HEADER TRANSFERASE 28-JUL-10 3O59 TITLE DNA POLYMERASE D LARGE SUBUNIT DP2(1-300) FROM PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE II LARGE SUBUNIT; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: DP2 SUBUNIT, 1ST PART, RESIDUES 1-300; COMPND 5 SYNONYM: DNA POLYMERASE D LARGE SUBUNIT, POL II; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 GENE: PH0121; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS ALPHA HELICAL STRUCTURE, DNA POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.YOKOYAMA,Y.SHEN,I.MATSUI REVDAT 2 09-FEB-11 3O59 1 JRNL REVDAT 1 05-JAN-11 3O59 0 JRNL AUTH I.MATSUI,Y.URUSHIBATA,Y.SHEN,E.MATSUI,H.YOKOYAMA JRNL TITL NOVEL STRUCTURE OF AN N-TERMINAL DOMAIN THAT IS CRUCIAL FOR JRNL TITL 2 THE DIMERIC ASSEMBLY AND DNA-BINDING OF AN ARCHAEAL DNA JRNL TITL 3 POLYMERASE D LARGE SUBUNIT FROM PYROCOCCUS HORIKOSHII JRNL REF FEBS LETT. V. 585 452 2011 JRNL REFN ISSN 0014-5793 JRNL PMID 21192935 JRNL DOI 10.1016/J.FEBSLET.2010.12.040 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.SHEN,X.-F.TANG,I.MATSUI REMARK 1 TITL SUBUNIT INTERACTION AND REGULATION OF ACTIVITY THROUGH REMARK 1 TITL 2 TERMINAL DOMAINS OF THE FAMILY D DNA POLYMERASE FROM REMARK 1 TITL 3 PYROCOCCUS HORIKOSHII REMARK 1 REF J.BIOL.CHEM. V. 278 21247 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12654919 REMARK 1 DOI 10.1074/JBC.M212286200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1362 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 831 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1909 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23000 REMARK 3 B22 (A**2) : 0.23000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.322 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.434 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1939 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2614 ; 1.774 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 5.759 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;34.133 ;24.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 365 ;17.856 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1435 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1206 ; 0.989 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1940 ; 1.805 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 733 ; 3.127 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 674 ; 5.012 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O59 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB060681. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788, 0.9793, 0.9900 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 27.300 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 77.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.23300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 14.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 10000, 0.1M HEPES-NAOH, 40MM REMARK 280 GUANIDINE-HCL, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.66750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.02100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.02100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 130.00125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.02100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.02100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.33375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.02100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.02100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 130.00125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.02100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.02100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.33375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 86.66750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE X 1 REMARK 465 VAL X 2 REMARK 465 LEU X 3 REMARK 465 MSE X 4 REMARK 465 GLU X 5 REMARK 465 LEU X 6 REMARK 465 PRO X 7 REMARK 465 LYS X 8 REMARK 465 GLU X 9 REMARK 465 MSE X 10 REMARK 465 GLU X 11 REMARK 465 GLU X 12 REMARK 465 TYR X 13 REMARK 465 PHE X 14 REMARK 465 SER X 15 REMARK 465 MSE X 16 REMARK 465 LEU X 17 REMARK 465 GLN X 18 REMARK 465 ARG X 19 REMARK 465 GLU X 20 REMARK 465 ILE X 21 REMARK 465 ASP X 22 REMARK 465 LYS X 23 REMARK 465 ALA X 24 REMARK 465 TYR X 25 REMARK 465 GLU X 26 REMARK 465 ILE X 27 REMARK 465 ALA X 28 REMARK 465 LYS X 29 REMARK 465 LYS X 30 REMARK 465 ALA X 31 REMARK 465 ARG X 32 REMARK 465 ALA X 33 REMARK 465 GLN X 34 REMARK 465 GLY X 35 REMARK 465 LYS X 36 REMARK 465 ASP X 37 REMARK 465 PRO X 38 REMARK 465 SER X 39 REMARK 465 LEU X 40 REMARK 465 ASP X 41 REMARK 465 VAL X 42 REMARK 465 GLU X 43 REMARK 465 ILE X 44 REMARK 465 PRO X 45 REMARK 465 GLN X 46 REMARK 465 ALA X 47 REMARK 465 GLU X 292 REMARK 465 GLU X 293 REMARK 465 GLU X 294 REMARK 465 GLY X 295 REMARK 465 SER X 296 REMARK 465 ALA X 297 REMARK 465 GLU X 298 REMARK 465 SER X 299 REMARK 465 THR X 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG X 169 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE X 122 -85.52 -115.78 REMARK 500 SER X 136 -104.84 -125.44 REMARK 500 PRO X 149 8.22 -67.75 REMARK 500 SER X 180 -170.20 -63.67 REMARK 500 GLU X 228 84.88 -69.03 REMARK 500 SER X 232 -70.69 -67.28 REMARK 500 HIS X 233 90.28 -66.77 REMARK 500 ASP X 235 75.13 37.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 ACCORDING TO THE GENBANK NP_142130, THE FIRST THREE RESIDUES, M-V- REMARK 999 L, ARE INCLUDED AS THE ORIGINAL SEQUENCE. THE FRAGMENT INFROMATION REMARK 999 IS ADJUSTED FOR IT. DBREF 3O59 X 4 300 UNP O57861 DP2L_PYRHO 1 297 SEQADV 3O59 MSE X 1 UNP O57861 SEE REMARK 999 SEQADV 3O59 VAL X 2 UNP O57861 SEE REMARK 999 SEQADV 3O59 LEU X 3 UNP O57861 SEE REMARK 999 SEQRES 1 X 300 MSE VAL LEU MSE GLU LEU PRO LYS GLU MSE GLU GLU TYR SEQRES 2 X 300 PHE SER MSE LEU GLN ARG GLU ILE ASP LYS ALA TYR GLU SEQRES 3 X 300 ILE ALA LYS LYS ALA ARG ALA GLN GLY LYS ASP PRO SER SEQRES 4 X 300 LEU ASP VAL GLU ILE PRO GLN ALA SER ASP MSE ALA GLY SEQRES 5 X 300 ARG VAL GLU SER LEU VAL GLY PRO PRO GLY VAL ALA GLU SEQRES 6 X 300 ARG ILE ARG GLU LEU VAL LYS GLU TYR GLY LYS GLU ILE SEQRES 7 X 300 ALA ALA LEU LYS ILE VAL ASP GLU ILE ILE ASP GLY LYS SEQRES 8 X 300 PHE GLY ASP LEU GLY SER LYS GLU LYS TYR ALA GLU GLN SEQRES 9 X 300 ALA VAL ARG THR ALA LEU ALA ILE LEU THR GLU GLY VAL SEQRES 10 X 300 VAL SER ALA PRO ILE GLU GLY ILE ALA SER VAL LYS ILE SEQRES 11 X 300 LYS ARG ASN THR TRP SER ASP ASN SER GLU TYR LEU ALA SEQRES 12 X 300 LEU TYR TYR ALA GLY PRO ILE ARG SER SER GLY GLY THR SEQRES 13 X 300 ALA GLN ALA LEU SER VAL LEU VAL GLY ASP TYR VAL ARG SEQRES 14 X 300 ARG LYS LEU GLY LEU ASP ARG PHE LYS PRO SER GLU LYS SEQRES 15 X 300 HIS ILE GLU ARG MSE VAL GLU GLU VAL ASP LEU TYR HIS SEQRES 16 X 300 ARG THR VAL SER ARG LEU GLN TYR HIS PRO SER PRO GLU SEQRES 17 X 300 GLU VAL ARG LEU ALA MSE ARG ASN ILE PRO ILE GLU ILE SEQRES 18 X 300 THR GLY GLU ALA THR ASP GLU VAL GLU VAL SER HIS ARG SEQRES 19 X 300 ASP ILE PRO GLY VAL GLU THR ASN GLN LEU ARG GLY GLY SEQRES 20 X 300 ALA ILE LEU VAL LEU ALA GLU GLY VAL LEU GLN LYS ALA SEQRES 21 X 300 LYS LYS LEU VAL LYS TYR ILE ASP LYS MSE GLY ILE GLU SEQRES 22 X 300 GLY TRP GLU TRP LEU LYS GLU PHE VAL GLU ALA LYS GLU SEQRES 23 X 300 LYS GLY GLU GLU ILE GLU GLU GLU GLY SER ALA GLU SER SEQRES 24 X 300 THR MODRES 3O59 MSE X 50 MET SELENOMETHIONINE MODRES 3O59 MSE X 187 MET SELENOMETHIONINE MODRES 3O59 MSE X 214 MET SELENOMETHIONINE MODRES 3O59 MSE X 270 MET SELENOMETHIONINE HET MSE X 50 8 HET MSE X 187 8 HET MSE X 214 8 HET MSE X 270 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *107(H2 O) HELIX 1 1 ASP X 49 GLY X 59 1 11 HELIX 2 2 GLY X 62 GLY X 75 1 14 HELIX 3 3 GLY X 75 GLY X 90 1 16 HELIX 4 4 SER X 97 THR X 114 1 18 HELIX 5 5 GLY X 148 SER X 153 5 6 HELIX 6 6 GLY X 154 LEU X 172 1 19 HELIX 7 7 SER X 180 VAL X 198 1 19 HELIX 8 8 SER X 206 ILE X 217 1 12 HELIX 9 9 ARG X 245 GLU X 254 1 10 HELIX 10 10 LYS X 259 GLY X 271 1 13 HELIX 11 11 TRP X 275 GLY X 288 1 14 SHEET 1 A 3 ILE X 125 ARG X 132 0 SHEET 2 A 3 GLU X 140 TYR X 146 -1 O TYR X 145 N SER X 127 SHEET 3 A 3 GLU X 220 GLY X 223 1 O THR X 222 N TYR X 146 LINK C ASP X 49 N MSE X 50 1555 1555 1.34 LINK C MSE X 50 N ALA X 51 1555 1555 1.34 LINK C ARG X 186 N MSE X 187 1555 1555 1.33 LINK C MSE X 187 N VAL X 188 1555 1555 1.33 LINK C ALA X 213 N MSE X 214 1555 1555 1.33 LINK C MSE X 214 N ARG X 215 1555 1555 1.32 LINK C LYS X 269 N MSE X 270 1555 1555 1.32 LINK C MSE X 270 N GLY X 271 1555 1555 1.34 CISPEP 1 GLY X 59 PRO X 60 0 1.95 CRYST1 54.042 54.042 173.335 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018504 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005769 0.00000