data_3O5Z # _entry.id 3O5Z # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3O5Z RCSB RCSB060707 WWPDB D_1000060707 # _pdbx_database_status.entry_id 3O5Z _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-07-28 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, S.' 1 'Xiao, Y.' 2 'Ponnusamy, R.' 3 'Tan, J.' 4 'Lei, J.' 5 'Hilgenfeld, R.' 6 # _citation.id primary _citation.title 'X-ray structure of the SH3 domain of the phosphoinositide 3-kinase p85 beta subunit' _citation.journal_abbrev 'Acta Crystallogr.,Sect.F' _citation.journal_volume 67 _citation.page_first 1328 _citation.page_last 1333 _citation.year 2011 _citation.journal_id_ASTM ? _citation.country DK _citation.journal_id_ISSN 1744-3091 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22102226 _citation.pdbx_database_id_DOI 10.1107/S1744309111031691 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, S.' 1 primary 'Xiao, Y.' 2 primary 'Ponnusamy, R.' 3 primary 'Tan, J.' 4 primary 'Lei, J.' 5 primary 'Hilgenfeld, R.' 6 # _cell.length_a 46.010 _cell.length_b 57.790 _cell.length_c 62.970 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3O5Z _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 3O5Z _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Phosphatidylinositol 3-kinase regulatory subunit beta' 9811.126 2 ? ? 'SH3 domain, UNP residues 6-90' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 4 water nat water 18.015 23 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;PtdIns-3-kinase regulatory subunit beta, PI3-kinase regulatory subunit beta, PI3K regulatory subunit beta, Phosphatidylinositol 3-kinase 85 kDa regulatory subunit beta, PtdIns-3-kinase regulatory subunit p85-beta, PI3-kinase subunit p85-beta ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYV EFLGPVALAR ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYV EFLGPVALAR ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 MET n 1 7 ALA n 1 8 GLY n 1 9 PRO n 1 10 GLU n 1 11 GLY n 1 12 PHE n 1 13 GLN n 1 14 TYR n 1 15 ARG n 1 16 ALA n 1 17 LEU n 1 18 TYR n 1 19 PRO n 1 20 PHE n 1 21 ARG n 1 22 ARG n 1 23 GLU n 1 24 ARG n 1 25 PRO n 1 26 GLU n 1 27 ASP n 1 28 LEU n 1 29 GLU n 1 30 LEU n 1 31 LEU n 1 32 PRO n 1 33 GLY n 1 34 ASP n 1 35 VAL n 1 36 LEU n 1 37 VAL n 1 38 VAL n 1 39 SER n 1 40 ARG n 1 41 ALA n 1 42 ALA n 1 43 LEU n 1 44 GLN n 1 45 ALA n 1 46 LEU n 1 47 GLY n 1 48 VAL n 1 49 ALA n 1 50 GLU n 1 51 GLY n 1 52 GLY n 1 53 GLU n 1 54 ARG n 1 55 CYS n 1 56 PRO n 1 57 GLN n 1 58 SER n 1 59 VAL n 1 60 GLY n 1 61 TRP n 1 62 MET n 1 63 PRO n 1 64 GLY n 1 65 LEU n 1 66 ASN n 1 67 GLU n 1 68 ARG n 1 69 THR n 1 70 ARG n 1 71 GLN n 1 72 ARG n 1 73 GLY n 1 74 ASP n 1 75 PHE n 1 76 PRO n 1 77 GLY n 1 78 THR n 1 79 TYR n 1 80 VAL n 1 81 GLU n 1 82 PHE n 1 83 LEU n 1 84 GLY n 1 85 PRO n 1 86 VAL n 1 87 ALA n 1 88 LEU n 1 89 ALA n 1 90 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PIK3R2 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code P85B_HUMAN _struct_ref.pdbx_db_accession O00459 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP VALAR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3O5Z A 6 ? 90 ? O00459 1 ? 85 ? 1 85 2 1 3O5Z B 6 ? 90 ? O00459 1 ? 85 ? 1 85 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3O5Z GLY A 1 ? UNP O00459 ? ? 'EXPRESSION TAG' -4 1 1 3O5Z PRO A 2 ? UNP O00459 ? ? 'EXPRESSION TAG' -3 2 1 3O5Z LEU A 3 ? UNP O00459 ? ? 'EXPRESSION TAG' -2 3 1 3O5Z GLY A 4 ? UNP O00459 ? ? 'EXPRESSION TAG' -1 4 1 3O5Z SER A 5 ? UNP O00459 ? ? 'EXPRESSION TAG' 0 5 2 3O5Z GLY B 1 ? UNP O00459 ? ? 'EXPRESSION TAG' -4 6 2 3O5Z PRO B 2 ? UNP O00459 ? ? 'EXPRESSION TAG' -3 7 2 3O5Z LEU B 3 ? UNP O00459 ? ? 'EXPRESSION TAG' -2 8 2 3O5Z GLY B 4 ? UNP O00459 ? ? 'EXPRESSION TAG' -1 9 2 3O5Z SER B 5 ? UNP O00459 ? ? 'EXPRESSION TAG' 0 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3O5Z _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 2.13 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 42.34 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 285 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '30% MPD, 0.1M sodium cacodylate, 0.05M calcium acetate, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 285K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2009-09-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8123 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X13' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8123 _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, Hamburg' _diffrn_source.pdbx_synchrotron_beamline X13 # _reflns.entry_id 3O5Z _reflns.observed_criterion_sigma_F 1.0 _reflns.observed_criterion_sigma_I 1.0 _reflns.d_resolution_high 2.01 _reflns.d_resolution_low 21.4 _reflns.number_all 11654 _reflns.number_obs 11641 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.049 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.01 _reflns_shell.d_res_low 2.12 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.535 _reflns_shell.meanI_over_sigI_obs 3.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 7.2 _reflns_shell.number_unique_all 1665 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3O5Z _refine.ls_d_res_high 2.0100 _refine.ls_d_res_low 21.3700 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8900 _refine.ls_number_reflns_obs 11641 _refine.ls_number_reflns_all 11654 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.2119 _refine.ls_R_factor_obs 0.2156 _refine.ls_R_factor_R_work 0.2119 _refine.ls_wR_factor_R_work 0.2060 _refine.ls_R_factor_R_free 0.2589 _refine.ls_wR_factor_R_free 0.2598 _refine.ls_percent_reflns_R_free 7.4000 _refine.ls_number_reflns_R_free 864 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 53.1861 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0300 _refine.aniso_B[2][2] 0.0400 _refine.aniso_B[3][3] -0.0100 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9580 _refine.correlation_coeff_Fo_to_Fc_free 0.9420 _refine.overall_SU_R_Cruickshank_DPI 0.2084 _refine.overall_SU_R_free 0.1843 _refine.pdbx_overall_ESU_R_Free 0.1840 _refine.overall_SU_ML 0.1710 _refine.overall_SU_B 13.9190 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7890 _refine.B_iso_max 119.270 _refine.B_iso_min 6.590 _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1250 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 23 _refine_hist.number_atoms_total 1283 _refine_hist.d_res_high 2.0100 _refine_hist.d_res_low 21.3700 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1288 0.022 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1747 1.884 1.996 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 158 6.653 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 66 29.063 22.121 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 194 18.555 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18 20.729 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 177 0.137 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1034 0.008 0.022 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 792 1.027 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1261 1.522 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 496 2.557 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 486 3.762 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.0100 _refine_ls_shell.d_res_low 2.0620 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 793 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2710 _refine_ls_shell.R_factor_R_free 0.3020 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 47 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 840 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 3O5Z _struct.title 'Crystal structure of the SH3 domain from p85beta subunit of phosphoinositide 3-kinase (PI3K)' _struct.pdbx_descriptor 'Phosphatidylinositol 3-kinase regulatory subunit beta' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O5Z _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'Src homology 3 domain, Protein binding' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 40 ? LEU A 46 ? ARG A 35 LEU A 41 1 ? 7 HELX_P HELX_P2 2 GLY A 51 ? ARG A 54 ? GLY A 46 ARG A 49 5 ? 4 HELX_P HELX_P3 3 CYS A 55 ? GLY A 60 ? CYS A 50 GLY A 55 1 ? 6 HELX_P HELX_P4 4 ARG B 40 ? LEU B 46 ? ARG B 35 LEU B 41 1 ? 7 HELX_P HELX_P5 5 GLY B 51 ? ARG B 54 ? GLY B 46 ARG B 49 5 ? 4 HELX_P HELX_P6 6 CYS B 55 ? GLY B 60 ? CYS B 50 GLY B 55 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 55 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 55 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 50 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 50 _struct_conn.ptnr2_symmetry 3_655 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.107 _struct_conn.pdbx_value_order ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 72 ? PRO A 76 ? ARG A 67 PRO A 71 A 2 TRP A 61 ? ASN A 66 ? TRP A 56 ASN A 61 A 3 VAL A 35 ? SER A 39 ? VAL A 30 SER A 34 A 4 GLY A 11 ? ALA A 16 ? GLY A 6 ALA A 11 A 5 VAL A 80 ? VAL A 86 ? VAL A 75 VAL A 81 B 1 ARG B 72 ? PRO B 76 ? ARG B 67 PRO B 71 B 2 TRP B 61 ? ASN B 66 ? TRP B 56 ASN B 61 B 3 VAL B 35 ? SER B 39 ? VAL B 30 SER B 34 B 4 GLY B 11 ? ALA B 16 ? GLY B 6 ALA B 11 B 5 VAL B 80 ? PRO B 85 ? VAL B 75 PRO B 80 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 75 ? O PHE A 70 N MET A 62 ? N MET A 57 A 2 3 O LEU A 65 ? O LEU A 60 N VAL A 37 ? N VAL A 32 A 3 4 O VAL A 38 ? O VAL A 33 N PHE A 12 ? N PHE A 7 A 4 5 N GLN A 13 ? N GLN A 8 O LEU A 83 ? O LEU A 78 B 1 2 O PHE B 75 ? O PHE B 70 N MET B 62 ? N MET B 57 B 2 3 O LEU B 65 ? O LEU B 60 N VAL B 37 ? N VAL B 32 B 3 4 O LEU B 36 ? O LEU B 31 N TYR B 14 ? N TYR B 9 B 4 5 N GLN B 13 ? N GLN B 8 O LEU B 83 ? O LEU B 78 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 2 _struct_site.details 'BINDING SITE FOR RESIDUE MPD B 87' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 TYR B 18 ? TYR B 13 . ? 1_555 ? 2 AC1 2 TYR B 79 ? TYR B 74 . ? 1_555 ? # _atom_sites.entry_id 3O5Z _atom_sites.fract_transf_matrix[1][1] 0.021734 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017304 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015881 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -4 ? ? ? A . n A 1 2 PRO 2 -3 ? ? ? A . n A 1 3 LEU 3 -2 ? ? ? A . n A 1 4 GLY 4 -1 ? ? ? A . n A 1 5 SER 5 0 ? ? ? A . n A 1 6 MET 6 1 ? ? ? A . n A 1 7 ALA 7 2 ? ? ? A . n A 1 8 GLY 8 3 3 GLY GLY A . n A 1 9 PRO 9 4 4 PRO PRO A . n A 1 10 GLU 10 5 5 GLU GLU A . n A 1 11 GLY 11 6 6 GLY GLY A . n A 1 12 PHE 12 7 7 PHE PHE A . n A 1 13 GLN 13 8 8 GLN GLN A . n A 1 14 TYR 14 9 9 TYR TYR A . n A 1 15 ARG 15 10 10 ARG ARG A . n A 1 16 ALA 16 11 11 ALA ALA A . n A 1 17 LEU 17 12 12 LEU LEU A . n A 1 18 TYR 18 13 13 TYR TYR A . n A 1 19 PRO 19 14 14 PRO PRO A . n A 1 20 PHE 20 15 15 PHE PHE A . n A 1 21 ARG 21 16 16 ARG ARG A . n A 1 22 ARG 22 17 17 ARG ARG A . n A 1 23 GLU 23 18 18 GLU GLU A . n A 1 24 ARG 24 19 19 ARG ARG A . n A 1 25 PRO 25 20 20 PRO PRO A . n A 1 26 GLU 26 21 21 GLU GLU A . n A 1 27 ASP 27 22 22 ASP ASP A . n A 1 28 LEU 28 23 23 LEU LEU A . n A 1 29 GLU 29 24 24 GLU GLU A . n A 1 30 LEU 30 25 25 LEU LEU A . n A 1 31 LEU 31 26 26 LEU LEU A . n A 1 32 PRO 32 27 27 PRO PRO A . n A 1 33 GLY 33 28 28 GLY GLY A . n A 1 34 ASP 34 29 29 ASP ASP A . n A 1 35 VAL 35 30 30 VAL VAL A . n A 1 36 LEU 36 31 31 LEU LEU A . n A 1 37 VAL 37 32 32 VAL VAL A . n A 1 38 VAL 38 33 33 VAL VAL A . n A 1 39 SER 39 34 34 SER SER A . n A 1 40 ARG 40 35 35 ARG ARG A . n A 1 41 ALA 41 36 36 ALA ALA A . n A 1 42 ALA 42 37 37 ALA ALA A . n A 1 43 LEU 43 38 38 LEU LEU A . n A 1 44 GLN 44 39 39 GLN GLN A . n A 1 45 ALA 45 40 40 ALA ALA A . n A 1 46 LEU 46 41 41 LEU LEU A . n A 1 47 GLY 47 42 42 GLY GLY A . n A 1 48 VAL 48 43 43 VAL VAL A . n A 1 49 ALA 49 44 44 ALA ALA A . n A 1 50 GLU 50 45 45 GLU GLU A . n A 1 51 GLY 51 46 46 GLY GLY A . n A 1 52 GLY 52 47 47 GLY GLY A . n A 1 53 GLU 53 48 48 GLU GLU A . n A 1 54 ARG 54 49 49 ARG ARG A . n A 1 55 CYS 55 50 50 CYS CYS A . n A 1 56 PRO 56 51 51 PRO PRO A . n A 1 57 GLN 57 52 52 GLN GLN A . n A 1 58 SER 58 53 53 SER SER A . n A 1 59 VAL 59 54 54 VAL VAL A . n A 1 60 GLY 60 55 55 GLY GLY A . n A 1 61 TRP 61 56 56 TRP TRP A . n A 1 62 MET 62 57 57 MET MET A . n A 1 63 PRO 63 58 58 PRO PRO A . n A 1 64 GLY 64 59 59 GLY GLY A . n A 1 65 LEU 65 60 60 LEU LEU A . n A 1 66 ASN 66 61 61 ASN ASN A . n A 1 67 GLU 67 62 62 GLU GLU A . n A 1 68 ARG 68 63 63 ARG ARG A . n A 1 69 THR 69 64 64 THR THR A . n A 1 70 ARG 70 65 65 ARG ARG A . n A 1 71 GLN 71 66 66 GLN GLN A . n A 1 72 ARG 72 67 67 ARG ARG A . n A 1 73 GLY 73 68 68 GLY GLY A . n A 1 74 ASP 74 69 69 ASP ASP A . n A 1 75 PHE 75 70 70 PHE PHE A . n A 1 76 PRO 76 71 71 PRO PRO A . n A 1 77 GLY 77 72 72 GLY GLY A . n A 1 78 THR 78 73 73 THR THR A . n A 1 79 TYR 79 74 74 TYR TYR A . n A 1 80 VAL 80 75 75 VAL VAL A . n A 1 81 GLU 81 76 76 GLU GLU A . n A 1 82 PHE 82 77 77 PHE PHE A . n A 1 83 LEU 83 78 78 LEU LEU A . n A 1 84 GLY 84 79 79 GLY GLY A . n A 1 85 PRO 85 80 80 PRO PRO A . n A 1 86 VAL 86 81 81 VAL VAL A . n A 1 87 ALA 87 82 82 ALA ALA A . n A 1 88 LEU 88 83 83 LEU LEU A . n A 1 89 ALA 89 84 84 ALA ALA A . n A 1 90 ARG 90 85 ? ? ? A . n B 1 1 GLY 1 -4 ? ? ? B . n B 1 2 PRO 2 -3 ? ? ? B . n B 1 3 LEU 3 -2 ? ? ? B . n B 1 4 GLY 4 -1 ? ? ? B . n B 1 5 SER 5 0 ? ? ? B . n B 1 6 MET 6 1 ? ? ? B . n B 1 7 ALA 7 2 ? ? ? B . n B 1 8 GLY 8 3 ? ? ? B . n B 1 9 PRO 9 4 ? ? ? B . n B 1 10 GLU 10 5 5 GLU GLU B . n B 1 11 GLY 11 6 6 GLY GLY B . n B 1 12 PHE 12 7 7 PHE PHE B . n B 1 13 GLN 13 8 8 GLN GLN B . n B 1 14 TYR 14 9 9 TYR TYR B . n B 1 15 ARG 15 10 10 ARG ARG B . n B 1 16 ALA 16 11 11 ALA ALA B . n B 1 17 LEU 17 12 12 LEU LEU B . n B 1 18 TYR 18 13 13 TYR TYR B . n B 1 19 PRO 19 14 14 PRO PRO B . n B 1 20 PHE 20 15 15 PHE PHE B . n B 1 21 ARG 21 16 16 ARG ARG B . n B 1 22 ARG 22 17 17 ARG ARG B . n B 1 23 GLU 23 18 18 GLU GLU B . n B 1 24 ARG 24 19 19 ARG ARG B . n B 1 25 PRO 25 20 20 PRO PRO B . n B 1 26 GLU 26 21 21 GLU GLU B . n B 1 27 ASP 27 22 22 ASP ASP B . n B 1 28 LEU 28 23 23 LEU LEU B . n B 1 29 GLU 29 24 24 GLU GLU B . n B 1 30 LEU 30 25 25 LEU LEU B . n B 1 31 LEU 31 26 26 LEU LEU B . n B 1 32 PRO 32 27 27 PRO PRO B . n B 1 33 GLY 33 28 28 GLY GLY B . n B 1 34 ASP 34 29 29 ASP ASP B . n B 1 35 VAL 35 30 30 VAL VAL B . n B 1 36 LEU 36 31 31 LEU LEU B . n B 1 37 VAL 37 32 32 VAL VAL B . n B 1 38 VAL 38 33 33 VAL VAL B . n B 1 39 SER 39 34 34 SER SER B . n B 1 40 ARG 40 35 35 ARG ARG B . n B 1 41 ALA 41 36 36 ALA ALA B . n B 1 42 ALA 42 37 37 ALA ALA B . n B 1 43 LEU 43 38 38 LEU LEU B . n B 1 44 GLN 44 39 39 GLN GLN B . n B 1 45 ALA 45 40 40 ALA ALA B . n B 1 46 LEU 46 41 41 LEU LEU B . n B 1 47 GLY 47 42 42 GLY GLY B . n B 1 48 VAL 48 43 43 VAL VAL B . n B 1 49 ALA 49 44 44 ALA ALA B . n B 1 50 GLU 50 45 45 GLU GLU B . n B 1 51 GLY 51 46 46 GLY GLY B . n B 1 52 GLY 52 47 47 GLY GLY B . n B 1 53 GLU 53 48 48 GLU GLU B . n B 1 54 ARG 54 49 49 ARG ARG B . n B 1 55 CYS 55 50 50 CYS CYS B . n B 1 56 PRO 56 51 51 PRO PRO B . n B 1 57 GLN 57 52 52 GLN GLN B . n B 1 58 SER 58 53 53 SER SER B . n B 1 59 VAL 59 54 54 VAL VAL B . n B 1 60 GLY 60 55 55 GLY GLY B . n B 1 61 TRP 61 56 56 TRP TRP B . n B 1 62 MET 62 57 57 MET MET B . n B 1 63 PRO 63 58 58 PRO PRO B . n B 1 64 GLY 64 59 59 GLY GLY B . n B 1 65 LEU 65 60 60 LEU LEU B . n B 1 66 ASN 66 61 61 ASN ASN B . n B 1 67 GLU 67 62 62 GLU GLU B . n B 1 68 ARG 68 63 63 ARG ARG B . n B 1 69 THR 69 64 64 THR THR B . n B 1 70 ARG 70 65 65 ARG ARG B . n B 1 71 GLN 71 66 66 GLN GLN B . n B 1 72 ARG 72 67 67 ARG ARG B . n B 1 73 GLY 73 68 68 GLY GLY B . n B 1 74 ASP 74 69 69 ASP ASP B . n B 1 75 PHE 75 70 70 PHE PHE B . n B 1 76 PRO 76 71 71 PRO PRO B . n B 1 77 GLY 77 72 72 GLY GLY B . n B 1 78 THR 78 73 73 THR THR B . n B 1 79 TYR 79 74 74 TYR TYR B . n B 1 80 VAL 80 75 75 VAL VAL B . n B 1 81 GLU 81 76 76 GLU GLU B . n B 1 82 PHE 82 77 77 PHE PHE B . n B 1 83 LEU 83 78 78 LEU LEU B . n B 1 84 GLY 84 79 79 GLY GLY B . n B 1 85 PRO 85 80 80 PRO PRO B . n B 1 86 VAL 86 81 81 VAL VAL B . n B 1 87 ALA 87 82 82 ALA ALA B . n B 1 88 LEU 88 83 ? ? ? B . n B 1 89 ALA 89 84 ? ? ? B . n B 1 90 ARG 90 85 ? ? ? B . n # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,F 2 1 B,D,E,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-08-10 2 'Structure model' 1 1 2011-11-09 3 'Structure model' 1 2 2014-09-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 2.4695 14.2107 6.7651 0.2818 0.5511 1.1665 -0.0033 0.2248 0.2126 9.0456 15.8408 5.3392 -13.6151 4.3208 3.0138 -0.3990 -0.2612 0.6602 1.0393 -0.4543 2.7156 1.4320 0.7781 -1.8466 'X-RAY DIFFRACTION' 2 ? refined 16.9865 9.7898 -1.8585 0.1971 0.3087 0.1096 -0.0054 -0.1117 -0.0389 12.0011 11.0483 6.3750 0.4091 -5.6448 1.1244 -0.0176 0.0496 -0.0320 1.1622 -0.2161 0.4454 -1.1036 -0.2540 -0.2897 'X-RAY DIFFRACTION' 3 ? refined 25.3248 3.0058 4.7644 0.1175 0.3469 0.6055 0.0306 -0.0852 -0.0319 7.9562 11.2890 39.4775 -2.4965 0.5447 -8.8704 0.2237 -0.1882 -0.0354 -0.2121 -1.4523 -1.4618 -0.2786 1.2123 1.2048 'X-RAY DIFFRACTION' 4 ? refined 24.8922 4.8719 13.6495 0.4003 0.5092 0.4835 -0.0529 -0.2993 0.2007 10.0695 16.8196 7.1173 -0.2283 11.7177 5.5220 0.7929 0.1277 -0.9206 -0.2803 -1.1661 -0.9747 1.5455 0.0369 -0.3428 'X-RAY DIFFRACTION' 5 ? refined 19.9676 2.7866 2.2655 0.1402 0.1469 0.3532 0.0205 -0.0919 -0.0736 8.2695 6.9064 20.5891 0.0303 -0.9059 3.8886 0.3795 0.2899 -0.6694 0.1739 -1.5376 -0.6575 -0.1271 0.6430 0.5638 'X-RAY DIFFRACTION' 6 ? refined 11.6580 6.5433 2.8066 0.2484 0.3032 0.5778 -0.0103 -0.0757 0.0066 5.6809 5.7407 10.0288 1.2796 -5.1287 8.3778 0.0490 0.0507 -0.0997 0.1246 -0.4419 0.1446 -0.1477 -0.1872 -0.3414 'X-RAY DIFFRACTION' 7 ? refined 7.9179 16.1641 13.9400 0.5412 0.5128 0.1766 0.0480 0.2643 0.0236 9.6903 39.8572 2.7825 -0.9924 -3.5827 7.2024 0.1991 -0.0630 -0.1360 -0.5620 -0.1110 1.4572 1.7558 -0.6586 -0.9511 'X-RAY DIFFRACTION' 8 ? refined 10.9222 21.9724 11.4808 0.3500 0.3313 0.2173 -0.0452 0.1279 -0.0850 8.5253 11.8298 14.0572 -7.6602 6.6478 -7.5291 -0.1081 0.3499 -0.2419 -0.8631 -0.2656 1.1144 1.4262 -0.0604 -0.6359 'X-RAY DIFFRACTION' 9 ? refined 13.9771 20.4840 3.5987 0.1940 0.1819 0.1572 -0.0024 -0.0180 -0.0401 8.5838 14.3731 12.2102 -0.7984 -0.8246 -1.0138 0.1124 0.0335 -0.1458 0.1948 1.2502 -0.0690 0.3141 -0.3289 -0.1093 'X-RAY DIFFRACTION' 10 ? refined 17.9816 13.0655 9.8553 0.4579 0.3481 0.1610 -0.0386 -0.0616 -0.0182 1.2298 10.9002 2.8462 -7.3695 1.5255 0.2103 0.0106 0.1967 -0.2073 -0.0815 0.2054 -0.4237 1.0979 0.0892 -0.0257 'X-RAY DIFFRACTION' 11 ? refined 12.2074 0.4570 4.2696 0.2152 0.1857 0.6416 -0.0344 -0.2128 0.0043 0.7333 23.5576 13.0449 -0.8888 6.8942 1.7702 0.9450 -0.4483 -0.4968 -0.0738 -1.2540 0.4046 -0.1904 0.8591 -0.3708 'X-RAY DIFFRACTION' 12 ? refined 13.5631 1.8435 10.3192 0.3670 0.4054 0.6719 -0.0631 -0.2298 0.2439 7.4112 6.0685 11.3149 2.5808 5.9013 1.3372 0.6216 -0.4620 -0.1597 -1.6043 -1.4800 0.6743 0.9894 0.4520 -0.6749 'X-RAY DIFFRACTION' 13 ? refined 17.7163 12.7110 2.0217 0.1646 0.2365 0.0726 -0.0129 -0.0450 -0.0320 13.7774 13.9770 4.7082 -2.3741 3.1366 -0.9727 0.0838 0.0221 -0.1059 0.3206 0.0627 -0.4059 -0.3259 0.1054 -0.0011 'X-RAY DIFFRACTION' 14 ? refined 3.0837 10.3747 3.9059 0.1976 0.3445 1.0264 -0.0146 -0.0728 0.0759 15.7315 10.6522 -2.9482 3.8951 0.7628 7.7656 -0.0484 -0.0166 0.0649 -0.0597 -1.0625 2.1348 0.4773 0.5014 -0.1056 'X-RAY DIFFRACTION' 15 ? refined 30.3122 7.0825 34.6493 0.9411 0.4074 0.6434 -0.1298 0.3582 -0.1582 3.7657 4.7567 15.4067 -1.4328 1.0263 -11.7225 -0.1582 0.0440 0.1142 -0.4068 1.1115 0.7080 2.1042 -0.4878 0.4063 'X-RAY DIFFRACTION' 16 ? refined 38.9756 11.3325 22.5696 0.3399 0.5887 0.5481 -0.1143 0.0426 0.0426 2.3829 6.2584 15.7766 1.1255 8.4815 -7.8568 -0.1396 -0.3269 0.4664 0.2862 0.4364 -0.7847 -0.5607 0.6019 1.5528 'X-RAY DIFFRACTION' 17 ? refined 30.8605 15.8801 14.7783 0.6115 0.3740 0.3806 -0.1256 0.0220 0.1224 15.2685 12.3080 7.1965 7.7581 5.1994 2.7884 -0.7166 0.4651 0.2514 0.7575 0.7912 -0.4134 -0.4810 -1.5993 0.6602 'X-RAY DIFFRACTION' 18 ? refined 27.3461 16.5631 18.9733 0.5835 0.3587 0.6608 -0.0461 -0.1831 0.1893 0.0244 6.2513 19.1326 -11.6247 -6.9832 4.6399 0.2611 -0.8884 0.6273 0.6657 0.6011 0.0990 -0.3358 -1.5894 -0.7759 'X-RAY DIFFRACTION' 19 ? refined 37.5495 15.4966 27.5375 0.6104 0.5419 0.3447 -0.3958 -0.1179 0.0538 19.1594 18.0463 -7.5496 -3.3242 2.9025 -1.4585 -0.1557 -0.0988 0.2545 0.5257 0.8443 -0.1903 0.5724 -0.2057 0.6368 'X-RAY DIFFRACTION' 20 ? refined 23.0454 5.9523 31.3189 0.3164 0.2327 0.4569 -0.0084 0.1153 -0.0219 4.2357 7.2524 5.6195 2.3015 0.5176 2.0671 0.2605 -0.3304 0.0699 -0.6430 0.6292 1.4866 1.1242 -0.4462 -0.6537 'X-RAY DIFFRACTION' 21 ? refined 22.5999 -1.7865 28.7318 0.2376 0.2235 0.3321 0.0222 0.0584 0.0092 13.3088 21.4240 -1.1671 2.5318 2.8032 -0.0716 -0.0036 0.0958 -0.0921 -0.0699 -0.2425 1.6668 0.3951 -0.5712 -0.1845 'X-RAY DIFFRACTION' 22 ? refined 31.9038 -0.6493 29.4265 0.1171 0.1510 0.1785 -0.0420 -0.0513 -0.0145 17.7392 17.1839 21.8060 2.6217 -11.4403 -3.6675 0.1561 -0.2635 0.1075 -0.6306 -0.5289 0.2421 0.4423 0.0669 0.7300 'X-RAY DIFFRACTION' 23 ? refined 27.8015 4.8107 22.3104 0.2237 0.2496 0.4584 -0.0246 -0.0893 0.0738 0.8618 17.3840 3.5473 2.3218 2.3261 -6.7909 -0.1806 0.0615 0.1191 0.1779 0.3534 1.2772 -0.2430 0.0685 -0.0345 'X-RAY DIFFRACTION' 24 ? refined 30.6005 17.7641 30.6522 0.8982 0.3237 0.5012 -0.1177 0.0189 -0.0105 -3.0256 20.9471 26.3165 -8.9803 -13.7551 -2.9457 0.5676 -0.6125 0.0449 -1.5707 0.1988 0.6769 2.8516 -2.5371 1.5142 'X-RAY DIFFRACTION' 25 ? refined 27.2663 17.2296 26.6662 0.6028 0.0937 0.6391 -0.0416 0.0632 0.0905 9.0781 8.3511 7.3874 -1.4586 1.0541 0.7279 -0.0350 -0.0660 0.1010 0.1506 1.4379 1.6361 1.0584 -1.6844 -0.2532 'X-RAY DIFFRACTION' 26 ? refined 35.9120 6.6502 24.0330 0.1253 0.2950 0.1223 -0.0475 -0.0532 0.0139 6.1320 18.8323 19.3035 -1.2414 4.5425 -3.6820 0.0170 -0.0171 0.0002 0.2527 0.0947 -0.3710 -0.5668 -0.1196 1.4000 'X-RAY DIFFRACTION' 27 ? refined 31.3270 5.8029 37.6454 0.8271 0.5281 0.3757 -0.0581 0.1089 -0.0935 5.6708 5.3636 22.2243 -2.7407 -6.8974 4.3100 -0.1047 0.0573 0.0474 -1.5413 1.0827 0.8038 2.1590 -0.4171 0.2939 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 3 A 8 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 9 A 13 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 14 A 17 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 18 A 22 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 23 A 27 ? . . . . ? 'X-RAY DIFFRACTION' 6 6 A 28 A 33 ? . . . . ? 'X-RAY DIFFRACTION' 7 7 A 34 A 40 ? . . . . ? 'X-RAY DIFFRACTION' 8 8 A 41 A 47 ? . . . . ? 'X-RAY DIFFRACTION' 9 9 A 48 A 53 ? . . . . ? 'X-RAY DIFFRACTION' 10 10 A 54 A 59 ? . . . . ? 'X-RAY DIFFRACTION' 11 11 A 60 A 64 ? . . . . ? 'X-RAY DIFFRACTION' 12 12 A 65 A 69 ? . . . . ? 'X-RAY DIFFRACTION' 13 13 A 70 A 77 ? . . . . ? 'X-RAY DIFFRACTION' 14 14 A 78 A 84 ? . . . . ? 'X-RAY DIFFRACTION' 15 15 B 5 B 10 ? . . . . ? 'X-RAY DIFFRACTION' 16 16 B 11 B 15 ? . . . . ? 'X-RAY DIFFRACTION' 17 17 B 16 B 19 ? . . . . ? 'X-RAY DIFFRACTION' 18 18 B 20 B 24 ? . . . . ? 'X-RAY DIFFRACTION' 19 19 B 25 B 30 ? . . . . ? 'X-RAY DIFFRACTION' 20 20 B 31 B 39 ? . . . . ? 'X-RAY DIFFRACTION' 21 21 B 40 B 47 ? . . . . ? 'X-RAY DIFFRACTION' 22 22 B 48 B 52 ? . . . . ? 'X-RAY DIFFRACTION' 23 23 B 53 B 58 ? . . . . ? 'X-RAY DIFFRACTION' 24 24 B 59 B 63 ? . . . . ? 'X-RAY DIFFRACTION' 25 25 B 64 B 70 ? . . . . ? 'X-RAY DIFFRACTION' 26 26 B 71 B 76 ? . . . . ? 'X-RAY DIFFRACTION' 27 27 B 77 B 82 ? . . . . ? # _pdbx_phasing_MR.entry_id 3O5Z _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 48.370 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 23.700 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 23.700 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 PHASER 2.1.4 'Thu Nov 13 10:53:32 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 2 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 3 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 4 DNA . ? ? ? ? 'data collection' ? ? ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 SCALA . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 65 ? ? 80.60 6.81 2 1 GLU B 21 ? ? -66.09 0.29 3 1 CYS B 50 ? ? -119.82 66.59 4 1 ARG B 65 ? ? 67.81 -0.44 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -4 ? A GLY 1 2 1 Y 1 A PRO -3 ? A PRO 2 3 1 Y 1 A LEU -2 ? A LEU 3 4 1 Y 1 A GLY -1 ? A GLY 4 5 1 Y 1 A SER 0 ? A SER 5 6 1 Y 1 A MET 1 ? A MET 6 7 1 Y 1 A ALA 2 ? A ALA 7 8 1 Y 1 A ARG 85 ? A ARG 90 9 1 Y 1 B GLY -4 ? B GLY 1 10 1 Y 1 B PRO -3 ? B PRO 2 11 1 Y 1 B LEU -2 ? B LEU 3 12 1 Y 1 B GLY -1 ? B GLY 4 13 1 Y 1 B SER 0 ? B SER 5 14 1 Y 1 B MET 1 ? B MET 6 15 1 Y 1 B ALA 2 ? B ALA 7 16 1 Y 1 B GLY 3 ? B GLY 8 17 1 Y 1 B PRO 4 ? B PRO 9 18 1 Y 1 B LEU 83 ? B LEU 88 19 1 Y 1 B ALA 84 ? B ALA 89 20 1 Y 1 B ARG 85 ? B ARG 90 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 86 1 CL CL A . D 2 CL 1 86 2 CL CL B . E 3 MPD 1 87 1 MPD MPD B . F 4 HOH 1 87 1 HOH HOH A . F 4 HOH 2 88 2 HOH HOH A . F 4 HOH 3 89 4 HOH HOH A . F 4 HOH 4 90 5 HOH HOH A . F 4 HOH 5 91 6 HOH HOH A . F 4 HOH 6 92 7 HOH HOH A . F 4 HOH 7 93 11 HOH HOH A . F 4 HOH 8 94 13 HOH HOH A . F 4 HOH 9 95 14 HOH HOH A . F 4 HOH 10 96 15 HOH HOH A . F 4 HOH 11 97 16 HOH HOH A . F 4 HOH 12 98 19 HOH HOH A . F 4 HOH 13 99 20 HOH HOH A . F 4 HOH 14 100 21 HOH HOH A . G 4 HOH 1 88 3 HOH HOH B . G 4 HOH 2 89 8 HOH HOH B . G 4 HOH 3 90 9 HOH HOH B . G 4 HOH 4 91 10 HOH HOH B . G 4 HOH 5 92 12 HOH HOH B . G 4 HOH 6 93 17 HOH HOH B . G 4 HOH 7 94 18 HOH HOH B . G 4 HOH 8 95 22 HOH HOH B . G 4 HOH 9 96 23 HOH HOH B . #