 HOH HOH A . C 3 HOH 97 424 424 HOH HOH A . C 3 HOH 98 427 427 HOH HOH A . C 3 HOH 99 428 428 HOH HOH A . C 3 HOH 100 429 429 HOH HOH A . C 3 HOH 101 432 432 HOH HOH A . C 3 HOH 102 433 433 HOH HOH A . C 3 HOH 103 434 434 HOH HOH A . C 3 HOH 104 439 439 HOH HOH A . C 3 HOH 105 440 440 HOH HOH A . C 3 HOH 106 444 444 HOH HOH A . C 3 HOH 107 446 446 HOH HOH A . C 3 HOH 108 449 449 HOH HOH A . C 3 HOH 109 450 450 HOH HOH A . C 3 HOH 110 451 451 HOH HOH A . C 3 HOH 111 452 452 HOH HOH A . C 3 HOH 112 453 453 HOH HOH A . C 3 HOH 113 454 454 HOH HOH A . C 3 HOH 114 455 455 HOH HOH A . C 3 HOH 115 456 456 HOH HOH A . C 3 HOH 116 459 459 HOH HOH A . C 3 HOH 117 460 460 HOH HOH A . C 3 HOH 118 461 461 HOH HOH A . C 3 HOH 119 464 464 HOH HOH A . C 3 HOH 120 465 465 HOH HOH A . C 3 HOH 121 467 467 HOH HOH A . C 3 HOH 122 468 468 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id OCY _pdbx_struct_mod_residue.label_seq_id 76 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id OCY _pdbx_struct_mod_residue.auth_seq_id 125 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id CYS _pdbx_struct_mod_residue.details HYDROXYETHYLCYSTEINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2040 ? 1 MORE -8 ? 1 'SSA (A^2)' 13780 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 79.1600000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-31 2 'Structure model' 1 1 2012-01-11 3 'Structure model' 1 2 2021-10-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_conn 3 3 'Structure model' struct_ref_seq_dif 4 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' 5 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 REFMAC refinement 5.5.0109 ? 2 XDS 'data reduction' . ? 3 XSCALE 'data scaling' . ? 4 REFMAC phasing 5.5.0109 ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A GLN 92 ? ? CG A GLN 92 ? ? 1.293 1.521 -0.228 0.027 N 2 1 CB A VAL 96 ? ? CG2 A VAL 96 ? ? 1.342 1.524 -0.182 0.021 N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 MET _pdbx_validate_rmsd_angle.auth_seq_id_1 155 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 SD _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 MET _pdbx_validate_rmsd_angle.auth_seq_id_2 155 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CE _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 MET _pdbx_validate_rmsd_angle.auth_seq_id_3 155 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 89.63 _pdbx_validate_rmsd_angle.angle_target_value 100.20 _pdbx_validate_rmsd_angle.angle_deviation -10.57 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 178 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -130.11 _pdbx_validate_torsion.psi -127.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A PHE 199 ? CG ? A PHE 150 CG 2 1 Y 1 A PHE 199 ? CD1 ? A PHE 150 CD1 3 1 Y 1 A PHE 199 ? CD2 ? A PHE 150 CD2 4 1 Y 1 A PHE 199 ? CE1 ? A PHE 150 CE1 5 1 Y 1 A PHE 199 ? CE2 ? A PHE 150 CE2 6 1 Y 1 A PHE 199 ? CZ ? A PHE 150 CZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 50 ? A GLY 1 2 1 Y 1 A SER 51 ? A SER 2 3 1 Y 1 A GLY 52 ? A GLY 3 4 1 Y 1 A ARG 53 ? A ARG 4 5 1 Y 1 A GLY 54 ? A GLY 5 6 1 Y 1 A GLY 145 ? A GLY 96 7 1 Y 1 A ILE 146 ? A ILE 97 8 1 Y 1 A PRO 147 ? A PRO 98 9 1 Y 1 A GLY 148 ? A GLY 99 10 1 Y 1 A ASN 149 ? A ASN 100 11 1 Y 1 A SER 150 ? A SER 101 12 1 Y 1 A GLN 151 ? A GLN 102 13 1 Y 1 A GLY 152 ? A GLY 103 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CITRATE ANION' FLC 3 water HOH #