HEADER OXIDOREDUCTASE 29-JUL-10 3O6J TITLE CRYSTAL STRUCTURE OF 4-CHLOROCATECHOL DIOXYGENASE FROM RHODOCOCCUS TITLE 2 OPACUS 1CP IN COMPLEX WITH HYDROXYQUINOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLOROCATECHOL 1,2-DIOXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.13.11.- SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS OPACUS; SOURCE 3 ORGANISM_COMMON: NOCARDIA OPACA; SOURCE 4 ORGANISM_TAXID: 37919; SOURCE 5 STRAIN: 1CP KEYWDS BETA BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.FERRARONI,F.BRIGANTI,M.KOLOMITSEVA,L.GOLOVLEVA REVDAT 3 21-FEB-24 3O6J 1 REMARK LINK REVDAT 2 19-APR-17 3O6J 1 JRNL REVDAT 1 17-AUG-11 3O6J 0 JRNL AUTH M.FERRARONI,M.KOLOMYTSEVA,A.SCOZZAFAVA,L.GOLOVLEVA, JRNL AUTH 2 F.BRIGANTI JRNL TITL X-RAY STRUCTURES OF 4-CHLOROCATECHOL 1,2-DIOXYGENASE ADDUCTS JRNL TITL 2 WITH SUBSTITUTED CATECHOLS: NEW PERSPECTIVES IN THE JRNL TITL 3 MOLECULAR BASIS OF INTRADIOL RING CLEAVING DIOXYGENASES JRNL TITL 4 SPECIFICITY. JRNL REF J. STRUCT. BIOL. V. 181 274 2013 JRNL REFN ESSN 1095-8657 JRNL PMID 23261399 JRNL DOI 10.1016/J.JSB.2012.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 852 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1069 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4015 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.01000 REMARK 3 B22 (A**2) : -3.01000 REMARK 3 B33 (A**2) : 4.51000 REMARK 3 B12 (A**2) : -1.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.437 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.315 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4215 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5739 ; 1.931 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 8.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;37.273 ;23.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;22.538 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;24.497 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 613 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3285 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2553 ; 0.839 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4146 ; 1.588 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1662 ; 2.345 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1593 ; 3.993 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3O6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000060727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.992 REMARK 200 MONOCHROMATOR : CHANNEL CUT CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17100 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 17.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, NACL, TRIS, PH 9.0, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 152.96000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 152.96000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 152.96000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 152.96000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 152.96000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 152.96000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CZ NH1 NH2 REMARK 470 LYS A 89 CB CG CD CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 TYR B 64 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 66 CB CG CD CE NZ REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 TYR B 169 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 173 CB CG CD CE NZ REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 237 CD CE REMARK 470 GLN B 255 CB CG CD OE1 NE2 REMARK 470 HIS B 256 CB CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE FE A 300 O1 HQN A 258 1.68 REMARK 500 O ASP B 239 N ASP B 241 2.05 REMARK 500 OE2 GLU B 46 OG1 THR B 177 2.13 REMARK 500 O GLY B 42 O ALA B 44 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 90 C - N - CA ANGL. DEV. = 11.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 64 135.18 -177.00 REMARK 500 ASP A 131 2.39 -61.02 REMARK 500 PHE A 136 -7.13 84.19 REMARK 500 ASP A 143 71.30 -66.98 REMARK 500 TYR A 145 90.40 -69.30 REMARK 500 LEU A 147 39.59 37.94 REMARK 500 SER A 163 -172.95 -179.29 REMARK 500 SER A 183 -72.81 -73.00 REMARK 500 ARG A 187 -161.65 -121.98 REMARK 500 HIS A 188 -165.88 -112.26 REMARK 500 SER A 189 34.16 -144.43 REMARK 500 SER A 221 49.50 -160.24 REMARK 500 GLU A 230 -8.75 -53.09 REMARK 500 ASP A 239 150.95 -41.55 REMARK 500 ASN B 3 -93.45 14.76 REMARK 500 SER B 40 -66.46 -27.37 REMARK 500 THR B 57 -36.62 -35.67 REMARK 500 LYS B 66 165.48 -41.01 REMARK 500 TRP B 69 -170.02 -62.66 REMARK 500 PHE B 78 -16.12 -140.58 REMARK 500 PHE B 79 157.62 -43.47 REMARK 500 THR B 87 3.65 -156.98 REMARK 500 ALA B 91 82.29 52.74 REMARK 500 GLU B 99 139.52 -38.82 REMARK 500 PRO B 117 129.40 -38.30 REMARK 500 THR B 129 152.70 -48.93 REMARK 500 ASN B 130 -17.48 -44.22 REMARK 500 SER B 135 139.29 -29.48 REMARK 500 PHE B 136 -4.05 92.19 REMARK 500 PHE B 137 38.64 -147.49 REMARK 500 SER B 138 118.29 -162.30 REMARK 500 PRO B 142 164.20 -34.90 REMARK 500 ASP B 143 55.21 -100.98 REMARK 500 SER B 158 162.42 -48.83 REMARK 500 SER B 163 -160.85 -160.35 REMARK 500 PRO B 168 128.16 -28.52 REMARK 500 PRO B 172 97.00 -30.44 REMARK 500 PRO B 176 -50.39 -27.51 REMARK 500 ARG B 187 -143.62 -112.88 REMARK 500 ALA B 193 133.36 -34.87 REMARK 500 ALA B 201 121.84 -179.76 REMARK 500 PRO B 206 154.70 -47.14 REMARK 500 GLU B 214 152.35 -46.05 REMARK 500 TYR B 218 35.26 -97.83 REMARK 500 LEU B 219 -71.43 -69.25 REMARK 500 ASP B 220 86.63 -69.42 REMARK 500 SER B 221 8.76 140.78 REMARK 500 SER B 225 53.90 37.01 REMARK 500 GLU B 230 -18.31 -36.44 REMARK 500 ASP B 239 34.55 -98.85 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 89 PRO A 90 149.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MYY A 304 REMARK 610 MYY B 303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 300 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 134 OH REMARK 620 2 HIS A 194 NE2 86.5 REMARK 620 3 HIS A 196 NE2 87.5 90.5 REMARK 620 4 HQN A 258 O2 161.6 103.9 77.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 134 OH REMARK 620 2 HIS B 194 NE2 76.7 REMARK 620 3 HIS B 196 NE2 102.8 100.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYY A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HQN A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYY B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3O32 RELATED DB: PDB REMARK 900 RELATED ID: 3O5U RELATED DB: PDB REMARK 900 RELATED ID: 3O6R RELATED DB: PDB DBREF 3O6J A 1 257 UNP O67987 CLCA_RHOOP 1 257 DBREF 3O6J B 1 257 UNP O67987 CLCA_RHOOP 1 257 SEQRES 1 A 257 MET ALA ASN THR ARG VAL ILE GLU LEU PHE ASP GLU PHE SEQRES 2 A 257 THR ASP LEU ILE ARG ASP PHE ILE VAL ARG HIS GLU ILE SEQRES 3 A 257 THR THR PRO GLU TYR GLU THR ILE MET GLN TYR MET ILE SEQRES 4 A 257 SER VAL GLY GLU ALA GLY GLU TRP PRO LEU TRP LEU ASP SEQRES 5 A 257 ALA PHE PHE GLU THR THR VAL ASP SER VAL SER TYR GLY SEQRES 6 A 257 LYS GLY ASN TRP THR SER SER ALA ILE GLN GLY PRO PHE SEQRES 7 A 257 PHE LYS GLU GLY ALA PRO LEU LEU THR GLY LYS PRO ALA SEQRES 8 A 257 THR LEU PRO MET ARG ALA ASP GLU PRO GLY ASP ARG MET SEQRES 9 A 257 ARG PHE THR GLY SER VAL ARG ASP THR SER GLY THR PRO SEQRES 10 A 257 ILE THR GLY ALA VAL ILE ASP VAL TRP HIS SER THR ASN SEQRES 11 A 257 ASP GLY ASN TYR SER PHE PHE SER PRO ALA LEU PRO ASP SEQRES 12 A 257 GLN TYR LEU LEU ARG GLY ARG VAL VAL PRO ALA GLU ASP SEQRES 13 A 257 GLY SER ILE GLU PHE HIS SER ILE ARG PRO VAL PRO TYR SEQRES 14 A 257 GLU ILE PRO LYS ALA GLY PRO THR GLY GLN LEU MET ASN SEQRES 15 A 257 SER TYR LEU GLY ARG HIS SER TRP ARG PRO ALA HIS ILE SEQRES 16 A 257 HIS ILE ARG ILE THR ALA ASP GLY TYR ARG PRO LEU ILE SEQRES 17 A 257 THR GLN LEU TYR PHE GLU GLY ASP PRO TYR LEU ASP SER SEQRES 18 A 257 ASP SER CYS SER ALA VAL LYS SER GLU LEU VAL LEU PRO SEQRES 19 A 257 VAL ASN LYS ILE ASP ILE ASP GLY GLU THR TRP GLN LEU SEQRES 20 A 257 VAL ASP PHE ASN PHE ILE LEU GLN HIS ASN SEQRES 1 B 257 MET ALA ASN THR ARG VAL ILE GLU LEU PHE ASP GLU PHE SEQRES 2 B 257 THR ASP LEU ILE ARG ASP PHE ILE VAL ARG HIS GLU ILE SEQRES 3 B 257 THR THR PRO GLU TYR GLU THR ILE MET GLN TYR MET ILE SEQRES 4 B 257 SER VAL GLY GLU ALA GLY GLU TRP PRO LEU TRP LEU ASP SEQRES 5 B 257 ALA PHE PHE GLU THR THR VAL ASP SER VAL SER TYR GLY SEQRES 6 B 257 LYS GLY ASN TRP THR SER SER ALA ILE GLN GLY PRO PHE SEQRES 7 B 257 PHE LYS GLU GLY ALA PRO LEU LEU THR GLY LYS PRO ALA SEQRES 8 B 257 THR LEU PRO MET ARG ALA ASP GLU PRO GLY ASP ARG MET SEQRES 9 B 257 ARG PHE THR GLY SER VAL ARG ASP THR SER GLY THR PRO SEQRES 10 B 257 ILE THR GLY ALA VAL ILE ASP VAL TRP HIS SER THR ASN SEQRES 11 B 257 ASP GLY ASN TYR SER PHE PHE SER PRO ALA LEU PRO ASP SEQRES 12 B 257 GLN TYR LEU LEU ARG GLY ARG VAL VAL PRO ALA GLU ASP SEQRES 13 B 257 GLY SER ILE GLU PHE HIS SER ILE ARG PRO VAL PRO TYR SEQRES 14 B 257 GLU ILE PRO LYS ALA GLY PRO THR GLY GLN LEU MET ASN SEQRES 15 B 257 SER TYR LEU GLY ARG HIS SER TRP ARG PRO ALA HIS ILE SEQRES 16 B 257 HIS ILE ARG ILE THR ALA ASP GLY TYR ARG PRO LEU ILE SEQRES 17 B 257 THR GLN LEU TYR PHE GLU GLY ASP PRO TYR LEU ASP SER SEQRES 18 B 257 ASP SER CYS SER ALA VAL LYS SER GLU LEU VAL LEU PRO SEQRES 19 B 257 VAL ASN LYS ILE ASP ILE ASP GLY GLU THR TRP GLN LEU SEQRES 20 B 257 VAL ASP PHE ASN PHE ILE LEU GLN HIS ASN HET FE A 300 1 HET MYY A 304 36 HET HQN A 258 9 HET CL A 259 1 HET FE B 301 1 HET MYY B 303 38 HETNAM FE FE (III) ION HETNAM MYY (2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL HETNAM 2 MYY PALMITATE HETNAM HQN BENZENE-1,2,4-TRIOL HETNAM CL CHLORIDE ION FORMUL 3 FE 2(FE 3+) FORMUL 4 MYY 2(C33 H65 O8 P) FORMUL 5 HQN C6 H6 O3 FORMUL 6 CL CL 1- FORMUL 9 HOH *26(H2 O) HELIX 1 1 ASN A 3 GLU A 25 1 23 HELIX 2 2 THR A 27 ALA A 44 1 18 HELIX 3 3 GLU A 46 SER A 63 1 18 HELIX 4 4 GLY A 175 SER A 183 1 9 HELIX 5 5 LYS A 228 GLU A 230 5 3 HELIX 6 6 ALA B 2 HIS B 24 1 23 HELIX 7 7 THR B 27 ALA B 44 1 18 HELIX 8 8 GLU B 46 TYR B 64 1 19 HELIX 9 9 GLY B 175 SER B 183 1 9 SHEET 1 A 3 SER A 158 ILE A 164 0 SHEET 2 A 3 ARG A 103 ASP A 112 -1 N PHE A 106 O PHE A 161 SHEET 3 A 3 TRP A 245 LEU A 254 1 O PHE A 252 N SER A 109 SHEET 1 B 5 ARG A 148 VAL A 151 0 SHEET 2 B 5 VAL A 122 TRP A 126 -1 N ILE A 123 O VAL A 151 SHEET 3 B 5 HIS A 194 THR A 200 -1 O ARG A 198 N ASP A 124 SHEET 4 B 5 LEU A 207 PHE A 213 -1 O LEU A 207 N ILE A 199 SHEET 5 B 5 VAL A 232 LEU A 233 1 O LEU A 233 N TYR A 212 SHEET 1 C 2 TYR A 169 GLU A 170 0 SHEET 2 C 2 TRP A 190 ARG A 191 -1 O ARG A 191 N TYR A 169 SHEET 1 D 4 ILE B 159 ILE B 164 0 SHEET 2 D 4 ARG B 103 ARG B 111 -1 N PHE B 106 O PHE B 161 SHEET 3 D 4 TRP B 245 ILE B 253 1 O VAL B 248 N ARG B 105 SHEET 4 D 4 ASN B 236 ILE B 238 -1 N ILE B 238 O TRP B 245 SHEET 1 E 5 ARG B 148 VAL B 151 0 SHEET 2 E 5 ALA B 121 TRP B 126 -1 N VAL B 125 O GLY B 149 SHEET 3 E 5 ILE B 195 ALA B 201 -1 O ARG B 198 N ASP B 124 SHEET 4 E 5 LEU B 207 PHE B 213 -1 O THR B 209 N ILE B 197 SHEET 5 E 5 VAL B 232 LEU B 233 1 O LEU B 233 N TYR B 212 SHEET 1 F 2 TYR B 169 GLU B 170 0 SHEET 2 F 2 TRP B 190 ARG B 191 -1 O ARG B 191 N TYR B 169 LINK OH TYR A 134 FE FE A 300 1555 1555 1.92 LINK NE2 HIS A 194 FE FE A 300 1555 1555 2.05 LINK NE2 HIS A 196 FE FE A 300 1555 1555 2.02 LINK O2 HQN A 258 FE FE A 300 1555 1555 2.03 LINK OH TYR B 134 FE FE B 301 1555 1555 1.72 LINK NE2 HIS B 194 FE FE B 301 1555 1555 2.30 LINK NE2 HIS B 196 FE FE B 301 1555 1555 1.75 SITE 1 AC1 4 TYR A 134 HIS A 194 HIS A 196 HQN A 258 SITE 1 AC2 9 ASN A 3 VAL A 6 LEU A 9 PHE A 13 SITE 2 AC2 9 ILE B 34 TYR B 37 TRP B 50 TYR B 184 SITE 3 AC2 9 MYY B 303 SITE 1 AC3 9 GLY A 76 PRO A 77 TYR A 134 TYR A 169 SITE 2 AC3 9 ARG A 191 HIS A 194 HIS A 196 CYS A 224 SITE 3 AC3 9 FE A 300 SITE 1 AC4 2 GLU A 81 ARG A 150 SITE 1 AC5 4 PHE B 78 TYR B 134 HIS B 194 HIS B 196 SITE 1 AC6 7 TYR A 37 TRP A 50 TYR A 184 MYY A 304 SITE 2 AC6 7 ALA B 2 LEU B 9 PHE B 13 CRYST1 90.180 90.180 305.920 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011089 0.006402 0.000000 0.00000 SCALE2 0.000000 0.012804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003269 0.00000