data_3O7V # _entry.id 3O7V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3O7V NDB NA0649 RCSB RCSB060775 WWPDB D_1000060775 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3O3I ;Crystal Structure of human Hiwi1 PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OH at its 3'-end ; unspecified PDB 3O6E ;Crystal Structure of human Hiwi1 PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end ; unspecified PDB 3O7X 'Crystal structure of human Hili PAZ domain (residues 277-399)' unspecified # _pdbx_database_status.entry_id 3O7V _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-01 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tian, Y.' 1 'Simanshu, D.K.' 2 'Ma, J.-B.' 3 'Patel, D.J.' 4 # _citation.id primary _citation.title ;Inaugural Article: Structural basis for piRNA 2'-O-methylated 3'-end recognition by Piwi PAZ (Piwi/Argonaute/Zwille) domains. ; _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 903 _citation.page_last 910 _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21193640 _citation.pdbx_database_id_DOI 10.1073/pnas.1017762108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tian, Y.' 1 primary 'Simanshu, D.K.' 2 primary 'Ma, J.B.' 3 primary 'Patel, D.J.' 4 # _cell.length_a 44.460 _cell.length_b 44.460 _cell.length_c 147.197 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3O7V _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.entry_id 3O7V _symmetry.Int_Tables_number 91 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Piwi-like protein 1' 14704.156 1 ? V361M 'PAZ domain (UNP Residues 276-399)' ? 2 polymer syn ;RNA (5'-R(*GP*CP*GP*AP*AP*UP*AP*UP*UP*CP*GP*CP*UP*(OMU))-3') ; 4438.678 1 ? ? ? ? 3 water nat water 18.015 52 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;SETVLDF(MSE)FNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYN QEITDLKQP(MSE)LVSQPKRRRGPGGTLPGPA(MSE)LIPELCYLTGLTDKMRND ; ;SETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT DLKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRND ; X ? 2 polyribonucleotide no yes 'GCGAAUAUUCGCU(OMU)' GCGAAUAUUCGCUU A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 THR n 1 4 VAL n 1 5 LEU n 1 6 ASP n 1 7 PHE n 1 8 MSE n 1 9 PHE n 1 10 ASN n 1 11 PHE n 1 12 TYR n 1 13 HIS n 1 14 GLN n 1 15 THR n 1 16 GLU n 1 17 GLU n 1 18 HIS n 1 19 LYS n 1 20 PHE n 1 21 GLN n 1 22 GLU n 1 23 GLN n 1 24 VAL n 1 25 SER n 1 26 LYS n 1 27 GLU n 1 28 LEU n 1 29 ILE n 1 30 GLY n 1 31 LEU n 1 32 VAL n 1 33 VAL n 1 34 LEU n 1 35 THR n 1 36 LYS n 1 37 TYR n 1 38 ASN n 1 39 ASN n 1 40 LYS n 1 41 THR n 1 42 TYR n 1 43 ARG n 1 44 VAL n 1 45 ASP n 1 46 ASP n 1 47 ILE n 1 48 ASP n 1 49 TRP n 1 50 ASP n 1 51 GLN n 1 52 ASN n 1 53 PRO n 1 54 LYS n 1 55 SER n 1 56 THR n 1 57 PHE n 1 58 LYS n 1 59 LYS n 1 60 ALA n 1 61 ASP n 1 62 GLY n 1 63 SER n 1 64 GLU n 1 65 VAL n 1 66 SER n 1 67 PHE n 1 68 LEU n 1 69 GLU n 1 70 TYR n 1 71 TYR n 1 72 ARG n 1 73 LYS n 1 74 GLN n 1 75 TYR n 1 76 ASN n 1 77 GLN n 1 78 GLU n 1 79 ILE n 1 80 THR n 1 81 ASP n 1 82 LEU n 1 83 LYS n 1 84 GLN n 1 85 PRO n 1 86 MSE n 1 87 LEU n 1 88 VAL n 1 89 SER n 1 90 GLN n 1 91 PRO n 1 92 LYS n 1 93 ARG n 1 94 ARG n 1 95 ARG n 1 96 GLY n 1 97 PRO n 1 98 GLY n 1 99 GLY n 1 100 THR n 1 101 LEU n 1 102 PRO n 1 103 GLY n 1 104 PRO n 1 105 ALA n 1 106 MSE n 1 107 LEU n 1 108 ILE n 1 109 PRO n 1 110 GLU n 1 111 LEU n 1 112 CYS n 1 113 TYR n 1 114 LEU n 1 115 THR n 1 116 GLY n 1 117 LEU n 1 118 THR n 1 119 ASP n 1 120 LYS n 1 121 MET n 1 122 ARG n 1 123 ASN n 1 124 ASP n 2 1 G n 2 2 C n 2 3 G n 2 4 A n 2 5 A n 2 6 U n 2 7 A n 2 8 U n 2 9 U n 2 10 C n 2 11 G n 2 12 C n 2 13 U n 2 14 OMU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'HIWI, Piwi-like protein 1, PIWIL1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PIWL1_HUMAN Q96J94 1 ;SETVLDFMFNFYHQTEEHKFQEQVSKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEIT DLKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTGLTDKMRND ; 276 ? 2 PDB 3O7V 3O7V 2 GCGAAUAUUCGCUU 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3O7V X 1 ? 124 ? Q96J94 276 ? 399 ? 276 399 2 2 3O7V A 1 ? 14 ? 3O7V 1 ? 14 ? 1 14 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3O7V _struct_ref_seq_dif.mon_id MSE _struct_ref_seq_dif.pdbx_pdb_strand_id X _struct_ref_seq_dif.seq_num 86 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q96J94 _struct_ref_seq_dif.db_mon_id VAL _struct_ref_seq_dif.pdbx_seq_db_seq_num 361 _struct_ref_seq_dif.details 'ENGINEERED MUTATION' _struct_ref_seq_dif.pdbx_auth_seq_num 361 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 OMU 'RNA linking' n ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3O7V _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.90 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 35.26 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '1-5% PEG3350, 50 mM NaCl, 50 mM Na-acetate buffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details 'Cryogenically-cooled double crystal Si(111) monochromator.' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Cryo-Cooled Si(111) double crystal.' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C # _reflns.entry_id 3O7V _reflns.d_resolution_high 2.100 _reflns.d_resolution_low 20.000 _reflns.number_obs 9244 _reflns.pdbx_Rmerge_I_obs 0.059 _reflns.pdbx_netI_over_sigmaI 38.4 _reflns.pdbx_chi_squared 1.183 _reflns.pdbx_redundancy 11.400 _reflns.percent_possible_obs 99.400 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 2.100 2.170 ? ? ? 0.180 15.0 ? 0.866 12.000 ? 884 100.000 ? 1 2.170 2.260 ? ? ? 0.149 ? ? 1.040 11.900 ? 912 100.000 ? 2 2.260 2.360 ? ? ? 0.126 ? ? 1.142 12.000 ? 902 100.000 ? 3 2.360 2.490 ? ? ? 0.105 ? ? 1.272 12.000 ? 891 100.000 ? 4 2.490 2.640 ? ? ? 0.089 ? ? 1.254 11.800 ? 912 100.000 ? 5 2.640 2.850 ? ? ? 0.079 ? ? 1.338 11.800 ? 914 100.000 ? 6 2.850 3.130 ? ? ? 0.071 ? ? 1.329 11.500 ? 933 100.000 ? 7 3.130 3.590 ? ? ? 0.064 ? ? 1.220 10.900 ? 928 100.000 ? 8 3.590 4.510 ? ? ? 0.050 ? ? 1.184 10.500 ? 975 100.000 ? 9 4.510 20.000 ? ? ? 0.041 ? ? 1.186 9.600 ? 993 94.800 ? 10 # _refine.entry_id 3O7V _refine.ls_d_res_high 2.1000 _refine.ls_d_res_low 15.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.5500 _refine.ls_number_reflns_obs 9194 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2372 _refine.ls_R_factor_R_work 0.2352 _refine.ls_wR_factor_R_work 0.2426 _refine.ls_R_factor_R_free 0.2794 _refine.ls_wR_factor_R_free 0.2923 _refine.ls_percent_reflns_R_free 4.9000 _refine.ls_number_reflns_R_free 450 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 38.1136 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.1000 _refine.aniso_B[2][2] 0.1000 _refine.aniso_B[3][3] -0.2000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9310 _refine.correlation_coeff_Fo_to_Fc_free 0.9180 _refine.overall_SU_R_Cruickshank_DPI 0.2824 _refine.overall_SU_R_free 0.2231 _refine.pdbx_overall_ESU_R_Free 0.2230 _refine.overall_SU_ML 0.1800 _refine.overall_SU_B 15.6240 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.7982 _refine.B_iso_max 79.040 _refine.B_iso_min 16.020 _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R 0.282 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 874 _refine_hist.pdbx_number_atoms_nucleic_acid 293 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1219 _refine_hist.d_res_high 2.1000 _refine_hist.d_res_low 15.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1220 0.010 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1714 1.383 2.266 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 105 6.256 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 44 33.082 25.455 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 158 16.631 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 2 15.761 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 201 0.084 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 815 0.006 0.021 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 534 0.606 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 866 1.170 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 686 1.672 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 848 2.420 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.1000 _refine_ls_shell.d_res_low 2.1540 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 595 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2830 _refine_ls_shell.R_factor_R_free 0.3330 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 634 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3O7V _struct.title ;Crystal Structure of human Hiwi1 (V361M) PAZ domain (residues 277-399) in complex with 14-mer RNA (12-bp + 2-nt overhang) containing 2'-OCH3 at its 3'-end ; _struct.pdbx_descriptor 'Piwi-like protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3O7V _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN/RNA' _struct_keywords.text 'Piwi, RNA silencing, pi-RNA, Hiwi1, Hili, PAZ domain, RNA binding protein, RNA BINDING PROTEIN-RNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 3 ? PHE A 11 ? THR X 278 PHE X 286 1 ? 9 HELX_P HELX_P2 2 GLU A 16 ? ILE A 29 ? GLU X 291 ILE X 304 1 ? 14 HELX_P HELX_P3 3 PHE A 67 ? ASN A 76 ? PHE X 342 ASN X 351 1 ? 10 HELX_P HELX_P4 4 ILE A 108 ? GLU A 110 ? ILE X 383 GLU X 385 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PHE 7 C ? ? ? 1_555 A MSE 8 N ? ? X PHE 282 X MSE 283 1_555 ? ? ? ? ? ? ? 1.338 ? covale2 covale ? ? A MSE 8 C ? ? ? 1_555 A PHE 9 N ? ? X MSE 283 X PHE 284 1_555 ? ? ? ? ? ? ? 1.319 ? covale3 covale ? ? A PRO 85 C ? ? ? 1_555 A MSE 86 N ? ? X PRO 360 X MSE 361 1_555 ? ? ? ? ? ? ? 1.327 ? covale4 covale ? ? A MSE 86 C ? ? ? 1_555 A LEU 87 N ? ? X MSE 361 X LEU 362 1_555 ? ? ? ? ? ? ? 1.334 ? covale5 covale ? ? A ALA 105 C ? ? ? 1_555 A MSE 106 N ? ? X ALA 380 X MSE 381 1_555 ? ? ? ? ? ? ? 1.331 ? covale6 covale ? ? A MSE 106 C ? ? ? 1_555 A LEU 107 N ? ? X MSE 381 X LEU 382 1_555 ? ? ? ? ? ? ? 1.323 ? covale7 covale ? ? B U 13 "O3'" ? ? ? 1_555 B OMU 14 P ? ? A U 13 A OMU 14 1_555 ? ? ? ? ? ? ? 1.595 ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 1 A C 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 1 A C 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 1 A C 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 2 A G 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 2 A G 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 2 A G 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 3 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 3 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 3 A C 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 9 N3 ? ? A A 4 A U 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 9 O4 ? ? A A 4 A U 9 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B A 5 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 5 A U 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B A 5 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 5 A U 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B U 6 N3 ? ? ? 1_555 B A 7 N1 ? ? A U 6 A A 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B U 6 O4 ? ? ? 1_555 B A 7 N6 ? ? A U 6 A A 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B A 7 N1 ? ? ? 1_555 B U 6 N3 ? ? A A 7 A U 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B A 7 N6 ? ? ? 1_555 B U 6 O4 ? ? A A 7 A U 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 8 A A 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 8 A A 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 9 A A 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 9 A A 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 10 A G 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 10 A G 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 10 A G 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 11 A C 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 11 A C 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 11 A C 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 12 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 12 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 12 A G 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 41 ? ARG A 43 ? THR X 316 ARG X 318 A 2 VAL A 32 ? THR A 35 ? VAL X 307 THR X 310 A 3 CYS A 112 ? TYR A 113 ? CYS X 387 TYR X 388 B 1 ASP A 46 ? ASP A 48 ? ASP X 321 ASP X 323 B 2 MSE A 86 ? SER A 89 ? MSE X 361 SER X 364 B 3 ALA A 105 ? LEU A 107 ? ALA X 380 LEU X 382 C 1 THR A 56 ? LYS A 58 ? THR X 331 LYS X 333 C 2 GLU A 64 ? SER A 66 ? GLU X 339 SER X 341 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 42 ? O TYR X 317 N VAL A 33 ? N VAL X 308 A 2 3 N LEU A 34 ? N LEU X 309 O TYR A 113 ? O TYR X 388 B 1 2 N ASP A 46 ? N ASP X 321 O VAL A 88 ? O VAL X 363 B 2 3 N LEU A 87 ? N LEU X 362 O LEU A 107 ? O LEU X 382 C 1 2 N PHE A 57 ? N PHE X 332 O VAL A 65 ? O VAL X 340 # _atom_sites.entry_id 3O7V _atom_sites.fract_transf_matrix[1][1] 0.022492 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022492 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006794 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 276 ? ? ? X . n A 1 2 GLU 2 277 277 GLU GLU X . n A 1 3 THR 3 278 278 THR THR X . n A 1 4 VAL 4 279 279 VAL VAL X . n A 1 5 LEU 5 280 280 LEU LEU X . n A 1 6 ASP 6 281 281 ASP ASP X . n A 1 7 PHE 7 282 282 PHE PHE X . n A 1 8 MSE 8 283 283 MSE MSE X . n A 1 9 PHE 9 284 284 PHE PHE X . n A 1 10 ASN 10 285 285 ASN ASN X . n A 1 11 PHE 11 286 286 PHE PHE X . n A 1 12 TYR 12 287 287 TYR TYR X . n A 1 13 HIS 13 288 288 HIS HIS X . n A 1 14 GLN 14 289 289 GLN GLN X . n A 1 15 THR 15 290 290 THR THR X . n A 1 16 GLU 16 291 291 GLU GLU X . n A 1 17 GLU 17 292 292 GLU GLU X . n A 1 18 HIS 18 293 293 HIS HIS X . n A 1 19 LYS 19 294 294 LYS LYS X . n A 1 20 PHE 20 295 295 PHE PHE X . n A 1 21 GLN 21 296 296 GLN GLN X . n A 1 22 GLU 22 297 297 GLU GLU X . n A 1 23 GLN 23 298 298 GLN GLN X . n A 1 24 VAL 24 299 299 VAL VAL X . n A 1 25 SER 25 300 300 SER SER X . n A 1 26 LYS 26 301 301 LYS LYS X . n A 1 27 GLU 27 302 302 GLU GLU X . n A 1 28 LEU 28 303 303 LEU LEU X . n A 1 29 ILE 29 304 304 ILE ILE X . n A 1 30 GLY 30 305 305 GLY GLY X . n A 1 31 LEU 31 306 306 LEU LEU X . n A 1 32 VAL 32 307 307 VAL VAL X . n A 1 33 VAL 33 308 308 VAL VAL X . n A 1 34 LEU 34 309 309 LEU LEU X . n A 1 35 THR 35 310 310 THR THR X . n A 1 36 LYS 36 311 311 LYS LYS X . n A 1 37 TYR 37 312 312 TYR TYR X . n A 1 38 ASN 38 313 313 ASN ASN X . n A 1 39 ASN 39 314 314 ASN ASN X . n A 1 40 LYS 40 315 315 LYS LYS X . n A 1 41 THR 41 316 316 THR THR X . n A 1 42 TYR 42 317 317 TYR TYR X . n A 1 43 ARG 43 318 318 ARG ARG X . n A 1 44 VAL 44 319 319 VAL VAL X . n A 1 45 ASP 45 320 320 ASP ASP X . n A 1 46 ASP 46 321 321 ASP ASP X . n A 1 47 ILE 47 322 322 ILE ILE X . n A 1 48 ASP 48 323 323 ASP ASP X . n A 1 49 TRP 49 324 324 TRP TRP X . n A 1 50 ASP 50 325 325 ASP ASP X . n A 1 51 GLN 51 326 326 GLN GLN X . n A 1 52 ASN 52 327 327 ASN ASN X . n A 1 53 PRO 53 328 328 PRO PRO X . n A 1 54 LYS 54 329 329 LYS LYS X . n A 1 55 SER 55 330 330 SER SER X . n A 1 56 THR 56 331 331 THR THR X . n A 1 57 PHE 57 332 332 PHE PHE X . n A 1 58 LYS 58 333 333 LYS LYS X . n A 1 59 LYS 59 334 334 LYS LYS X . n A 1 60 ALA 60 335 335 ALA ALA X . n A 1 61 ASP 61 336 336 ASP ASP X . n A 1 62 GLY 62 337 337 GLY GLY X . n A 1 63 SER 63 338 338 SER SER X . n A 1 64 GLU 64 339 339 GLU GLU X . n A 1 65 VAL 65 340 340 VAL VAL X . n A 1 66 SER 66 341 341 SER SER X . n A 1 67 PHE 67 342 342 PHE PHE X . n A 1 68 LEU 68 343 343 LEU LEU X . n A 1 69 GLU 69 344 344 GLU GLU X . n A 1 70 TYR 70 345 345 TYR TYR X . n A 1 71 TYR 71 346 346 TYR TYR X . n A 1 72 ARG 72 347 347 ARG ARG X . n A 1 73 LYS 73 348 348 LYS LYS X . n A 1 74 GLN 74 349 349 GLN GLN X . n A 1 75 TYR 75 350 350 TYR TYR X . n A 1 76 ASN 76 351 351 ASN ASN X . n A 1 77 GLN 77 352 352 GLN GLN X . n A 1 78 GLU 78 353 353 GLU GLU X . n A 1 79 ILE 79 354 354 ILE ILE X . n A 1 80 THR 80 355 355 THR THR X . n A 1 81 ASP 81 356 356 ASP ASP X . n A 1 82 LEU 82 357 357 LEU LEU X . n A 1 83 LYS 83 358 358 LYS LYS X . n A 1 84 GLN 84 359 359 GLN GLN X . n A 1 85 PRO 85 360 360 PRO PRO X . n A 1 86 MSE 86 361 361 MSE MSE X . n A 1 87 LEU 87 362 362 LEU LEU X . n A 1 88 VAL 88 363 363 VAL VAL X . n A 1 89 SER 89 364 364 SER SER X . n A 1 90 GLN 90 365 365 GLN GLN X . n A 1 91 PRO 91 366 366 PRO PRO X . n A 1 92 LYS 92 367 367 LYS LYS X . n A 1 93 ARG 93 368 ? ? ? X . n A 1 94 ARG 94 369 ? ? ? X . n A 1 95 ARG 95 370 ? ? ? X . n A 1 96 GLY 96 371 ? ? ? X . n A 1 97 PRO 97 372 ? ? ? X . n A 1 98 GLY 98 373 ? ? ? X . n A 1 99 GLY 99 374 ? ? ? X . n A 1 100 THR 100 375 ? ? ? X . n A 1 101 LEU 101 376 ? ? ? X . n A 1 102 PRO 102 377 ? ? ? X . n A 1 103 GLY 103 378 378 GLY GLY X . n A 1 104 PRO 104 379 379 PRO PRO X . n A 1 105 ALA 105 380 380 ALA ALA X . n A 1 106 MSE 106 381 381 MSE MSE X . n A 1 107 LEU 107 382 382 LEU LEU X . n A 1 108 ILE 108 383 383 ILE ILE X . n A 1 109 PRO 109 384 384 PRO PRO X . n A 1 110 GLU 110 385 385 GLU GLU X . n A 1 111 LEU 111 386 386 LEU LEU X . n A 1 112 CYS 112 387 387 CYS CYS X . n A 1 113 TYR 113 388 388 TYR TYR X . n A 1 114 LEU 114 389 389 LEU LEU X . n A 1 115 THR 115 390 390 THR THR X . n A 1 116 GLY 116 391 391 GLY GLY X . n A 1 117 LEU 117 392 392 LEU LEU X . n A 1 118 THR 118 393 393 THR THR X . n A 1 119 ASP 119 394 ? ? ? X . n A 1 120 LYS 120 395 ? ? ? X . n A 1 121 MET 121 396 ? ? ? X . n A 1 122 ARG 122 397 ? ? ? X . n A 1 123 ASN 123 398 ? ? ? X . n A 1 124 ASP 124 399 ? ? ? X . n B 2 1 G 1 1 1 G G A . n B 2 2 C 2 2 2 C C A . n B 2 3 G 3 3 3 G G A . n B 2 4 A 4 4 4 A A A . n B 2 5 A 5 5 5 A A A . n B 2 6 U 6 6 6 U U A . n B 2 7 A 7 7 7 A A A . n B 2 8 U 8 8 8 U U A . n B 2 9 U 9 9 9 U U A . n B 2 10 C 10 10 10 C C A . n B 2 11 G 11 11 11 G G A . n B 2 12 C 12 12 12 C C A . n B 2 13 U 13 13 13 U U A . n B 2 14 OMU 14 14 14 OMU OMU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 1 1 HOH HOH X . C 3 HOH 2 2 2 HOH HOH X . C 3 HOH 3 3 3 HOH HOH X . C 3 HOH 4 4 4 HOH HOH X . C 3 HOH 5 5 5 HOH HOH X . C 3 HOH 6 6 6 HOH HOH X . C 3 HOH 7 7 7 HOH HOH X . C 3 HOH 8 9 9 HOH HOH X . C 3 HOH 9 10 10 HOH HOH X . C 3 HOH 10 12 12 HOH HOH X . C 3 HOH 11 13 13 HOH HOH X . C 3 HOH 12 14 14 HOH HOH X . C 3 HOH 13 15 15 HOH HOH X . C 3 HOH 14 16 16 HOH HOH X . C 3 HOH 15 17 17 HOH HOH X . C 3 HOH 16 18 18 HOH HOH X . C 3 HOH 17 19 19 HOH HOH X . C 3 HOH 18 20 20 HOH HOH X . C 3 HOH 19 21 21 HOH HOH X . C 3 HOH 20 22 22 HOH HOH X . C 3 HOH 21 23 23 HOH HOH X . C 3 HOH 22 25 25 HOH HOH X . C 3 HOH 23 28 28 HOH HOH X . C 3 HOH 24 30 30 HOH HOH X . C 3 HOH 25 31 31 HOH HOH X . C 3 HOH 26 32 32 HOH HOH X . C 3 HOH 27 34 34 HOH HOH X . C 3 HOH 28 36 36 HOH HOH X . C 3 HOH 29 37 37 HOH HOH X . C 3 HOH 30 38 38 HOH HOH X . C 3 HOH 31 39 39 HOH HOH X . C 3 HOH 32 40 40 HOH HOH X . C 3 HOH 33 41 41 HOH HOH X . C 3 HOH 34 42 42 HOH HOH X . C 3 HOH 35 43 43 HOH HOH X . C 3 HOH 36 46 46 HOH HOH X . C 3 HOH 37 47 47 HOH HOH X . C 3 HOH 38 48 48 HOH HOH X . C 3 HOH 39 49 49 HOH HOH X . C 3 HOH 40 51 51 HOH HOH X . C 3 HOH 41 52 52 HOH HOH X . D 3 HOH 1 15 8 HOH HOH A . D 3 HOH 2 16 11 HOH HOH A . D 3 HOH 3 24 24 HOH HOH A . D 3 HOH 4 26 26 HOH HOH A . D 3 HOH 5 27 27 HOH HOH A . D 3 HOH 6 29 29 HOH HOH A . D 3 HOH 7 33 33 HOH HOH A . D 3 HOH 8 35 35 HOH HOH A . D 3 HOH 9 44 44 HOH HOH A . D 3 HOH 10 45 45 HOH HOH A . D 3 HOH 11 50 50 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 8 X MSE 283 ? MET SELENOMETHIONINE 2 A MSE 86 X MSE 361 ? MET SELENOMETHIONINE 3 A MSE 106 X MSE 381 ? MET SELENOMETHIONINE 4 B OMU 14 A OMU 14 ? U ;O2'-METHYLURIDINE 5'-MONOPHOSPHATE ; # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5890 ? 1 MORE -30 ? 1 'SSA (A^2)' 14770 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z+3/4 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 110.3977500000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 11.3385 24.4058 62.9260 0.0522 0.1792 0.0561 0.0126 -0.0124 0.0534 2.0923 5.8422 3.0539 0.4516 0.1870 2.2341 0.0454 0.0633 -0.1087 -0.1910 -0.0287 0.2038 0.1047 0.0311 -0.4544 'X-RAY DIFFRACTION' 2 ? refined 32.2999 36.7495 58.5363 0.2067 0.2390 0.4804 -0.0036 0.0354 -0.1480 6.0570 0.1117 0.5773 0.6180 -1.8190 -0.2099 0.0425 -0.0171 -0.0255 -0.3346 0.2747 -0.1137 0.0202 0.0012 0.1484 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 X -10 X 9999 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A -10 A 9999 ? . . . . ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 6 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 7 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 8 SHARP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A G 3 ? ? "C4'" A G 3 ? ? "O4'" A G 3 ? ? 116.67 109.80 6.87 0.90 N 2 1 "C1'" A G 3 ? ? "O4'" A G 3 ? ? "C4'" A G 3 ? ? 105.31 109.70 -4.39 0.70 N 3 1 "C4'" A G 3 ? ? "C3'" A G 3 ? ? "C2'" A G 3 ? ? 95.42 102.60 -7.18 1.00 N 4 1 "O4'" A A 7 ? ? "C1'" A A 7 ? ? N9 A A 7 ? ? 113.39 108.50 4.89 0.70 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id PRO _pdbx_validate_torsion.auth_asym_id X _pdbx_validate_torsion.auth_seq_id 366 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -58.89 _pdbx_validate_torsion.psi -172.65 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 X GLN 298 ? OE1 ? A GLN 23 OE1 2 1 Y 1 X GLN 298 ? NE2 ? A GLN 23 NE2 3 1 Y 1 X LYS 301 ? CG ? A LYS 26 CG 4 1 Y 1 X LYS 301 ? CD ? A LYS 26 CD 5 1 Y 1 X LYS 301 ? CE ? A LYS 26 CE 6 1 Y 1 X LYS 301 ? NZ ? A LYS 26 NZ 7 1 Y 1 X GLU 302 ? CG ? A GLU 27 CG 8 1 Y 1 X GLU 302 ? CD ? A GLU 27 CD 9 1 Y 1 X GLU 302 ? OE1 ? A GLU 27 OE1 10 1 Y 1 X GLU 302 ? OE2 ? A GLU 27 OE2 11 1 Y 1 X GLU 339 ? CG ? A GLU 64 CG 12 1 Y 1 X GLU 339 ? CD ? A GLU 64 CD 13 1 Y 1 X GLU 339 ? OE1 ? A GLU 64 OE1 14 1 Y 1 X GLU 339 ? OE2 ? A GLU 64 OE2 15 1 Y 1 X LEU 392 ? CG ? A LEU 117 CG 16 1 Y 1 X LEU 392 ? CD1 ? A LEU 117 CD1 17 1 Y 1 X LEU 392 ? CD2 ? A LEU 117 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X SER 276 ? A SER 1 2 1 Y 1 X ARG 368 ? A ARG 93 3 1 Y 1 X ARG 369 ? A ARG 94 4 1 Y 1 X ARG 370 ? A ARG 95 5 1 Y 1 X GLY 371 ? A GLY 96 6 1 Y 1 X PRO 372 ? A PRO 97 7 1 Y 1 X GLY 373 ? A GLY 98 8 1 Y 1 X GLY 374 ? A GLY 99 9 1 Y 1 X THR 375 ? A THR 100 10 1 Y 1 X LEU 376 ? A LEU 101 11 1 Y 1 X PRO 377 ? A PRO 102 12 1 Y 1 X ASP 394 ? A ASP 119 13 1 Y 1 X LYS 395 ? A LYS 120 14 1 Y 1 X MET 396 ? A MET 121 15 1 Y 1 X ARG 397 ? A ARG 122 16 1 Y 1 X ASN 398 ? A ASN 123 17 1 Y 1 X ASP 399 ? A ASP 124 # _ndb_struct_conf_na.entry_id 3O7V _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 12 7_555 -0.239 -0.372 0.049 -19.477 -2.436 0.423 1 A_G1:C12_A A 1 ? A 12 ? 19 1 1 B C 2 1_555 B G 11 7_555 0.482 -0.252 0.421 -2.506 0.197 -1.313 2 A_C2:G11_A A 2 ? A 11 ? 19 1 1 B G 3 1_555 B C 10 7_555 -0.049 -0.290 -0.134 0.853 -8.144 1.810 3 A_G3:C10_A A 3 ? A 10 ? 19 1 1 B A 4 1_555 B U 9 7_555 0.040 -0.083 -0.135 -6.306 -3.801 -1.512 4 A_A4:U9_A A 4 ? A 9 ? 20 1 1 B A 5 1_555 B U 8 7_555 -0.003 -0.095 -0.134 -0.849 -13.686 5.319 5 A_A5:U8_A A 5 ? A 8 ? 20 1 1 B U 6 1_555 B A 7 7_555 -0.190 -0.167 -0.281 4.953 -13.737 -3.759 6 A_U6:A7_A A 6 ? A 7 ? 20 1 1 B A 7 1_555 B U 6 7_555 0.190 -0.167 -0.281 -4.953 -13.737 -3.759 7 A_A7:U6_A A 7 ? A 6 ? 20 1 1 B U 8 1_555 B A 5 7_555 0.003 -0.095 -0.134 0.849 -13.686 5.319 8 A_U8:A5_A A 8 ? A 5 ? 20 1 1 B U 9 1_555 B A 4 7_555 -0.040 -0.083 -0.135 6.306 -3.801 -1.512 9 A_U9:A4_A A 9 ? A 4 ? 20 1 1 B C 10 1_555 B G 3 7_555 0.049 -0.290 -0.134 -0.853 -8.144 1.810 10 A_C10:G3_A A 10 ? A 3 ? 19 1 1 B G 11 1_555 B C 2 7_555 -0.482 -0.252 0.421 2.506 0.197 -1.313 11 A_G11:C2_A A 11 ? A 2 ? 19 1 1 B C 12 1_555 B G 1 7_555 0.239 -0.372 0.049 19.477 -2.436 0.423 12 A_C12:G1_A A 12 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 12 7_555 B C 2 1_555 B G 11 7_555 -0.813 -1.321 3.068 -2.672 1.365 30.193 -2.781 1.048 3.065 2.613 5.114 30.338 1 AA_G1C2:G11C12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 B C 2 1_555 B G 11 7_555 B G 3 1_555 B C 10 7_555 1.252 -2.352 3.227 2.695 2.267 24.097 -6.269 -2.144 3.115 5.393 -6.411 24.349 2 AA_C2G3:C10G11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 B G 3 1_555 B C 10 7_555 B A 4 1_555 B U 9 7_555 -1.019 -2.310 3.403 -2.600 4.400 30.309 -5.225 1.411 3.119 8.341 4.928 30.727 3 AA_G3A4:U9C10_AA A 3 ? A 10 ? A 4 ? A 9 ? 1 B A 4 1_555 B U 9 7_555 B A 5 1_555 B U 8 7_555 0.040 -1.595 3.171 0.995 8.211 27.727 -4.837 0.118 2.601 16.669 -2.019 28.911 4 AA_A4A5:U8U9_AA A 4 ? A 9 ? A 5 ? A 8 ? 1 B A 5 1_555 B U 8 7_555 B U 6 1_555 B A 7 7_555 -0.532 -1.197 3.238 1.376 15.659 29.953 -4.358 1.118 2.319 28.003 -2.461 33.744 5 AA_A5U6:A7U8_AA A 5 ? A 8 ? A 6 ? A 7 ? 1 B U 6 1_555 B A 7 7_555 B A 7 1_555 B U 6 7_555 0.000 -1.278 3.550 0.000 17.640 27.466 -5.297 0.000 2.328 33.168 0.000 32.551 6 AA_U6A7:U6A7_AA A 6 ? A 7 ? A 7 ? A 6 ? 1 B A 7 1_555 B U 6 7_555 B U 8 1_555 B A 5 7_555 0.532 -1.197 3.238 -1.376 15.659 29.953 -4.358 -1.118 2.319 28.003 2.461 33.744 7 AA_A7U8:A5U6_AA A 7 ? A 6 ? A 8 ? A 5 ? 1 B U 8 1_555 B A 5 7_555 B U 9 1_555 B A 4 7_555 -0.040 -1.595 3.171 -0.995 8.211 27.727 -4.837 -0.118 2.601 16.669 2.019 28.911 8 AA_U8U9:A4A5_AA A 8 ? A 5 ? A 9 ? A 4 ? 1 B U 9 1_555 B A 4 7_555 B C 10 1_555 B G 3 7_555 1.019 -2.310 3.403 2.600 4.400 30.310 -5.225 -1.411 3.119 8.341 -4.928 30.727 9 AA_U9C10:G3A4_AA A 9 ? A 4 ? A 10 ? A 3 ? 1 B C 10 1_555 B G 3 7_555 B G 11 1_555 B C 2 7_555 -1.252 -2.352 3.227 -2.695 2.267 24.097 -6.269 2.144 3.115 5.393 6.411 24.349 10 AA_C10G11:C2G3_AA A 10 ? A 3 ? A 11 ? A 2 ? 1 B G 11 1_555 B C 2 7_555 B C 12 1_555 B G 1 7_555 0.813 -1.321 3.068 2.672 1.365 30.193 -2.781 -1.048 3.066 2.613 -5.114 30.338 11 AA_G11C12:G1C2_AA A 11 ? A 2 ? A 12 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #